HEADER TRANSCRIPTION 19-OCT-00 1G2H TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF THE TYRR PROTEIN OF TITLE 2 HAEMOPHILUS INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN TYRR HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; RESIDUES 258-318; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYRR; PROTEIN STRUCTURE; NMR; DNA-BINDING DOMAIN; HELIX-TURN-HELIX KEYWDS 2 MOTIF, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR Y.WANG,S.ZHAO,R.L.SOMERVILLE,O.JARDETZKY REVDAT 4 23-FEB-22 1G2H 1 REMARK REVDAT 3 24-FEB-09 1G2H 1 VERSN REVDAT 2 13-JUN-01 1G2H 1 AUTHOR JRNL REVDAT 1 07-MAR-01 1G2H 0 JRNL AUTH Y.WANG,S.ZHAO,R.L.SOMERVILLE,O.JARDETZKY JRNL TITL SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF THE TYRR JRNL TITL 2 PROTEIN OF HAEMOPHILUS INFLUENZAE. JRNL REF PROTEIN SCI. V. 10 592 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11344327 JRNL DOI 10.1110/PS.45301 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.5, X-PLOR 3.85 REMARK 3 AUTHORS : VIARN (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G2H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000012151. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM TYRR(258-318), 50MM REMARK 210 PHOSPHATE BUFFER; 2MM TYRR(258- REMARK 210 318), U-15N, 50MM PHOSPHATE REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.85 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES WERE DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 3D HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 25 H PHE A 29 1.51 REMARK 500 O GLU A 22 H LEU A 26 1.58 REMARK 500 O GLU A 22 H VAL A 25 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -160.31 -120.93 REMARK 500 1 SER A 5 172.83 172.95 REMARK 500 1 LEU A 14 60.73 38.77 REMARK 500 1 ASP A 15 -36.82 -171.88 REMARK 500 1 ILE A 17 10.22 -152.41 REMARK 500 1 SER A 35 103.25 55.05 REMARK 500 1 SER A 46 40.00 -89.83 REMARK 500 1 HIS A 47 -87.15 43.89 REMARK 500 1 ILE A 59 -140.28 -125.05 REMARK 500 2 ALA A 2 -163.48 -65.52 REMARK 500 2 VAL A 3 -154.75 -62.81 REMARK 500 2 ILE A 4 38.88 28.65 REMARK 500 2 LEU A 6 -82.95 38.40 REMARK 500 2 GLU A 8 50.80 -112.86 REMARK 500 2 LEU A 14 -84.35 59.31 REMARK 500 2 ASP A 15 -31.01 -31.73 REMARK 500 2 ILE A 17 67.81 -156.59 REMARK 500 2 SER A 35 115.66 58.09 REMARK 500 2 SER A 46 41.88 -88.41 REMARK 500 2 HIS A 47 -87.83 47.92 REMARK 500 2 ILE A 59 -139.94 -92.98 REMARK 500 3 ALA A 2 -148.16 -141.66 REMARK 500 3 SER A 5 58.92 178.24 REMARK 500 3 LEU A 6 -67.71 60.91 REMARK 500 3 LEU A 14 -83.40 60.41 REMARK 500 3 ASP A 15 -27.13 -37.77 REMARK 500 3 ILE A 17 14.84 -159.69 REMARK 500 3 TYR A 33 78.43 -108.16 REMARK 500 3 PRO A 34 68.59 -67.81 REMARK 500 3 SER A 35 91.35 164.70 REMARK 500 3 SER A 46 35.34 -90.93 REMARK 500 3 HIS A 47 -86.63 46.19 REMARK 500 3 THR A 48 -36.79 -39.48 REMARK 500 3 ILE A 59 -139.68 -123.17 REMARK 500 4 SER A 5 64.86 179.77 REMARK 500 4 LEU A 6 -77.83 59.85 REMARK 500 4 GLU A 8 45.62 -105.77 REMARK 500 4 LEU A 14 -87.33 57.49 REMARK 500 4 ASP A 15 -31.78 -34.99 REMARK 500 4 GLU A 16 -9.64 -55.08 REMARK 500 4 ILE A 17 19.40 -165.34 REMARK 500 4 SER A 35 106.52 55.51 REMARK 500 4 SER A 46 37.70 -90.26 REMARK 500 4 HIS A 47 -86.30 43.90 REMARK 500 4 THR A 48 -39.74 -38.83 REMARK 500 5 SER A 5 176.35 175.81 REMARK 500 5 LEU A 14 -82.29 66.07 REMARK 500 5 ASP A 15 45.22 -62.24 REMARK 500 5 PRO A 34 67.33 -68.46 REMARK 500 5 SER A 35 102.22 167.80 REMARK 500 REMARK 500 THIS ENTRY HAS 339 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.32 SIDE CHAIN REMARK 500 1 ARG A 42 0.24 SIDE CHAIN REMARK 500 2 ARG A 37 0.32 SIDE CHAIN REMARK 500 2 ARG A 42 0.18 SIDE CHAIN REMARK 500 3 ARG A 37 0.20 SIDE CHAIN REMARK 500 3 ARG A 42 0.32 SIDE CHAIN REMARK 500 4 ARG A 37 0.24 SIDE CHAIN REMARK 500 4 ARG A 42 0.31 SIDE CHAIN REMARK 500 5 ARG A 37 0.23 SIDE CHAIN REMARK 500 5 ARG A 42 0.31 SIDE CHAIN REMARK 500 6 ARG A 37 0.23 SIDE CHAIN REMARK 500 6 ARG A 42 0.28 SIDE CHAIN REMARK 500 7 ARG A 37 0.31 SIDE CHAIN REMARK 500 7 ARG A 42 0.32 SIDE CHAIN REMARK 500 8 ARG A 37 0.26 SIDE CHAIN REMARK 500 8 ARG A 42 0.29 SIDE CHAIN REMARK 500 9 ARG A 37 0.25 SIDE CHAIN REMARK 500 9 ARG A 42 0.30 SIDE CHAIN REMARK 500 10 ARG A 37 0.30 SIDE CHAIN REMARK 500 10 ARG A 42 0.28 SIDE CHAIN REMARK 500 11 ARG A 37 0.26 SIDE CHAIN REMARK 500 11 ARG A 42 0.32 SIDE CHAIN REMARK 500 12 ARG A 37 0.32 SIDE CHAIN REMARK 500 12 ARG A 42 0.24 SIDE CHAIN REMARK 500 13 ARG A 37 0.32 SIDE CHAIN REMARK 500 13 ARG A 42 0.26 SIDE CHAIN REMARK 500 14 ARG A 37 0.32 SIDE CHAIN REMARK 500 14 ARG A 42 0.24 SIDE CHAIN REMARK 500 15 ARG A 37 0.17 SIDE CHAIN REMARK 500 15 ARG A 42 0.21 SIDE CHAIN REMARK 500 16 ARG A 37 0.28 SIDE CHAIN REMARK 500 16 ARG A 42 0.31 SIDE CHAIN REMARK 500 17 ARG A 37 0.30 SIDE CHAIN REMARK 500 17 ARG A 42 0.23 SIDE CHAIN REMARK 500 18 ARG A 37 0.23 SIDE CHAIN REMARK 500 18 ARG A 42 0.30 SIDE CHAIN REMARK 500 19 ARG A 37 0.29 SIDE CHAIN REMARK 500 19 ARG A 42 0.30 SIDE CHAIN REMARK 500 20 ARG A 37 0.31 SIDE CHAIN REMARK 500 20 ARG A 42 0.31 SIDE CHAIN REMARK 500 21 ARG A 37 0.13 SIDE CHAIN REMARK 500 21 ARG A 42 0.23 SIDE CHAIN REMARK 500 22 ARG A 37 0.31 SIDE CHAIN REMARK 500 22 ARG A 42 0.29 SIDE CHAIN REMARK 500 23 ARG A 37 0.32 SIDE CHAIN REMARK 500 23 ARG A 42 0.14 SIDE CHAIN REMARK 500 24 ARG A 37 0.23 SIDE CHAIN REMARK 500 24 ARG A 42 0.19 SIDE CHAIN REMARK 500 25 ARG A 37 0.09 SIDE CHAIN REMARK 500 25 ARG A 42 0.20 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 64 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4784 RELATED DB: BMRB DBREF 1G2H A 1 61 UNP P44694 TYRR_HAEIN 258 318 SEQRES 1 A 61 SER ALA VAL ILE SER LEU ASP GLU PHE GLU ASN LYS THR SEQRES 2 A 61 LEU ASP GLU ILE ILE GLY PHE TYR GLU ALA GLN VAL LEU SEQRES 3 A 61 LYS LEU PHE TYR ALA GLU TYR PRO SER THR ARG LYS LEU SEQRES 4 A 61 ALA GLN ARG LEU GLY VAL SER HIS THR ALA ILE ALA ASN SEQRES 5 A 61 LYS LEU LYS GLN TYR GLY ILE GLY LYS HELIX 1 1 GLY A 19 TYR A 33 1 15 HELIX 2 2 SER A 35 LEU A 43 1 9 HELIX 3 3 HIS A 47 GLN A 56 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1