HEADER VIRAL PROTEIN 05-OCT-00 1G03 TITLE NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTLV-I CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF MAJOR CORE PROTEIN P24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-LYMPHOTROPIC VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11908; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PCYB1 KEYWDS BETA HAIRPIN LOOP, HELIX CORE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,F.BOUAMR,X.YAO,C.CARTER,N.TJANDRA REVDAT 4 06-APR-16 1G03 1 AUTHOR VERSN REVDAT 3 24-FEB-09 1G03 1 VERSN REVDAT 2 01-APR-03 1G03 1 JRNL REVDAT 1 21-MAR-01 1G03 0 JRNL AUTH C.C.CORNILESCU,F.BOUAMR,X.YAO,C.CARTER,N.TJANDRA JRNL TITL STRUCTURAL ANALYSIS OF THE N-TERMINAL DOMAIN OF THE HUMAN JRNL TITL 2 T-CELL LEUKEMIA VIRUS CAPSID PROTEIN. JRNL REF J.MOL.BIOL. V. 306 783 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11243788 JRNL DOI 10.1006/JMBI.2000.4395 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.840 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G03 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 302 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 10MM; 10MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM HTLV-I CAPSID U-15N,13C; REMARK 210 0.6 MM HTLV-I CAPSID U-15N,13C; REMARK 210 0.6 MM HTLV-I CAPSID U-15N; 0.6 REMARK 210 MM HTLV-I CAPSID U-15N,13C 4% REMARK 210 DMPC/DHPC 3:1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY; 4D_ REMARK 210 13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, NMRPIPE 1.7, PIPP/ REMARK 210 STAPP 4.2.8 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING DIPOLAR COUPLINGS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 46 HE22 GLN A 114 1.32 REMARK 500 O LEU A 78 H ALA A 82 1.50 REMARK 500 O ASP A 130 H ALA A 134 1.56 REMARK 500 O ASP A 54 H LEU A 58 1.58 REMARK 500 OD1 ASN A 103 H GLN A 106 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 14 -109.19 -77.55 REMARK 500 1 TRP A 15 -22.07 70.11 REMARK 500 1 GLN A 16 40.05 -174.61 REMARK 500 1 SER A 28 -77.56 -58.64 REMARK 500 1 GLN A 29 -54.19 -9.77 REMARK 500 1 PRO A 32 87.71 -48.74 REMARK 500 1 SER A 34 170.26 60.24 REMARK 500 1 GLN A 36 -36.36 -36.19 REMARK 500 1 ASP A 49 68.49 23.27 REMARK 500 1 CYS A 63 -143.02 -107.33 REMARK 500 1 LEU A 66 -72.79 -50.20 REMARK 500 1 GLN A 74 -71.62 -49.85 REMARK 500 1 ASP A 76 -71.34 -25.09 REMARK 500 1 THR A 88 53.27 -171.03 REMARK 500 1 SER A 89 19.60 48.12 REMARK 500 1 TYR A 90 128.78 46.80 REMARK 500 1 ASN A 91 -57.63 -136.69 REMARK 500 1 ALA A 94 -53.94 -7.82 REMARK 500 1 ARG A 98 -27.26 -38.15 REMARK 500 1 ASN A 102 37.43 -70.04 REMARK 500 1 LEU A 109 5.26 -65.90 REMARK 500 1 SER A 127 -10.25 160.41 REMARK 500 1 ALA A 128 94.13 178.14 REMARK 500 1 LYS A 129 -179.69 174.20 REMARK 500 1 PRO A 131 9.48 -68.40 REMARK 500 1 TRP A 133 -46.09 175.10 REMARK 500 2 ARG A 13 67.47 -159.84 REMARK 500 2 GLN A 16 59.95 -172.80 REMARK 500 2 SER A 28 -70.96 -62.65 REMARK 500 2 GLN A 29 -53.58 -12.71 REMARK 500 2 ALA A 30 -157.73 -94.58 REMARK 500 2 PRO A 32 47.92 -63.91 REMARK 500 2 SER A 34 159.73 62.03 REMARK 500 2 GLN A 36 -39.99 -37.96 REMARK 500 2 ASP A 49 66.68 22.21 REMARK 500 2 LEU A 59 -68.85 -94.14 REMARK 500 2 CYS A 63 -147.77 -106.83 REMARK 500 2 SER A 64 -64.00 -163.43 REMARK 500 2 SER A 65 -84.49 -156.39 REMARK 500 2 SER A 69 -72.52 -56.45 REMARK 500 2 GLN A 74 -71.36 -48.45 REMARK 500 2 ASP A 76 -71.00 -24.74 REMARK 500 2 ARG A 85 -32.79 -39.55 REMARK 500 2 ILE A 87 -151.46 -62.73 REMARK 500 2 THR A 88 58.94 -66.74 REMARK 500 2 SER A 89 17.31 45.00 REMARK 500 2 TYR A 90 127.96 45.87 REMARK 500 2 ASN A 91 -55.64 -135.82 REMARK 500 2 ALA A 94 -55.87 -9.72 REMARK 500 2 ARG A 98 -25.59 -38.45 REMARK 500 REMARK 500 THIS ENTRY HAS 646 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QRJ RELATED DB: PDB REMARK 900 RELATED ID: 1GDS RELATED DB: PDB DBREF 1G03 A 1 134 UNP P14077 GAG_HTL1M 131 264 SEQRES 1 A 134 PRO VAL MET HIS PRO HIS GLY ALA PRO PRO ASN HIS ARG SEQRES 2 A 134 PRO TRP GLN MET LYS ASP LEU GLN ALA ILE LYS GLN GLU SEQRES 3 A 134 VAL SER GLN ALA ALA PRO GLY SER PRO GLN PHE MET GLN SEQRES 4 A 134 THR ILE ARG LEU ALA VAL GLN GLN PHE ASP PRO THR ALA SEQRES 5 A 134 LYS ASP LEU GLN ASP LEU LEU GLN TYR LEU CYS SER SER SEQRES 6 A 134 LEU VAL ALA SER LEU HIS HIS GLN GLN LEU ASP SER LEU SEQRES 7 A 134 ILE SER GLU ALA GLU THR ARG GLY ILE THR SER TYR ASN SEQRES 8 A 134 PRO LEU ALA GLY PRO LEU ARG VAL GLN ALA ASN ASN PRO SEQRES 9 A 134 GLN GLN GLN GLY LEU ARG ARG GLU TYR GLN GLN LEU TRP SEQRES 10 A 134 LEU ALA ALA PHE ALA ALA LEU PRO GLY SER ALA LYS ASP SEQRES 11 A 134 PRO SER TRP ALA HELIX 1 1 MET A 17 ALA A 30 1 14 HELIX 2 2 PRO A 35 PHE A 48 1 14 HELIX 3 3 THR A 51 TYR A 61 1 11 HELIX 4 4 SER A 64 ILE A 87 1 24 HELIX 5 5 PRO A 96 ASN A 102 1 7 HELIX 6 6 GLN A 107 ALA A 123 1 17 SHEET 1 A 2 VAL A 2 MET A 3 0 SHEET 2 A 2 ASN A 11 HIS A 12 -1 O ASN A 11 N MET A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1