HEADER METAL BINDING PROTEIN 17-OCT-00 1G25 TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN TFIIH MAT1 TITLE 2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: RING FINGER PROTEIN MAT1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 LAMBDA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS RING FINGER (C3HC4), METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.GERVAIS,E.WASIELEWSKI,D.BUSSO,A.POTERSZMAN,J.M.EGLY,J.C.THIERRY, AUTHOR 2 B.KIEFFER REVDAT 4 23-FEB-22 1G25 1 REMARK LINK REVDAT 3 24-FEB-09 1G25 1 VERSN REVDAT 2 04-FEB-03 1G25 1 JRNL REMARK REVDAT 1 01-NOV-00 1G25 0 JRNL AUTH V.GERVAIS,D.BUSSO,E.WASIELEWSKI,A.POTERSZMAN,J.M.EGLY, JRNL AUTH 2 J.C.THIERRY,B.KIEFFER JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN JRNL TITL 2 TFIIH MAT1 SUBUNIT: NEW INSIGHTS INTO THE RING FINGER FAMILY JRNL REF J.BIOL.CHEM. V. 276 7457 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11056162 JRNL DOI 10.1074/JBC.M007963200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8, X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 988 RESTRAINTS, 897 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 72 REMARK 3 DIHEDRAL ANGLE RESTRAINTS,11 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS AND 8 DISTANCE RESTRAINTS FROM THE ZINC BINDING. REMARK 4 REMARK 4 1G25 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012139. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 290; 283 REMARK 210 PH : 7.5; 7.5; 7.5 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL REMARK 210 PRESSURE : AMBIANT; AMBIANT; AMBIANT REMARK 210 SAMPLE CONTENTS : 2 MM MAT1; 20 MM TRIS-HCL PH REMARK 210 7.5; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_NOESY; DQF-COSY; 2D_TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3, XEASY 1.3.13 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 57 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 34 H LEU A 38 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -63.51 -128.61 REMARK 500 1 ASP A 3 -147.41 60.30 REMARK 500 1 CYS A 6 160.48 -32.44 REMARK 500 1 ARG A 8 -71.01 -59.98 REMARK 500 1 CYS A 9 46.45 -93.44 REMARK 500 1 LYS A 10 93.77 -35.50 REMARK 500 1 THR A 11 -43.51 -176.11 REMARK 500 1 THR A 12 -109.61 -47.08 REMARK 500 1 LYS A 13 -38.07 -26.81 REMARK 500 1 PRO A 17 39.65 -97.84 REMARK 500 1 SER A 18 56.60 -164.20 REMARK 500 1 LEU A 19 -143.93 -138.29 REMARK 500 1 LYS A 20 159.06 178.66 REMARK 500 1 VAL A 25 -74.30 -33.34 REMARK 500 1 HIS A 28 -98.86 -130.57 REMARK 500 1 THR A 29 134.21 -179.34 REMARK 500 1 CYS A 31 172.08 -44.86 REMARK 500 1 ALA A 43 107.78 65.35 REMARK 500 1 GLU A 48 -57.41 -141.58 REMARK 500 1 LYS A 55 88.56 170.77 REMARK 500 1 SER A 56 -121.00 59.08 REMARK 500 1 ASN A 57 102.63 79.28 REMARK 500 1 LEU A 62 -40.48 -175.41 REMARK 500 1 GLU A 64 90.11 59.74 REMARK 500 2 ASP A 3 -93.38 -37.00 REMARK 500 2 CYS A 6 130.97 -30.98 REMARK 500 2 CYS A 9 48.95 -99.88 REMARK 500 2 LYS A 10 93.61 -31.38 REMARK 500 2 THR A 11 -38.75 -178.86 REMARK 500 2 THR A 12 -100.58 -48.27 REMARK 500 2 LYS A 13 -27.50 -36.09 REMARK 500 2 LYS A 20 -153.81 -145.97 REMARK 500 2 VAL A 25 -99.86 22.33 REMARK 500 2 HIS A 28 -100.66 -102.27 REMARK 500 2 THR A 29 128.08 171.60 REMARK 500 2 CYS A 31 171.34 -48.80 REMARK 500 2 CYS A 34 -71.07 -80.35 REMARK 500 2 ALA A 43 -145.35 68.23 REMARK 500 2 ASN A 45 -179.45 72.20 REMARK 500 2 ARG A 54 62.34 -178.10 REMARK 500 2 LYS A 55 49.86 173.56 REMARK 500 2 LEU A 62 113.70 -174.52 REMARK 500 2 GLU A 64 59.37 -94.24 REMARK 500 3 ASP A 2 -95.80 43.33 REMARK 500 3 ASP A 3 -153.33 38.71 REMARK 500 3 CYS A 9 50.54 -99.34 REMARK 500 3 LYS A 10 85.83 -27.32 REMARK 500 3 THR A 11 -52.80 -174.84 REMARK 500 3 ARG A 15 -78.48 -88.45 REMARK 500 3 SER A 18 67.71 -118.34 REMARK 500 REMARK 500 THIS ENTRY HAS 421 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.12 SIDE CHAIN REMARK 500 1 ARG A 15 0.32 SIDE CHAIN REMARK 500 1 ARG A 41 0.20 SIDE CHAIN REMARK 500 1 ARG A 54 0.27 SIDE CHAIN REMARK 500 1 ARG A 59 0.24 SIDE CHAIN REMARK 500 2 ARG A 8 0.26 SIDE CHAIN REMARK 500 2 ARG A 15 0.32 SIDE CHAIN REMARK 500 2 ARG A 41 0.23 SIDE CHAIN REMARK 500 2 ARG A 54 0.20 SIDE CHAIN REMARK 500 2 ARG A 59 0.31 SIDE CHAIN REMARK 500 3 ARG A 8 0.25 SIDE CHAIN REMARK 500 3 ARG A 15 0.28 SIDE CHAIN REMARK 500 3 ARG A 41 0.32 SIDE CHAIN REMARK 500 3 ARG A 54 0.25 SIDE CHAIN REMARK 500 3 ARG A 59 0.11 SIDE CHAIN REMARK 500 4 ARG A 8 0.23 SIDE CHAIN REMARK 500 4 ARG A 15 0.25 SIDE CHAIN REMARK 500 4 ARG A 54 0.32 SIDE CHAIN REMARK 500 4 ARG A 59 0.15 SIDE CHAIN REMARK 500 5 ARG A 8 0.27 SIDE CHAIN REMARK 500 5 ARG A 15 0.32 SIDE CHAIN REMARK 500 5 ARG A 41 0.14 SIDE CHAIN REMARK 500 5 ARG A 54 0.17 SIDE CHAIN REMARK 500 5 ARG A 59 0.11 SIDE CHAIN REMARK 500 6 ARG A 8 0.19 SIDE CHAIN REMARK 500 6 ARG A 15 0.23 SIDE CHAIN REMARK 500 6 ARG A 41 0.32 SIDE CHAIN REMARK 500 6 ARG A 54 0.29 SIDE CHAIN REMARK 500 6 ARG A 59 0.27 SIDE CHAIN REMARK 500 7 ARG A 8 0.29 SIDE CHAIN REMARK 500 7 ARG A 15 0.22 SIDE CHAIN REMARK 500 7 ARG A 41 0.20 SIDE CHAIN REMARK 500 7 ARG A 54 0.26 SIDE CHAIN REMARK 500 7 ARG A 59 0.31 SIDE CHAIN REMARK 500 8 ARG A 8 0.31 SIDE CHAIN REMARK 500 8 ARG A 15 0.32 SIDE CHAIN REMARK 500 8 ARG A 41 0.15 SIDE CHAIN REMARK 500 8 ARG A 54 0.22 SIDE CHAIN REMARK 500 8 ARG A 59 0.20 SIDE CHAIN REMARK 500 9 ARG A 8 0.26 SIDE CHAIN REMARK 500 9 ARG A 15 0.12 SIDE CHAIN REMARK 500 9 ARG A 41 0.28 SIDE CHAIN REMARK 500 9 ARG A 54 0.23 SIDE CHAIN REMARK 500 9 ARG A 59 0.32 SIDE CHAIN REMARK 500 10 ARG A 8 0.32 SIDE CHAIN REMARK 500 10 ARG A 15 0.32 SIDE CHAIN REMARK 500 10 ARG A 41 0.29 SIDE CHAIN REMARK 500 10 ARG A 54 0.20 SIDE CHAIN REMARK 500 10 ARG A 59 0.15 SIDE CHAIN REMARK 500 11 ARG A 8 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 97 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 66 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 9 SG 111.9 REMARK 620 3 CYS A 31 SG 106.9 111.1 REMARK 620 4 CYS A 34 SG 108.1 109.6 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 67 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 HIS A 28 ND1 110.2 REMARK 620 3 CYS A 46 SG 108.9 111.1 REMARK 620 4 CYS A 49 SG 111.1 108.6 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 67 DBREF 1G25 A 1 65 UNP P51948 MAT1_HUMAN 1 65 SEQRES 1 A 65 MET ASP ASP GLN GLY CYS PRO ARG CYS LYS THR THR LYS SEQRES 2 A 65 TYR ARG ASN PRO SER LEU LYS LEU MET VAL ASN VAL CYS SEQRES 3 A 65 GLY HIS THR LEU CYS GLU SER CYS VAL ASP LEU LEU PHE SEQRES 4 A 65 VAL ARG GLY ALA GLY ASN CYS PRO GLU CYS GLY THR PRO SEQRES 5 A 65 LEU ARG LYS SER ASN PHE ARG VAL GLN LEU PHE GLU ASP HET ZN A 66 1 HET ZN A 67 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 THR A 11 ASN A 16 1 6 HELIX 2 2 GLU A 32 ARG A 41 1 10 SHEET 1 A 3 LEU A 30 CYS A 31 0 SHEET 2 A 3 LEU A 21 VAL A 23 -1 N MET A 22 O LEU A 30 SHEET 3 A 3 ARG A 59 GLN A 61 -1 N ARG A 59 O VAL A 23 LINK SG CYS A 6 ZN ZN A 66 1555 1555 2.28 LINK SG CYS A 9 ZN ZN A 66 1555 1555 2.32 LINK SG CYS A 26 ZN ZN A 67 1555 1555 2.30 LINK ND1 HIS A 28 ZN ZN A 67 1555 1555 2.00 LINK SG CYS A 31 ZN ZN A 66 1555 1555 2.29 LINK SG CYS A 34 ZN ZN A 66 1555 1555 2.29 LINK SG CYS A 46 ZN ZN A 67 1555 1555 2.29 LINK SG CYS A 49 ZN ZN A 67 1555 1555 2.30 SITE 1 AC1 5 CYS A 6 CYS A 9 CYS A 31 SER A 33 SITE 2 AC1 5 CYS A 34 SITE 1 AC2 4 CYS A 26 HIS A 28 CYS A 46 CYS A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1