data_1G2Z # _entry.id 1G2Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1G2Z pdb_00001g2z 10.2210/pdb1g2z/pdb RCSB RCSB012169 ? ? WWPDB D_1000012169 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-01-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'Chirality error at CA center of SER B3' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1G2Z _pdbx_database_status.recvd_initial_deposition_date 2000-10-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G2Y 'HNF-1alpha dimerization domain, with selenomethionine substitued at Leu 12' unspecified PDB 1G39 'Wild-type HNF-1alpha dimerization domain' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rose, R.B.' 1 'Endrizzi, J.A.' 2 'Cronk, J.D.' 3 'Holton, J.' 4 'Alber, T.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'High-resolution structure of the HNF-1alpha dimerization domain.' Biochemistry 39 15062 15070 2000 BICHAW US 0006-2960 0033 ? 11106484 10.1021/bi001996t 1 'Structural basis of dimerization, coactivator recognition and MODY3 mutations in HNF-1alpha' Nat.Struct.Biol. 7 744 748 2000 NSBIEW US 1072-8368 2024 ? ? 10.1038/78966 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rose, R.B.' 1 ? primary 'Endrizzi, J.A.' 2 ? primary 'Cronk, J.D.' 3 ? primary 'Holton, J.' 4 ? primary 'Alber, T.' 5 ? 1 'Rose, R.B.' 6 ? 1 'Bayle, J.H.' 7 ? 1 'Endrizzi, J.A.' 8 ? 1 'Cronk, J.D.' 9 ? 1 'Crabtree, G.R.' 10 ? 1 'Alber, T.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HEPATOCYTE NUCLEAR FACTOR 1-ALPHA' 3451.884 2 ? 'L13(MSE)' 'DIMERIZATION DOMAIN, RESIDUES 1-32' ? 2 water nat water 18.015 99 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HNF-1A, LIVER SPECIFIC TRANSCRIPTION FACTOR LF-B1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'MVSKLSQLQTEL(MSE)AALLESGLSKEALIQALGE' _entity_poly.pdbx_seq_one_letter_code_can MVSKLSQLQTELMAALLESGLSKEALIQALGE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 SER n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLN n 1 8 LEU n 1 9 GLN n 1 10 THR n 1 11 GLU n 1 12 LEU n 1 13 MSE n 1 14 ALA n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 GLU n 1 19 SER n 1 20 GLY n 1 21 LEU n 1 22 SER n 1 23 LYS n 1 24 GLU n 1 25 ALA n 1 26 LEU n 1 27 ILE n 1 28 GLN n 1 29 ALA n 1 30 LEU n 1 31 GLY n 1 32 GLU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This peptide was chemically synthesized. The sequence of this peptide naturally occurs in mouse (Mus musculus), with a point mutation at position 13. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 MSE 13 13 13 MSE MSE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 GLU 32 32 32 GLU GLU A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLN 7 7 7 GLN GLN B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 GLN 9 9 9 GLN GLN B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 MSE 13 13 13 MSE MSE B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 ALA 15 15 15 ALA ALA B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 SER 19 19 19 SER SER B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 GLU 32 32 32 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 33 8 HOH WAT A . C 2 HOH 2 34 9 HOH WAT A . C 2 HOH 3 35 10 HOH WAT A . C 2 HOH 4 36 15 HOH WAT A . C 2 HOH 5 37 16 HOH WAT A . C 2 HOH 6 38 17 HOH WAT A . C 2 HOH 7 39 18 HOH WAT A . C 2 HOH 8 40 21 HOH WAT A . C 2 HOH 9 41 25 HOH WAT A . C 2 HOH 10 42 26 HOH WAT A . C 2 HOH 11 43 27 HOH WAT A . C 2 HOH 12 44 28 HOH WAT A . C 2 HOH 13 45 29 HOH WAT A . C 2 HOH 14 46 30 HOH WAT A . C 2 HOH 15 47 31 HOH WAT A . C 2 HOH 16 48 32 HOH WAT A . C 2 HOH 17 49 33 HOH WAT A . C 2 HOH 18 50 34 HOH WAT A . C 2 HOH 19 51 35 HOH WAT A . C 2 HOH 20 52 36 HOH WAT A . C 2 HOH 21 53 37 HOH WAT A . C 2 HOH 22 54 38 HOH WAT A . C 2 HOH 23 55 39 HOH WAT A . C 2 HOH 24 56 40 HOH WAT A . C 2 HOH 25 57 41 HOH WAT A . C 2 HOH 26 58 42 HOH WAT A . C 2 HOH 27 59 43 HOH WAT A . C 2 HOH 28 60 74 HOH WAT A . C 2 HOH 29 61 75 HOH WAT A . C 2 HOH 30 62 82 HOH WAT A . C 2 HOH 31 63 83 HOH WAT A . C 2 HOH 32 64 84 HOH WAT A . C 2 HOH 33 65 85 HOH WAT A . C 2 HOH 34 66 86 HOH WAT A . C 2 HOH 35 67 87 HOH WAT A . C 2 HOH 36 68 88 HOH WAT A . C 2 HOH 37 69 89 HOH WAT A . C 2 HOH 38 70 90 HOH WAT A . C 2 HOH 39 71 91 HOH WAT A . C 2 HOH 40 72 92 HOH WAT A . C 2 HOH 41 73 94 HOH WAT A . C 2 HOH 42 74 100 HOH WAT A . C 2 HOH 43 75 104 HOH WAT A . C 2 HOH 44 76 108 HOH WAT A . C 2 HOH 45 77 114 HOH WAT A . C 2 HOH 46 78 115 HOH WAT A . C 2 HOH 47 79 116 HOH WAT A . C 2 HOH 48 80 119 HOH WAT A . C 2 HOH 49 81 131 HOH WAT A . C 2 HOH 50 82 132 HOH WAT A . C 2 HOH 51 83 133 HOH WAT A . C 2 HOH 52 84 142 HOH WAT A . C 2 HOH 53 85 143 HOH WAT A . C 2 HOH 54 86 144 HOH WAT A . C 2 HOH 55 87 145 HOH WAT A . D 2 HOH 1 33 1 HOH WAT B . D 2 HOH 2 34 2 HOH WAT B . D 2 HOH 3 35 3 HOH WAT B . D 2 HOH 4 36 4 HOH WAT B . D 2 HOH 5 37 5 HOH WAT B . D 2 HOH 6 38 6 HOH WAT B . D 2 HOH 7 39 11 HOH WAT B . D 2 HOH 8 40 12 HOH WAT B . D 2 HOH 9 41 13 HOH WAT B . D 2 HOH 10 42 14 HOH WAT B . D 2 HOH 11 43 20 HOH WAT B . D 2 HOH 12 44 50 HOH WAT B . D 2 HOH 13 45 54 HOH WAT B . D 2 HOH 14 46 55 HOH WAT B . D 2 HOH 15 47 56 HOH WAT B . D 2 HOH 16 48 57 HOH WAT B . D 2 HOH 17 49 58 HOH WAT B . D 2 HOH 18 50 59 HOH WAT B . D 2 HOH 19 51 60 HOH WAT B . D 2 HOH 20 52 62 HOH WAT B . D 2 HOH 21 53 63 HOH WAT B . D 2 HOH 22 54 64 HOH WAT B . D 2 HOH 23 55 65 HOH WAT B . D 2 HOH 24 56 66 HOH WAT B . D 2 HOH 25 57 68 HOH WAT B . D 2 HOH 26 58 77 HOH WAT B . D 2 HOH 27 59 78 HOH WAT B . D 2 HOH 28 60 80 HOH WAT B . D 2 HOH 29 61 95 HOH WAT B . D 2 HOH 30 62 97 HOH WAT B . D 2 HOH 31 63 101 HOH WAT B . D 2 HOH 32 64 103 HOH WAT B . D 2 HOH 33 65 110 HOH WAT B . D 2 HOH 34 66 111 HOH WAT B . D 2 HOH 35 67 112 HOH WAT B . D 2 HOH 36 68 113 HOH WAT B . D 2 HOH 37 69 122 HOH WAT B . D 2 HOH 38 70 130 HOH WAT B . D 2 HOH 39 71 136 HOH WAT B . D 2 HOH 40 72 137 HOH WAT B . D 2 HOH 41 73 138 HOH WAT B . D 2 HOH 42 74 139 HOH WAT B . D 2 HOH 43 75 140 HOH WAT B . D 2 HOH 44 76 141 HOH WAT B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHARP phasing . ? 1 CNS refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 # _cell.entry_id 1G2Z _cell.length_a 37.100 _cell.length_b 41.200 _cell.length_c 42.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G2Z _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1G2Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.22 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 4000, Tris-HCl, lithium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1999-10-28 _diffrn_detector.details 'Double crystal' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.95372 1.0 2 0.97957 1.0 3 0.9798 1.0 4 1.00 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.95372, 0.97957, 0.9798, 1.00' # _reflns.entry_id 1G2Z _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 29.5 _reflns.d_resolution_high 1.15 _reflns.number_obs 22638 _reflns.number_all 22638 _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.0650000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 10.3 _reflns.pdbx_redundancy 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.19 _reflns_shell.percent_possible_all 90.0 _reflns_shell.Rmerge_I_obs 0.1800000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.7 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2032 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1G2Z _refine.ls_number_reflns_obs 22638 _refine.ls_number_reflns_all 22638 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 563662.01 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 29.50 _refine.ls_d_res_high 1.15 _refine.ls_percent_reflns_obs 96.0 _refine.ls_R_factor_obs 0.2160000 _refine.ls_R_factor_all 0.2160000 _refine.ls_R_factor_R_work 0.2160000 _refine.ls_R_factor_R_free 0.2430000 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1124 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 31.2 _refine.aniso_B[1][1] -1.65 _refine.aniso_B[2][2] 0.783 _refine.aniso_B[3][3] 0.869 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 97.28 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Refinement carried out in tnt. Statistics reported from CNS (input file: model_stats.list).' _refine.pdbx_starting_model 'wARP model' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1G2Z _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.16 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 462 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 561 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 29.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.369 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.790 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 4.63 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 10.57 2.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 9.72 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 19.46 2.50 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 21.70 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.15 _refine_ls_shell.d_res_low 1.19 _refine_ls_shell.number_reflns_R_work 3970 _refine_ls_shell.R_factor_R_work 0.3500000 _refine_ls_shell.percent_reflns_obs 90 _refine_ls_shell.R_factor_R_free 0.3100000 _refine_ls_shell.R_factor_R_free_error 0.007 _refine_ls_shell.percent_reflns_R_free 5.3 _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_obs 2032 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1G2Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1G2Z _struct.title 'DIMERIZATION DOMAIN OF HNF-1ALPHA WITH A LEU 13 SELENOMETHIONINE SUBSTITUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1G2Z _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'dimerization domain, four-helix bundle, transcription factor, selenomethionine, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNF1A_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MVSKLSQLQTELLAALLESGLSKEALIQALGE _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P22361 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1G2Z A 1 ? 32 ? P22361 1 ? 32 ? 1 32 2 1 1G2Z B 1 ? 32 ? P22361 1 ? 32 ? 1 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1G2Z MSE A 13 ? UNP P22361 LEU 13 'engineered mutation' 13 1 2 1G2Z MSE B 13 ? UNP P22361 LEU 13 'engineered mutation' 13 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4680 ? 1 MORE -53 ? 1 'SSA (A^2)' 7470 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 74.2000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;Two monomers are in the asymmetric unit, although not the biologically relevant dimer. The dimer of each of the monomers is generated by the two fold axis: -x+2, -y, z. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? SER A 19 ? SER A 3 SER A 19 1 ? 17 HELX_P HELX_P2 2 SER A 22 ? GLY A 31 ? SER A 22 GLY A 31 1 ? 10 HELX_P HELX_P3 3 VAL B 2 ? SER B 19 ? VAL B 2 SER B 19 1 ? 18 HELX_P HELX_P4 4 SER B 22 ? GLY B 31 ? SER B 22 GLY B 31 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 12 C ? ? ? 1_555 A MSE 13 N ? ? A LEU 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A ALA 14 N ? ? A MSE 13 A ALA 14 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale both ? B LEU 12 C ? ? ? 1_555 B MSE 13 N ? ? B LEU 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale4 covale both ? B MSE 13 C ? ? ? 1_555 B ALA 14 N ? ? B MSE 13 B ALA 14 1_555 ? ? ? ? ? ? ? 1.312 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 VAL _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 6 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CE A LYS 23 ? ? 1_555 CD1 B ILE 27 ? ? 2_756 0.74 2 1 NZ A LYS 23 ? ? 1_555 CD1 B ILE 27 ? ? 2_756 1.51 3 1 CE A LYS 23 ? ? 1_555 CG1 B ILE 27 ? ? 2_756 1.88 4 1 NZ A LYS 23 ? ? 1_555 CG1 B ILE 27 ? ? 2_756 2.01 5 1 CD A LYS 23 ? ? 1_555 CD1 B ILE 27 ? ? 2_756 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 24 ? ? OE2 A GLU 24 ? ? 1.325 1.252 0.073 0.011 N 2 1 CD A GLU 32 ? ? OE2 A GLU 32 ? ? 1.318 1.252 0.066 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A MET 1 ? ? CB A MET 1 ? ? CG A MET 1 ? ? 101.30 113.30 -12.00 1.70 N 2 1 N B SER 3 ? ? CA B SER 3 ? ? CB B SER 3 ? ? 127.12 110.50 16.62 1.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -39.51 _pdbx_validate_torsion.psi -73.11 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? B VAL 2 ? PLANAR . 2 1 CA ? B SER 3 ? PLANAR . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 13 ? MET SELENOMETHIONINE 2 B MSE 13 B MSE 13 ? MET SELENOMETHIONINE # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLN N N N N 14 GLN CA C N S 15 GLN C C N N 16 GLN O O N N 17 GLN CB C N N 18 GLN CG C N N 19 GLN CD C N N 20 GLN OE1 O N N 21 GLN NE2 N N N 22 GLN OXT O N N 23 GLN H H N N 24 GLN H2 H N N 25 GLN HA H N N 26 GLN HB2 H N N 27 GLN HB3 H N N 28 GLN HG2 H N N 29 GLN HG3 H N N 30 GLN HE21 H N N 31 GLN HE22 H N N 32 GLN HXT H N N 33 GLU N N N N 34 GLU CA C N S 35 GLU C C N N 36 GLU O O N N 37 GLU CB C N N 38 GLU CG C N N 39 GLU CD C N N 40 GLU OE1 O N N 41 GLU OE2 O N N 42 GLU OXT O N N 43 GLU H H N N 44 GLU H2 H N N 45 GLU HA H N N 46 GLU HB2 H N N 47 GLU HB3 H N N 48 GLU HG2 H N N 49 GLU HG3 H N N 50 GLU HE2 H N N 51 GLU HXT H N N 52 GLY N N N N 53 GLY CA C N N 54 GLY C C N N 55 GLY O O N N 56 GLY OXT O N N 57 GLY H H N N 58 GLY H2 H N N 59 GLY HA2 H N N 60 GLY HA3 H N N 61 GLY HXT H N N 62 HOH O O N N 63 HOH H1 H N N 64 HOH H2 H N N 65 ILE N N N N 66 ILE CA C N S 67 ILE C C N N 68 ILE O O N N 69 ILE CB C N S 70 ILE CG1 C N N 71 ILE CG2 C N N 72 ILE CD1 C N N 73 ILE OXT O N N 74 ILE H H N N 75 ILE H2 H N N 76 ILE HA H N N 77 ILE HB H N N 78 ILE HG12 H N N 79 ILE HG13 H N N 80 ILE HG21 H N N 81 ILE HG22 H N N 82 ILE HG23 H N N 83 ILE HD11 H N N 84 ILE HD12 H N N 85 ILE HD13 H N N 86 ILE HXT H N N 87 LEU N N N N 88 LEU CA C N S 89 LEU C C N N 90 LEU O O N N 91 LEU CB C N N 92 LEU CG C N N 93 LEU CD1 C N N 94 LEU CD2 C N N 95 LEU OXT O N N 96 LEU H H N N 97 LEU H2 H N N 98 LEU HA H N N 99 LEU HB2 H N N 100 LEU HB3 H N N 101 LEU HG H N N 102 LEU HD11 H N N 103 LEU HD12 H N N 104 LEU HD13 H N N 105 LEU HD21 H N N 106 LEU HD22 H N N 107 LEU HD23 H N N 108 LEU HXT H N N 109 LYS N N N N 110 LYS CA C N S 111 LYS C C N N 112 LYS O O N N 113 LYS CB C N N 114 LYS CG C N N 115 LYS CD C N N 116 LYS CE C N N 117 LYS NZ N N N 118 LYS OXT O N N 119 LYS H H N N 120 LYS H2 H N N 121 LYS HA H N N 122 LYS HB2 H N N 123 LYS HB3 H N N 124 LYS HG2 H N N 125 LYS HG3 H N N 126 LYS HD2 H N N 127 LYS HD3 H N N 128 LYS HE2 H N N 129 LYS HE3 H N N 130 LYS HZ1 H N N 131 LYS HZ2 H N N 132 LYS HZ3 H N N 133 LYS HXT H N N 134 MET N N N N 135 MET CA C N S 136 MET C C N N 137 MET O O N N 138 MET CB C N N 139 MET CG C N N 140 MET SD S N N 141 MET CE C N N 142 MET OXT O N N 143 MET H H N N 144 MET H2 H N N 145 MET HA H N N 146 MET HB2 H N N 147 MET HB3 H N N 148 MET HG2 H N N 149 MET HG3 H N N 150 MET HE1 H N N 151 MET HE2 H N N 152 MET HE3 H N N 153 MET HXT H N N 154 MSE N N N N 155 MSE CA C N S 156 MSE C C N N 157 MSE O O N N 158 MSE OXT O N N 159 MSE CB C N N 160 MSE CG C N N 161 MSE SE SE N N 162 MSE CE C N N 163 MSE H H N N 164 MSE H2 H N N 165 MSE HA H N N 166 MSE HXT H N N 167 MSE HB2 H N N 168 MSE HB3 H N N 169 MSE HG2 H N N 170 MSE HG3 H N N 171 MSE HE1 H N N 172 MSE HE2 H N N 173 MSE HE3 H N N 174 SER N N N N 175 SER CA C N S 176 SER C C N N 177 SER O O N N 178 SER CB C N N 179 SER OG O N N 180 SER OXT O N N 181 SER H H N N 182 SER H2 H N N 183 SER HA H N N 184 SER HB2 H N N 185 SER HB3 H N N 186 SER HG H N N 187 SER HXT H N N 188 THR N N N N 189 THR CA C N S 190 THR C C N N 191 THR O O N N 192 THR CB C N R 193 THR OG1 O N N 194 THR CG2 C N N 195 THR OXT O N N 196 THR H H N N 197 THR H2 H N N 198 THR HA H N N 199 THR HB H N N 200 THR HG1 H N N 201 THR HG21 H N N 202 THR HG22 H N N 203 THR HG23 H N N 204 THR HXT H N N 205 VAL N N N N 206 VAL CA C N S 207 VAL C C N N 208 VAL O O N N 209 VAL CB C N N 210 VAL CG1 C N N 211 VAL CG2 C N N 212 VAL OXT O N N 213 VAL H H N N 214 VAL H2 H N N 215 VAL HA H N N 216 VAL HB H N N 217 VAL HG11 H N N 218 VAL HG12 H N N 219 VAL HG13 H N N 220 VAL HG21 H N N 221 VAL HG22 H N N 222 VAL HG23 H N N 223 VAL HXT H N N 224 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLN N CA sing N N 13 GLN N H sing N N 14 GLN N H2 sing N N 15 GLN CA C sing N N 16 GLN CA CB sing N N 17 GLN CA HA sing N N 18 GLN C O doub N N 19 GLN C OXT sing N N 20 GLN CB CG sing N N 21 GLN CB HB2 sing N N 22 GLN CB HB3 sing N N 23 GLN CG CD sing N N 24 GLN CG HG2 sing N N 25 GLN CG HG3 sing N N 26 GLN CD OE1 doub N N 27 GLN CD NE2 sing N N 28 GLN NE2 HE21 sing N N 29 GLN NE2 HE22 sing N N 30 GLN OXT HXT sing N N 31 GLU N CA sing N N 32 GLU N H sing N N 33 GLU N H2 sing N N 34 GLU CA C sing N N 35 GLU CA CB sing N N 36 GLU CA HA sing N N 37 GLU C O doub N N 38 GLU C OXT sing N N 39 GLU CB CG sing N N 40 GLU CB HB2 sing N N 41 GLU CB HB3 sing N N 42 GLU CG CD sing N N 43 GLU CG HG2 sing N N 44 GLU CG HG3 sing N N 45 GLU CD OE1 doub N N 46 GLU CD OE2 sing N N 47 GLU OE2 HE2 sing N N 48 GLU OXT HXT sing N N 49 GLY N CA sing N N 50 GLY N H sing N N 51 GLY N H2 sing N N 52 GLY CA C sing N N 53 GLY CA HA2 sing N N 54 GLY CA HA3 sing N N 55 GLY C O doub N N 56 GLY C OXT sing N N 57 GLY OXT HXT sing N N 58 HOH O H1 sing N N 59 HOH O H2 sing N N 60 ILE N CA sing N N 61 ILE N H sing N N 62 ILE N H2 sing N N 63 ILE CA C sing N N 64 ILE CA CB sing N N 65 ILE CA HA sing N N 66 ILE C O doub N N 67 ILE C OXT sing N N 68 ILE CB CG1 sing N N 69 ILE CB CG2 sing N N 70 ILE CB HB sing N N 71 ILE CG1 CD1 sing N N 72 ILE CG1 HG12 sing N N 73 ILE CG1 HG13 sing N N 74 ILE CG2 HG21 sing N N 75 ILE CG2 HG22 sing N N 76 ILE CG2 HG23 sing N N 77 ILE CD1 HD11 sing N N 78 ILE CD1 HD12 sing N N 79 ILE CD1 HD13 sing N N 80 ILE OXT HXT sing N N 81 LEU N CA sing N N 82 LEU N H sing N N 83 LEU N H2 sing N N 84 LEU CA C sing N N 85 LEU CA CB sing N N 86 LEU CA HA sing N N 87 LEU C O doub N N 88 LEU C OXT sing N N 89 LEU CB CG sing N N 90 LEU CB HB2 sing N N 91 LEU CB HB3 sing N N 92 LEU CG CD1 sing N N 93 LEU CG CD2 sing N N 94 LEU CG HG sing N N 95 LEU CD1 HD11 sing N N 96 LEU CD1 HD12 sing N N 97 LEU CD1 HD13 sing N N 98 LEU CD2 HD21 sing N N 99 LEU CD2 HD22 sing N N 100 LEU CD2 HD23 sing N N 101 LEU OXT HXT sing N N 102 LYS N CA sing N N 103 LYS N H sing N N 104 LYS N H2 sing N N 105 LYS CA C sing N N 106 LYS CA CB sing N N 107 LYS CA HA sing N N 108 LYS C O doub N N 109 LYS C OXT sing N N 110 LYS CB CG sing N N 111 LYS CB HB2 sing N N 112 LYS CB HB3 sing N N 113 LYS CG CD sing N N 114 LYS CG HG2 sing N N 115 LYS CG HG3 sing N N 116 LYS CD CE sing N N 117 LYS CD HD2 sing N N 118 LYS CD HD3 sing N N 119 LYS CE NZ sing N N 120 LYS CE HE2 sing N N 121 LYS CE HE3 sing N N 122 LYS NZ HZ1 sing N N 123 LYS NZ HZ2 sing N N 124 LYS NZ HZ3 sing N N 125 LYS OXT HXT sing N N 126 MET N CA sing N N 127 MET N H sing N N 128 MET N H2 sing N N 129 MET CA C sing N N 130 MET CA CB sing N N 131 MET CA HA sing N N 132 MET C O doub N N 133 MET C OXT sing N N 134 MET CB CG sing N N 135 MET CB HB2 sing N N 136 MET CB HB3 sing N N 137 MET CG SD sing N N 138 MET CG HG2 sing N N 139 MET CG HG3 sing N N 140 MET SD CE sing N N 141 MET CE HE1 sing N N 142 MET CE HE2 sing N N 143 MET CE HE3 sing N N 144 MET OXT HXT sing N N 145 MSE N CA sing N N 146 MSE N H sing N N 147 MSE N H2 sing N N 148 MSE CA C sing N N 149 MSE CA CB sing N N 150 MSE CA HA sing N N 151 MSE C O doub N N 152 MSE C OXT sing N N 153 MSE OXT HXT sing N N 154 MSE CB CG sing N N 155 MSE CB HB2 sing N N 156 MSE CB HB3 sing N N 157 MSE CG SE sing N N 158 MSE CG HG2 sing N N 159 MSE CG HG3 sing N N 160 MSE SE CE sing N N 161 MSE CE HE1 sing N N 162 MSE CE HE2 sing N N 163 MSE CE HE3 sing N N 164 SER N CA sing N N 165 SER N H sing N N 166 SER N H2 sing N N 167 SER CA C sing N N 168 SER CA CB sing N N 169 SER CA HA sing N N 170 SER C O doub N N 171 SER C OXT sing N N 172 SER CB OG sing N N 173 SER CB HB2 sing N N 174 SER CB HB3 sing N N 175 SER OG HG sing N N 176 SER OXT HXT sing N N 177 THR N CA sing N N 178 THR N H sing N N 179 THR N H2 sing N N 180 THR CA C sing N N 181 THR CA CB sing N N 182 THR CA HA sing N N 183 THR C O doub N N 184 THR C OXT sing N N 185 THR CB OG1 sing N N 186 THR CB CG2 sing N N 187 THR CB HB sing N N 188 THR OG1 HG1 sing N N 189 THR CG2 HG21 sing N N 190 THR CG2 HG22 sing N N 191 THR CG2 HG23 sing N N 192 THR OXT HXT sing N N 193 VAL N CA sing N N 194 VAL N H sing N N 195 VAL N H2 sing N N 196 VAL CA C sing N N 197 VAL CA CB sing N N 198 VAL CA HA sing N N 199 VAL C O doub N N 200 VAL C OXT sing N N 201 VAL CB CG1 sing N N 202 VAL CB CG2 sing N N 203 VAL CB HB sing N N 204 VAL CG1 HG11 sing N N 205 VAL CG1 HG12 sing N N 206 VAL CG1 HG13 sing N N 207 VAL CG2 HG21 sing N N 208 VAL CG2 HG22 sing N N 209 VAL CG2 HG23 sing N N 210 VAL OXT HXT sing N N 211 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'wARP model' # _atom_sites.entry_id 1G2Z _atom_sites.fract_transf_matrix[1][1] 0.026954 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023753 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_