HEADER TRANSFERASE 24-OCT-00 1G3G TITLE NMR STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE SPK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE N-TERMINAL FHA DOMAIN (FHA1), RESIDUES 1-164; COMPND 5 SYNONYM: SERINE-PROTEIN KINASE 1; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SPK1 OR RAD53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T KEYWDS FHA DOMAIN, RAD53, PHOSPHOPEPTIDE, PHOSPHOPROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.YUAN,H.LIAO,M.SU,S.YONGKIETTRAKUL,I.-J.L.BYEON,M.-D.TSAI REVDAT 6 22-MAY-24 1G3G 1 REMARK REVDAT 5 03-NOV-21 1G3G 1 SEQADV REVDAT 4 02-SEP-20 1G3G 1 COMPND REMARK ATOM REVDAT 3 24-FEB-09 1G3G 1 VERSN REVDAT 2 01-APR-03 1G3G 1 JRNL REVDAT 1 10-JAN-01 1G3G 0 JRNL AUTH H.LIAO,C.YUAN,M.I.SU,S.YONGKIETTRAKUL,D.QIN,H.LI,I.J.BYEON, JRNL AUTH 2 D.PEI,M.D.TSAI JRNL TITL STRUCTURE OF THE FHA1 DOMAIN OF YEAST RAD53 AND JRNL TITL 2 IDENTIFICATION OF BINDING SITES FOR BOTH FHA1 AND ITS TARGET JRNL TITL 3 PROTEIN RAD9 JRNL REF J.MOL.BIOL. V. 304 941 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 11124038 JRNL DOI 10.1006/JMBI.2000.4291 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2156 RESTRAINTS, 1886 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 192 REMARK 3 TALOS-DERIVED DIHEDRAL ANGLE RESTRAINTS,78 DISTANCE RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. RESIDUES 1-14 ARE POORLY DEFINED BY THE REMARK 3 EXPERIMENTAL DATA. THUS, NO MEANING SHOULD BE GIVEN TO THOSE REMARK 3 RESIDUES' COORDINATES. REMARK 4 REMARK 4 1G3G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE, 1 MM REMARK 210 DTT, AND 1 MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN U-15N, 13C; 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER (PH 6.5), REMARK 210 1 MM DTT, AND 1 MM EDTA; 95 % REMARK 210 H2O, 5 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 66 H ILE A 91 1.49 REMARK 500 O ASN A 86 H HIS A 88 1.52 REMARK 500 O ARG A 35 H PHE A 146 1.57 REMARK 500 H VAL A 132 O LEU A 141 1.58 REMARK 500 H TRP A 66 O ILE A 91 1.59 REMARK 500 O HIS A 88 O ILE A 104 1.76 REMARK 500 C HIS A 88 O ILE A 104 2.01 REMARK 500 O ASN A 86 N HIS A 88 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 10 -73.70 -146.19 REMARK 500 1 GLN A 13 147.80 -170.60 REMARK 500 1 THR A 15 -65.96 -125.75 REMARK 500 1 GLN A 25 95.22 -56.36 REMARK 500 1 ILE A 45 109.59 -42.19 REMARK 500 1 GLU A 58 164.91 57.14 REMARK 500 1 LYS A 59 -72.92 65.47 REMARK 500 1 ILE A 62 61.89 178.26 REMARK 500 1 ALA A 73 54.22 136.91 REMARK 500 1 ARG A 83 -103.72 -89.94 REMARK 500 1 SER A 85 -48.98 162.02 REMARK 500 1 ASN A 86 -162.84 -59.79 REMARK 500 1 LYS A 87 71.08 -44.99 REMARK 500 1 GLU A 95 78.85 63.18 REMARK 500 1 ASN A 98 178.33 -56.74 REMARK 500 1 ASN A 119 39.54 33.90 REMARK 500 1 ASN A 158 63.09 -116.00 REMARK 500 1 ARG A 162 38.56 -141.96 REMARK 500 2 GLN A 9 -172.98 61.69 REMARK 500 2 SER A 11 -168.50 52.72 REMARK 500 2 THR A 15 -55.26 -161.62 REMARK 500 2 ASP A 51 78.56 -108.22 REMARK 500 2 SER A 61 -97.24 -81.15 REMARK 500 2 LYS A 63 77.67 -159.03 REMARK 500 2 ALA A 73 53.62 136.71 REMARK 500 2 CYS A 74 -70.07 -52.56 REMARK 500 2 ARG A 83 -106.11 -88.21 REMARK 500 2 SER A 85 -48.94 162.11 REMARK 500 2 ASN A 86 -152.57 -63.32 REMARK 500 2 LYS A 87 72.80 -48.54 REMARK 500 2 GLU A 95 -70.40 67.76 REMARK 500 2 ASP A 96 52.86 -143.15 REMARK 500 2 ASN A 98 -170.27 -57.67 REMARK 500 2 ASN A 119 39.50 35.41 REMARK 500 2 ASP A 161 92.77 -57.59 REMARK 500 3 ASN A 3 51.41 -158.28 REMARK 500 3 ILE A 4 -65.51 -121.33 REMARK 500 3 THR A 15 -48.69 -140.84 REMARK 500 3 GLN A 42 -66.95 -159.35 REMARK 500 3 ASP A 51 63.44 -105.47 REMARK 500 3 SER A 61 -163.44 61.50 REMARK 500 3 ILE A 62 86.62 71.93 REMARK 500 3 LYS A 63 71.24 179.83 REMARK 500 3 ALA A 73 51.60 135.99 REMARK 500 3 ARG A 83 -110.13 -85.32 REMARK 500 3 SER A 85 -45.63 161.86 REMARK 500 3 ASN A 86 -149.65 -64.68 REMARK 500 3 LYS A 87 72.02 -49.58 REMARK 500 3 GLU A 95 88.59 57.75 REMARK 500 3 ASN A 98 176.60 61.66 REMARK 500 REMARK 500 THIS ENTRY HAS 388 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1G3G A 1 164 UNP P22216 RAD53_YEAST 1 164 SEQADV 1G3G GLY A 1 UNP P22216 MET 1 ENGINEERED MUTATION SEQRES 1 A 164 GLY GLU ASN ILE THR GLN PRO THR GLN GLN SER THR GLN SEQRES 2 A 164 ALA THR GLN ARG PHE LEU ILE GLU LYS PHE SER GLN GLU SEQRES 3 A 164 GLN ILE GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR SEQRES 4 A 164 THR GLY GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE SEQRES 5 A 164 SER GLN VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL SEQRES 6 A 164 TRP THR PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU SEQRES 7 A 164 GLY ASN ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE SEQRES 8 A 164 LEU LEU GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE SEQRES 9 A 164 SER THR ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU SEQRES 10 A 164 LYS ASN SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE SEQRES 11 A 164 THR VAL GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU SEQRES 12 A 164 VAL ILE PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU SEQRES 13 A 164 GLN ASN LYS VAL ASP ARG ILE ARG HELIX 1 1 THR A 15 GLN A 25 1 11 HELIX 2 2 ASP A 51 GLU A 58 1 8 HELIX 3 3 ASN A 148 ASN A 158 1 11 SHEET 1 A 6 ARG A 46 LEU A 48 0 SHEET 2 A 6 CYS A 34 ILE A 37 -1 N CYS A 34 O LEU A 48 SHEET 3 A 6 LEU A 141 ILE A 147 -1 O VAL A 144 N ILE A 37 SHEET 4 A 6 GLU A 129 VAL A 132 -1 N ILE A 130 O LEU A 143 SHEET 5 A 6 THR A 109 LEU A 111 -1 N TRP A 110 O THR A 131 SHEET 6 A 6 GLN A 114 VAL A 116 -1 O GLN A 114 N LEU A 111 SHEET 1 B 5 TYR A 76 HIS A 77 0 SHEET 2 B 5 LYS A 64 GLY A 69 1 O THR A 67 N TYR A 76 SHEET 3 B 5 PHE A 89 LEU A 93 -1 O PHE A 89 N PHE A 68 SHEET 4 B 5 LEU A 99 ASP A 103 -1 N LEU A 100 O LEU A 92 SHEET 5 B 5 SER A 120 LEU A 123 -1 O SER A 120 N ASP A 103 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1