data_1G3V # _entry.id 1G3V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1G3V pdb_00001g3v 10.2210/pdb1g3v/pdb NDB BD0042 ? ? RCSB RCSB012199 ? ? WWPDB D_1000012199 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-01-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_symmetry' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1G3V _pdbx_database_status.recvd_initial_deposition_date 2000-10-25 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB ud0004 ;STRUCTURE OF THE OLIGONUCLEOTIDE D(CGTATATACG) AS A SITE SPECIFIC COMPLEX WITH NICKEL IONS ; unspecified NDB dd0016 ;NI2+/GUANINE INTERACTIONS AND NETROPSIN/GUANINE STACKING IN D(CGTATATACG)2 ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Subirana, J.A.' 1 'Abrescia, N.G.A.' 2 # _citation.id primary _citation.title 'Nickel-guanine interactions in DNA: crystal structure of nickel-d[CGTGTACACG]2.' _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 7 _citation.page_first 195 _citation.page_last 199 _citation.year 2002 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11862555 _citation.pdbx_database_id_DOI 10.1007/s007750100286 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abrescia, N.A.' 1 ? primary 'Huynh-Dinh, T.' 2 ? primary 'Subirana, J.A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3'" 3045.004 4 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 8 ? ? ? ? 3 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTGTACACG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DA n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DT 3 13 13 DT T B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DA 8 18 18 DA A B . n B 1 9 DC 9 19 19 DC C B . n B 1 10 DG 10 20 20 DG G B . n C 1 1 DC 1 21 21 DC C C . n C 1 2 DG 2 22 22 DG G C . n C 1 3 DT 3 23 23 DT T C . n C 1 4 DG 4 24 24 DG G C . n C 1 5 DT 5 25 25 DT T C . n C 1 6 DA 6 26 26 DA A C . n C 1 7 DC 7 27 27 DC C C . n C 1 8 DA 8 28 28 DA A C . n C 1 9 DC 9 29 29 DC C C . n C 1 10 DG 10 30 30 DG G C . n D 1 1 DC 1 31 31 DC C D . n D 1 2 DG 2 32 32 DG G D . n D 1 3 DT 3 33 33 DT T D . n D 1 4 DG 4 34 34 DG G D . n D 1 5 DT 5 35 35 DT T D . n D 1 6 DA 6 36 36 DA A D . n D 1 7 DC 7 37 37 DC C D . n D 1 8 DA 8 38 38 DA A D . n D 1 9 DC 9 39 39 DC C D . n D 1 10 DG 10 40 40 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NI 1 100 81 NI NI2 A . F 2 NI 1 300 83 NI NI2 A . G 2 NI 1 700 87 NI NI2 A . H 2 NI 1 200 82 NI NI2 B . I 2 NI 1 600 86 NI NI2 B . J 2 NI 1 800 88 NI NI2 C . K 2 NI 1 400 84 NI NI2 D . L 2 NI 1 500 85 NI NI2 D . M 3 HOH 1 50 50 HOH HOH A . M 3 HOH 2 53 53 HOH HOH A . M 3 HOH 3 54 54 HOH HOH A . M 3 HOH 4 55 55 HOH HOH A . M 3 HOH 5 56 56 HOH HOH A . M 3 HOH 6 57 57 HOH HOH A . M 3 HOH 7 101 801 HOH HO2 A . M 3 HOH 8 102 801 HOH HO2 A . M 3 HOH 9 103 801 HOH HO2 A . M 3 HOH 10 104 801 HOH HO2 A . M 3 HOH 11 301 601 HOH HO2 A . M 3 HOH 12 302 601 HOH HO2 A . M 3 HOH 13 303 601 HOH HO2 A . M 3 HOH 14 304 601 HOH HO2 A . M 3 HOH 15 305 601 HOH HO2 A . M 3 HOH 16 701 201 HOH HO2 A . M 3 HOH 17 702 201 HOH HO2 A . M 3 HOH 18 703 201 HOH HO2 A . M 3 HOH 19 704 201 HOH HO2 A . M 3 HOH 20 705 201 HOH HO2 A . M 3 HOH 21 706 201 HOH HO2 A . N 3 HOH 1 51 51 HOH HOH B . N 3 HOH 2 58 58 HOH HOH B . N 3 HOH 3 201 701 HOH HO2 B . N 3 HOH 4 202 701 HOH HO2 B . N 3 HOH 5 203 701 HOH HO2 B . N 3 HOH 6 204 701 HOH HO2 B . N 3 HOH 7 205 701 HOH HO2 B . N 3 HOH 8 601 301 HOH HO2 B . N 3 HOH 9 602 301 HOH HO2 B . N 3 HOH 10 603 301 HOH HO2 B . N 3 HOH 11 604 301 HOH HO2 B . N 3 HOH 12 605 301 HOH HO2 B . O 3 HOH 1 52 52 HOH HOH C . O 3 HOH 2 59 59 HOH HOH C . O 3 HOH 3 60 60 HOH HOH C . O 3 HOH 4 801 101 HOH HO2 C . O 3 HOH 5 802 101 HOH HO2 C . O 3 HOH 6 803 101 HOH HO2 C . O 3 HOH 7 804 101 HOH HO2 C . O 3 HOH 8 805 101 HOH HO2 C . P 3 HOH 1 61 61 HOH HOH D . P 3 HOH 2 401 501 HOH HO2 D . P 3 HOH 3 402 501 HOH HO2 D . P 3 HOH 4 403 501 HOH HO2 D . P 3 HOH 5 404 501 HOH HO2 D . P 3 HOH 6 405 501 HOH HO2 D . P 3 HOH 7 501 401 HOH HO2 D . P 3 HOH 8 502 401 HOH HO2 D . P 3 HOH 9 503 401 HOH HO2 D . P 3 HOH 10 504 401 HOH HO2 D . P 3 HOH 11 505 401 HOH HO2 D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'" 3 1 Y 1 A DC 1 ? N1 ? A DC 1 N1 4 1 Y 1 A DC 1 ? C2 ? A DC 1 C2 5 1 Y 1 A DC 1 ? O2 ? A DC 1 O2 6 1 Y 1 A DC 1 ? N3 ? A DC 1 N3 7 1 Y 1 A DC 1 ? C4 ? A DC 1 C4 8 1 Y 1 A DC 1 ? N4 ? A DC 1 N4 9 1 Y 1 A DC 1 ? C5 ? A DC 1 C5 10 1 Y 1 A DC 1 ? C6 ? A DC 1 C6 11 1 Y 1 B DC 11 ? "O5'" ? B DC 1 "O5'" 12 1 Y 1 B DC 11 ? "C5'" ? B DC 1 "C5'" 13 1 Y 1 B DC 11 ? "C4'" ? B DC 1 "C4'" 14 1 Y 1 B DC 11 ? "O4'" ? B DC 1 "O4'" 15 1 Y 1 B DC 11 ? "C2'" ? B DC 1 "C2'" 16 1 Y 1 B DC 11 ? "C1'" ? B DC 1 "C1'" 17 1 Y 1 B DC 11 ? N1 ? B DC 1 N1 18 1 Y 1 B DC 11 ? C2 ? B DC 1 C2 19 1 Y 1 B DC 11 ? O2 ? B DC 1 O2 20 1 Y 1 B DC 11 ? N3 ? B DC 1 N3 21 1 Y 1 B DC 11 ? C4 ? B DC 1 C4 22 1 Y 1 B DC 11 ? N4 ? B DC 1 N4 23 1 Y 1 B DC 11 ? C5 ? B DC 1 C5 24 1 Y 1 B DC 11 ? C6 ? B DC 1 C6 25 1 Y 1 C DC 21 ? "O5'" ? C DC 1 "O5'" 26 1 Y 1 C DC 21 ? "C5'" ? C DC 1 "C5'" 27 1 Y 1 C DC 21 ? "C4'" ? C DC 1 "C4'" 28 1 Y 1 C DC 21 ? "O4'" ? C DC 1 "O4'" 29 1 Y 1 C DC 21 ? "C3'" ? C DC 1 "C3'" 30 1 Y 1 C DC 21 ? "C2'" ? C DC 1 "C2'" 31 1 Y 1 C DC 21 ? "C1'" ? C DC 1 "C1'" 32 1 Y 1 C DC 21 ? N1 ? C DC 1 N1 33 1 Y 1 C DC 21 ? C2 ? C DC 1 C2 34 1 Y 1 C DC 21 ? O2 ? C DC 1 O2 35 1 Y 1 C DC 21 ? N3 ? C DC 1 N3 36 1 Y 1 C DC 21 ? C4 ? C DC 1 C4 37 1 Y 1 C DC 21 ? N4 ? C DC 1 N4 38 1 Y 1 C DC 21 ? C5 ? C DC 1 C5 39 1 Y 1 C DC 21 ? C6 ? C DC 1 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 0.9 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1G3V _cell.length_a 53.031 _cell.length_b 53.031 _cell.length_c 97.787 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1G3V _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1G3V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.59 _exptl_crystal.density_Matthews 2.71 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6 _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'DNA, NiCl2, MPD, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 20K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 DNA ? ? ? 1 2 1 NiCl2 ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-11-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9058 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_wavelength 0.9058 _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1G3V _reflns.observed_criterion_sigma_I 2.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 3.1 _reflns.number_obs 2843 _reflns.number_all 2843 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.1000000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.2 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.1 _reflns_shell.d_res_low 3.18 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.4900000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 213 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1G3V _refine.ls_number_reflns_obs 2472 _refine.ls_number_reflns_all 2472 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 3.1 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2090000 _refine.ls_R_factor_R_free 0.2700000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 230 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'maximum likelihood target function' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;G. Parkinson, J. Vojtechovsky, L. Clowney, A.T. Brunger, H.M. Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996). ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 769 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 829 _refine_hist.d_res_high 3.1 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1G3V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1G3V _struct.title 'CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1G3V _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'nickel binding, B-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1G3V _struct_ref.pdbx_db_accession 1G3V _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1G3V A 1 ? 10 ? 1G3V 1 ? 10 ? 1 10 2 1 1G3V B 1 ? 10 ? 1G3V 11 ? 20 ? 11 20 3 1 1G3V C 1 ? 10 ? 1G3V 21 ? 30 ? 21 30 4 1 1G3V D 1 ? 10 ? 1G3V 31 ? 40 ? 31 40 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,M,N 2 1 C,D,J,K,L,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 F NI . NI ? ? A DG 2 A NI 300 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc2 metalc ? ? A DG 10 N7 ? ? ? 1_555 E NI . NI ? ? A DG 10 A NI 100 1_555 ? ? ? ? ? ? ? 1.969 ? ? metalc3 metalc ? ? E NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 100 A HOH 101 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc4 metalc ? ? E NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 100 A HOH 102 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc5 metalc ? ? E NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 100 A HOH 103 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc6 metalc ? ? E NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 100 A HOH 104 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc7 metalc ? ? E NI . NI ? ? ? 1_555 C DG 10 N7 ? ? A NI 100 C DG 30 3_545 ? ? ? ? ? ? ? 2.066 ? ? metalc8 metalc ? ? F NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 300 A HOH 301 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc9 metalc ? ? F NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 300 A HOH 302 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc10 metalc ? ? F NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 300 A HOH 303 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc11 metalc ? ? F NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 300 A HOH 304 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc12 metalc ? ? F NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 300 A HOH 305 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc13 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 701 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc14 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 702 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc15 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 703 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc16 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 704 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc17 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 705 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc18 metalc ? ? G NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 700 A HOH 706 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc19 metalc ? ? B DG 2 N7 ? ? ? 1_555 I NI . NI ? ? B DG 12 B NI 600 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc20 metalc ? ? B DG 10 N7 ? ? ? 1_555 H NI . NI ? ? B DG 20 B NI 200 1_555 ? ? ? ? ? ? ? 1.952 ? ? metalc21 metalc ? ? H NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 200 B HOH 201 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc22 metalc ? ? H NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 200 B HOH 202 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc23 metalc ? ? H NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 200 B HOH 203 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc24 metalc ? ? H NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 200 B HOH 204 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc25 metalc ? ? H NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 200 B HOH 205 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc26 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 600 B HOH 601 1_555 ? ? ? ? ? ? ? 2.035 ? ? metalc27 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 600 B HOH 602 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc28 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 600 B HOH 603 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc29 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 600 B HOH 604 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc30 metalc ? ? I NI . NI ? ? ? 1_555 N HOH . O ? ? B NI 600 B HOH 605 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc31 metalc ? ? C DG 2 N7 ? ? ? 1_555 J NI . NI ? ? C DG 22 C NI 800 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc32 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? C NI 800 C HOH 801 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc33 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? C NI 800 C HOH 802 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc34 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? C NI 800 C HOH 803 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc35 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? C NI 800 C HOH 804 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc36 metalc ? ? J NI . NI ? ? ? 1_555 O HOH . O ? ? C NI 800 C HOH 805 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc37 metalc ? ? D DG 2 N7 ? ? ? 1_555 L NI . NI ? ? D DG 32 D NI 500 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc38 metalc ? ? D DG 10 N7 ? ? ? 1_555 K NI . NI ? ? D DG 40 D NI 400 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc39 metalc ? ? K NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 400 D HOH 401 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc40 metalc ? ? K NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 400 D HOH 402 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc41 metalc ? ? K NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 400 D HOH 403 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc42 metalc ? ? K NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 400 D HOH 404 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc43 metalc ? ? K NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 400 D HOH 405 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc44 metalc ? ? L NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 500 D HOH 501 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc45 metalc ? ? L NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 500 D HOH 502 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc46 metalc ? ? L NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 500 D HOH 503 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc47 metalc ? ? L NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 500 D HOH 504 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc48 metalc ? ? L NI . NI ? ? ? 1_555 P HOH . O ? ? D NI 500 D HOH 505 1_555 ? ? ? ? ? ? ? 2.003 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 C DG 10 N3 ? ? A DG 2 C DG 30 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N3 ? ? ? 1_555 C DG 10 N2 ? ? A DG 2 C DG 30 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N2 ? ? ? 1_555 D DG 2 N3 ? ? B DG 20 D DG 32 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? B DG 10 N3 ? ? ? 1_555 D DG 2 N2 ? ? B DG 20 D DG 32 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 22 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 22 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 22 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 23 D DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 23 D DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 24 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 25 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 26 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 27 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 28 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 28 D DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 29 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 29 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 29 D DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 2 ? A DG 2 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 301 ? 1_555 109.0 ? 2 N7 ? A DG 2 ? A DG 2 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 302 ? 1_555 77.6 ? 3 O ? M HOH . ? A HOH 301 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 302 ? 1_555 170.8 ? 4 N7 ? A DG 2 ? A DG 2 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 303 ? 1_555 94.9 ? 5 O ? M HOH . ? A HOH 301 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 303 ? 1_555 86.3 ? 6 O ? M HOH . ? A HOH 302 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 303 ? 1_555 86.7 ? 7 N7 ? A DG 2 ? A DG 2 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 304 ? 1_555 91.2 ? 8 O ? M HOH . ? A HOH 301 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 304 ? 1_555 91.6 ? 9 O ? M HOH . ? A HOH 302 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 304 ? 1_555 94.7 ? 10 O ? M HOH . ? A HOH 303 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 304 ? 1_555 173.9 ? 11 N7 ? A DG 2 ? A DG 2 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 305 ? 1_555 164.4 ? 12 O ? M HOH . ? A HOH 301 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 305 ? 1_555 86.5 ? 13 O ? M HOH . ? A HOH 302 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 305 ? 1_555 86.9 ? 14 O ? M HOH . ? A HOH 303 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 305 ? 1_555 84.9 ? 15 O ? M HOH . ? A HOH 304 ? 1_555 NI ? F NI . ? A NI 300 ? 1_555 O ? M HOH . ? A HOH 305 ? 1_555 89.3 ? 16 N7 ? A DG 10 ? A DG 10 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 101 ? 1_555 91.6 ? 17 N7 ? A DG 10 ? A DG 10 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 102 ? 1_555 83.6 ? 18 O ? M HOH . ? A HOH 101 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 102 ? 1_555 173.9 ? 19 N7 ? A DG 10 ? A DG 10 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 103 ? 1_555 93.3 ? 20 O ? M HOH . ? A HOH 101 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 103 ? 1_555 95.8 ? 21 O ? M HOH . ? A HOH 102 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 103 ? 1_555 88.2 ? 22 N7 ? A DG 10 ? A DG 10 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 104 ? 1_555 84.5 ? 23 O ? M HOH . ? A HOH 101 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 104 ? 1_555 89.2 ? 24 O ? M HOH . ? A HOH 102 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 104 ? 1_555 86.6 ? 25 O ? M HOH . ? A HOH 103 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 O ? M HOH . ? A HOH 104 ? 1_555 174.6 ? 26 N7 ? A DG 10 ? A DG 10 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 N7 ? C DG 10 ? C DG 30 ? 3_545 167.0 ? 27 O ? M HOH . ? A HOH 101 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 N7 ? C DG 10 ? C DG 30 ? 3_545 97.5 ? 28 O ? M HOH . ? A HOH 102 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 N7 ? C DG 10 ? C DG 30 ? 3_545 86.6 ? 29 O ? M HOH . ? A HOH 103 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 N7 ? C DG 10 ? C DG 30 ? 3_545 94.9 ? 30 O ? M HOH . ? A HOH 104 ? 1_555 NI ? E NI . ? A NI 100 ? 1_555 N7 ? C DG 10 ? C DG 30 ? 3_545 86.4 ? 31 O ? M HOH . ? A HOH 701 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 702 ? 1_555 172.3 ? 32 O ? M HOH . ? A HOH 701 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 703 ? 1_555 91.8 ? 33 O ? M HOH . ? A HOH 702 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 703 ? 1_555 91.5 ? 34 O ? M HOH . ? A HOH 701 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 704 ? 1_555 88.4 ? 35 O ? M HOH . ? A HOH 702 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 704 ? 1_555 87.4 ? 36 O ? M HOH . ? A HOH 703 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 704 ? 1_555 172.9 ? 37 O ? M HOH . ? A HOH 701 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 705 ? 1_555 85.6 ? 38 O ? M HOH . ? A HOH 702 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 705 ? 1_555 87.6 ? 39 O ? M HOH . ? A HOH 703 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 705 ? 1_555 87.8 ? 40 O ? M HOH . ? A HOH 704 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 705 ? 1_555 85.1 ? 41 O ? M HOH . ? A HOH 701 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 706 ? 1_555 93.6 ? 42 O ? M HOH . ? A HOH 702 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 706 ? 1_555 92.9 ? 43 O ? M HOH . ? A HOH 703 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 706 ? 1_555 97.4 ? 44 O ? M HOH . ? A HOH 704 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 706 ? 1_555 89.6 ? 45 O ? M HOH . ? A HOH 705 ? 1_555 NI ? G NI . ? A NI 700 ? 1_555 O ? M HOH . ? A HOH 706 ? 1_555 174.7 ? 46 N7 ? B DG 2 ? B DG 12 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 601 ? 1_555 104.3 ? 47 N7 ? B DG 2 ? B DG 12 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 602 ? 1_555 84.2 ? 48 O ? N HOH . ? B HOH 601 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 602 ? 1_555 171.3 ? 49 N7 ? B DG 2 ? B DG 12 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 603 ? 1_555 93.1 ? 50 O ? N HOH . ? B HOH 601 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 603 ? 1_555 91.5 ? 51 O ? N HOH . ? B HOH 602 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 603 ? 1_555 89.7 ? 52 N7 ? B DG 2 ? B DG 12 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 604 ? 1_555 93.9 ? 53 O ? N HOH . ? B HOH 601 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 604 ? 1_555 90.3 ? 54 O ? N HOH . ? B HOH 602 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 604 ? 1_555 87.3 ? 55 O ? N HOH . ? B HOH 603 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 604 ? 1_555 172.1 ? 56 N7 ? B DG 2 ? B DG 12 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 605 ? 1_555 171.2 ? 57 O ? N HOH . ? B HOH 601 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 605 ? 1_555 84.6 ? 58 O ? N HOH . ? B HOH 602 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 605 ? 1_555 86.9 ? 59 O ? N HOH . ? B HOH 603 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 605 ? 1_555 86.8 ? 60 O ? N HOH . ? B HOH 604 ? 1_555 NI ? I NI . ? B NI 600 ? 1_555 O ? N HOH . ? B HOH 605 ? 1_555 85.7 ? 61 N7 ? B DG 10 ? B DG 20 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 201 ? 1_555 80.3 ? 62 N7 ? B DG 10 ? B DG 20 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 110.4 ? 63 O ? N HOH . ? B HOH 201 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 169.3 ? 64 N7 ? B DG 10 ? B DG 20 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 97.4 ? 65 O ? N HOH . ? B HOH 201 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 88.2 ? 66 O ? N HOH . ? B HOH 202 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 90.7 ? 67 N7 ? B DG 10 ? B DG 20 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 204 ? 1_555 89.7 ? 68 O ? N HOH . ? B HOH 201 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 204 ? 1_555 88.5 ? 69 O ? N HOH . ? B HOH 202 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 204 ? 1_555 91.1 ? 70 O ? N HOH . ? B HOH 203 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 204 ? 1_555 171.5 ? 71 N7 ? B DG 10 ? B DG 20 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 205 ? 1_555 164.4 ? 72 O ? N HOH . ? B HOH 201 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 205 ? 1_555 84.5 ? 73 O ? N HOH . ? B HOH 202 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 205 ? 1_555 84.8 ? 74 O ? N HOH . ? B HOH 203 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 205 ? 1_555 85.6 ? 75 O ? N HOH . ? B HOH 204 ? 1_555 NI ? H NI . ? B NI 200 ? 1_555 O ? N HOH . ? B HOH 205 ? 1_555 86.3 ? 76 N7 ? C DG 2 ? C DG 22 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 801 ? 1_555 87.9 ? 77 N7 ? C DG 2 ? C DG 22 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 802 ? 1_555 91.5 ? 78 O ? O HOH . ? C HOH 801 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 802 ? 1_555 178.0 ? 79 N7 ? C DG 2 ? C DG 22 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 803 ? 1_555 97.3 ? 80 O ? O HOH . ? C HOH 801 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 803 ? 1_555 93.5 ? 81 O ? O HOH . ? C HOH 802 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 803 ? 1_555 88.4 ? 82 N7 ? C DG 2 ? C DG 22 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 804 ? 1_555 81.5 ? 83 O ? O HOH . ? C HOH 801 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 804 ? 1_555 90.5 ? 84 O ? O HOH . ? C HOH 802 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 804 ? 1_555 87.5 ? 85 O ? O HOH . ? C HOH 803 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 804 ? 1_555 175.7 ? 86 N7 ? C DG 2 ? C DG 22 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 805 ? 1_555 171.4 ? 87 O ? O HOH . ? C HOH 801 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 805 ? 1_555 91.6 ? 88 O ? O HOH . ? C HOH 802 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 805 ? 1_555 88.7 ? 89 O ? O HOH . ? C HOH 803 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 805 ? 1_555 91.3 ? 90 O ? O HOH . ? C HOH 804 ? 1_555 NI ? J NI . ? C NI 800 ? 1_555 O ? O HOH . ? C HOH 805 ? 1_555 89.9 ? 91 N7 ? D DG 2 ? D DG 32 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 501 ? 1_555 86.3 ? 92 N7 ? D DG 2 ? D DG 32 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 502 ? 1_555 86.9 ? 93 O ? P HOH . ? D HOH 501 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 502 ? 1_555 173.1 ? 94 N7 ? D DG 2 ? D DG 32 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 503 ? 1_555 84.9 ? 95 O ? P HOH . ? D HOH 501 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 503 ? 1_555 93.0 ? 96 O ? P HOH . ? D HOH 502 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 503 ? 1_555 85.1 ? 97 N7 ? D DG 2 ? D DG 32 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 504 ? 1_555 90.0 ? 98 O ? P HOH . ? D HOH 501 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 504 ? 1_555 91.6 ? 99 O ? P HOH . ? D HOH 502 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 504 ? 1_555 89.7 ? 100 O ? P HOH . ? D HOH 503 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 504 ? 1_555 172.9 ? 101 N7 ? D DG 2 ? D DG 32 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 505 ? 1_555 176.4 ? 102 O ? P HOH . ? D HOH 501 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 505 ? 1_555 96.8 ? 103 O ? P HOH . ? D HOH 502 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 505 ? 1_555 89.9 ? 104 O ? P HOH . ? D HOH 503 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 505 ? 1_555 93.2 ? 105 O ? P HOH . ? D HOH 504 ? 1_555 NI ? L NI . ? D NI 500 ? 1_555 O ? P HOH . ? D HOH 505 ? 1_555 91.7 ? 106 N7 ? D DG 10 ? D DG 40 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 401 ? 1_555 71.4 ? 107 N7 ? D DG 10 ? D DG 40 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 402 ? 1_555 116.1 ? 108 O ? P HOH . ? D HOH 401 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 402 ? 1_555 172.4 ? 109 N7 ? D DG 10 ? D DG 40 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 403 ? 1_555 84.1 ? 110 O ? P HOH . ? D HOH 401 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 403 ? 1_555 93.0 ? 111 O ? P HOH . ? D HOH 402 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 403 ? 1_555 87.1 ? 112 N7 ? D DG 10 ? D DG 40 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 404 ? 1_555 103.7 ? 113 O ? P HOH . ? D HOH 401 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 404 ? 1_555 92.5 ? 114 O ? P HOH . ? D HOH 402 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 404 ? 1_555 86.6 ? 115 O ? P HOH . ? D HOH 403 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 404 ? 1_555 171.6 ? 116 N7 ? D DG 10 ? D DG 40 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 405 ? 1_555 156.7 ? 117 O ? P HOH . ? D HOH 401 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 405 ? 1_555 87.3 ? 118 O ? P HOH . ? D HOH 402 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 405 ? 1_555 85.1 ? 119 O ? P HOH . ? D HOH 403 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 405 ? 1_555 87.6 ? 120 O ? P HOH . ? D HOH 404 ? 1_555 NI ? K NI . ? D NI 400 ? 1_555 O ? P HOH . ? D HOH 405 ? 1_555 86.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 100 ? 6 'BINDING SITE FOR RESIDUE NI A 100' AC2 Software B NI 200 ? 6 'BINDING SITE FOR RESIDUE NI B 200' AC3 Software A NI 300 ? 6 'BINDING SITE FOR RESIDUE NI A 300' AC4 Software D NI 400 ? 6 'BINDING SITE FOR RESIDUE NI D 400' AC5 Software D NI 500 ? 6 'BINDING SITE FOR RESIDUE NI D 500' AC6 Software B NI 600 ? 6 'BINDING SITE FOR RESIDUE NI B 600' AC7 Software A NI 700 ? 6 'BINDING SITE FOR RESIDUE NI A 700' AC8 Software C NI 800 ? 6 'BINDING SITE FOR RESIDUE NI C 800' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 10 ? DG A 10 . ? 1_555 ? 2 AC1 6 HOH M . ? HOH A 101 . ? 1_555 ? 3 AC1 6 HOH M . ? HOH A 102 . ? 1_555 ? 4 AC1 6 HOH M . ? HOH A 103 . ? 1_555 ? 5 AC1 6 HOH M . ? HOH A 104 . ? 1_555 ? 6 AC1 6 DG C 10 ? DG C 30 . ? 3_545 ? 7 AC2 6 DG B 10 ? DG B 20 . ? 1_555 ? 8 AC2 6 HOH N . ? HOH B 201 . ? 1_555 ? 9 AC2 6 HOH N . ? HOH B 202 . ? 1_555 ? 10 AC2 6 HOH N . ? HOH B 203 . ? 1_555 ? 11 AC2 6 HOH N . ? HOH B 204 . ? 1_555 ? 12 AC2 6 HOH N . ? HOH B 205 . ? 1_555 ? 13 AC3 6 DG A 2 ? DG A 2 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH A 301 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH A 302 . ? 1_555 ? 16 AC3 6 HOH M . ? HOH A 303 . ? 1_555 ? 17 AC3 6 HOH M . ? HOH A 304 . ? 1_555 ? 18 AC3 6 HOH M . ? HOH A 305 . ? 1_555 ? 19 AC4 6 DG D 10 ? DG D 40 . ? 1_555 ? 20 AC4 6 HOH P . ? HOH D 401 . ? 1_555 ? 21 AC4 6 HOH P . ? HOH D 402 . ? 1_555 ? 22 AC4 6 HOH P . ? HOH D 403 . ? 1_555 ? 23 AC4 6 HOH P . ? HOH D 404 . ? 1_555 ? 24 AC4 6 HOH P . ? HOH D 405 . ? 1_555 ? 25 AC5 6 DG D 2 ? DG D 32 . ? 1_555 ? 26 AC5 6 HOH P . ? HOH D 501 . ? 1_555 ? 27 AC5 6 HOH P . ? HOH D 502 . ? 1_555 ? 28 AC5 6 HOH P . ? HOH D 503 . ? 1_555 ? 29 AC5 6 HOH P . ? HOH D 504 . ? 1_555 ? 30 AC5 6 HOH P . ? HOH D 505 . ? 1_555 ? 31 AC6 6 DG B 2 ? DG B 12 . ? 1_555 ? 32 AC6 6 HOH N . ? HOH B 601 . ? 1_555 ? 33 AC6 6 HOH N . ? HOH B 602 . ? 1_555 ? 34 AC6 6 HOH N . ? HOH B 603 . ? 1_555 ? 35 AC6 6 HOH N . ? HOH B 604 . ? 1_555 ? 36 AC6 6 HOH N . ? HOH B 605 . ? 1_555 ? 37 AC7 6 HOH M . ? HOH A 701 . ? 1_555 ? 38 AC7 6 HOH M . ? HOH A 702 . ? 1_555 ? 39 AC7 6 HOH M . ? HOH A 703 . ? 1_555 ? 40 AC7 6 HOH M . ? HOH A 704 . ? 1_555 ? 41 AC7 6 HOH M . ? HOH A 705 . ? 1_555 ? 42 AC7 6 HOH M . ? HOH A 706 . ? 1_555 ? 43 AC8 6 DG C 2 ? DG C 22 . ? 1_555 ? 44 AC8 6 HOH O . ? HOH C 801 . ? 1_555 ? 45 AC8 6 HOH O . ? HOH C 802 . ? 1_555 ? 46 AC8 6 HOH O . ? HOH C 803 . ? 1_555 ? 47 AC8 6 HOH O . ? HOH C 804 . ? 1_555 ? 48 AC8 6 HOH O . ? HOH C 805 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NI NI NI N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1G3V 'double helix' 1G3V 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 A DC 9 1_555 -0.390 -0.210 0.036 -5.786 6.016 2.623 1 B_DG12:DC9_A B 12 ? A 9 ? 19 1 1 B DT 3 1_555 A DA 8 1_555 -0.195 -0.155 -0.113 4.390 6.055 -5.902 2 B_DT13:DA8_A B 13 ? A 8 ? 20 1 1 B DG 4 1_555 A DC 7 1_555 -0.049 -0.200 0.020 2.509 -4.978 -2.049 3 B_DG14:DC7_A B 14 ? A 7 ? 19 1 1 B DT 5 1_555 A DA 6 1_555 -0.011 -0.217 0.059 -3.122 -7.474 3.489 4 B_DT15:DA6_A B 15 ? A 6 ? 20 1 1 B DA 6 1_555 A DT 5 1_555 0.160 -0.134 -0.162 -8.570 1.803 -4.394 5 B_DA16:DT5_A B 16 ? A 5 ? 20 1 1 B DC 7 1_555 A DG 4 1_555 0.571 -0.056 -0.026 1.576 4.498 2.832 6 B_DC17:DG4_A B 17 ? A 4 ? 19 1 1 B DA 8 1_555 A DT 3 1_555 -0.332 -0.304 0.013 0.968 -0.898 0.561 7 B_DA18:DT3_A B 18 ? A 3 ? 20 1 1 B DC 9 1_555 A DG 2 1_555 0.242 -0.148 -0.190 10.313 1.991 1.074 8 B_DC19:DG2_A B 19 ? A 2 ? 19 1 1 D DG 2 1_555 C DC 9 1_555 -0.251 -0.273 -0.373 -7.266 7.842 1.882 9 D_DG32:DC29_C D 32 ? C 29 ? 19 1 1 D DT 3 1_555 C DA 8 1_555 -0.133 -0.120 -0.323 9.765 2.630 -1.611 10 D_DT33:DA28_C D 33 ? C 28 ? 20 1 1 D DG 4 1_555 C DC 7 1_555 -0.036 -0.114 0.027 -3.997 -7.894 -1.600 11 D_DG34:DC27_C D 34 ? C 27 ? 19 1 1 D DT 5 1_555 C DA 6 1_555 0.021 -0.084 0.065 2.870 1.177 -2.228 12 D_DT35:DA26_C D 35 ? C 26 ? 20 1 1 D DA 6 1_555 C DT 5 1_555 0.108 -0.159 -0.175 -5.261 -1.485 -1.138 13 D_DA36:DT25_C D 36 ? C 25 ? 20 1 1 D DC 7 1_555 C DG 4 1_555 0.325 -0.032 0.027 6.847 -4.381 2.796 14 D_DC37:DG24_C D 37 ? C 24 ? 19 1 1 D DA 8 1_555 C DT 3 1_555 -0.071 -0.242 0.386 -0.082 3.635 -1.462 15 D_DA38:DT23_C D 38 ? C 23 ? 20 1 1 D DC 9 1_555 C DG 2 1_555 0.409 -0.186 -0.207 8.952 1.511 -2.230 16 D_DC39:DG22_C D 39 ? C 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 A DC 9 1_555 B DT 3 1_555 A DA 8 1_555 -0.599 -0.438 3.071 -1.595 3.898 25.366 -2.010 0.927 3.002 8.800 3.601 25.708 1 BB_DG12DT13:DA8DC9_AA B 12 ? A 9 ? B 13 ? A 8 ? 1 B DT 3 1_555 A DA 8 1_555 B DG 4 1_555 A DC 7 1_555 0.100 0.047 3.387 -1.990 1.615 41.126 -0.114 -0.365 3.378 2.297 2.830 41.202 2 BB_DT13DG14:DC7DA8_AA B 13 ? A 8 ? B 14 ? A 7 ? 1 B DG 4 1_555 A DC 7 1_555 B DT 5 1_555 A DA 6 1_555 -0.145 -0.489 3.470 0.902 0.917 28.760 -1.201 0.506 3.447 1.844 -1.815 28.788 3 BB_DG14DT15:DA6DC7_AA B 14 ? A 7 ? B 15 ? A 6 ? 1 B DT 5 1_555 A DA 6 1_555 B DA 6 1_555 A DT 5 1_555 -0.264 0.983 3.524 -1.049 -3.780 45.744 1.609 0.242 3.442 -4.852 1.346 45.903 4 BB_DT15DA16:DT5DA6_AA B 15 ? A 6 ? B 16 ? A 5 ? 1 B DA 6 1_555 A DT 5 1_555 B DC 7 1_555 A DG 4 1_555 0.248 -0.208 3.095 -0.683 3.126 29.723 -1.015 -0.614 3.052 6.071 1.326 29.891 5 BB_DA16DC17:DG4DT5_AA B 16 ? A 5 ? B 17 ? A 4 ? 1 B DC 7 1_555 A DG 4 1_555 B DA 8 1_555 A DT 3 1_555 0.127 1.618 3.382 1.783 -4.699 41.943 2.731 0.008 3.193 -6.536 -2.481 42.230 6 BB_DC17DA18:DT3DG4_AA B 17 ? A 4 ? B 18 ? A 3 ? 1 B DA 8 1_555 A DT 3 1_555 B DC 9 1_555 A DG 2 1_555 0.124 0.017 3.014 1.907 8.872 27.060 -1.839 0.152 2.876 18.317 -3.937 28.514 7 BB_DA18DC19:DG2DT3_AA B 18 ? A 3 ? B 19 ? A 2 ? 1 B DC 9 1_555 A DG 2 1_555 D DG 2 1_555 C DC 9 1_555 -0.075 2.636 3.718 3.463 2.176 -57.499 -2.866 0.132 3.623 -2.259 3.594 -57.632 8 BD_DC19DG32:DC29DG2_CA B 19 ? A 2 ? D 32 ? C 29 ? 1 D DG 2 1_555 C DC 9 1_555 D DT 3 1_555 C DA 8 1_555 -0.424 -0.042 2.898 -0.602 1.246 26.550 -0.383 0.781 2.902 2.710 1.309 26.586 9 DD_DG32DT33:DA28DC29_CC D 32 ? C 29 ? D 33 ? C 28 ? 1 D DT 3 1_555 C DA 8 1_555 D DG 4 1_555 C DC 7 1_555 -0.039 -0.159 3.667 -1.471 6.804 40.536 -1.052 -0.123 3.594 9.734 2.105 41.105 10 DD_DT33DG34:DC27DA28_CC D 33 ? C 28 ? D 34 ? C 27 ? 1 D DG 4 1_555 C DC 7 1_555 D DT 5 1_555 C DA 6 1_555 0.309 -0.605 3.125 -0.729 -0.018 27.951 -1.249 -0.804 3.117 -0.038 1.510 27.961 11 DD_DG34DT35:DA26DC27_CC D 34 ? C 27 ? D 35 ? C 26 ? 1 D DT 5 1_555 C DA 6 1_555 D DA 6 1_555 C DT 5 1_555 0.062 0.230 3.559 2.622 2.375 43.791 0.062 0.188 3.564 3.179 -3.509 43.927 12 DD_DT35DA36:DT25DA26_CC D 35 ? C 26 ? D 36 ? C 25 ? 1 D DA 6 1_555 C DT 5 1_555 D DC 7 1_555 C DG 4 1_555 0.062 -0.355 3.006 -3.199 -1.636 31.860 -0.371 -0.643 3.000 -2.968 5.804 32.057 13 DD_DA36DC37:DG24DT25_CC D 36 ? C 25 ? D 37 ? C 24 ? 1 D DC 7 1_555 C DG 4 1_555 D DA 8 1_555 C DT 3 1_555 -0.494 -0.301 3.339 -3.544 1.847 37.173 -0.719 0.291 3.352 2.888 5.540 37.380 14 DD_DC37DA38:DT23DG24_CC D 37 ? C 24 ? D 38 ? C 23 ? 1 D DA 8 1_555 C DT 3 1_555 D DC 9 1_555 C DG 2 1_555 0.169 -0.173 3.194 6.244 2.759 28.092 -0.947 1.022 3.127 5.581 -12.629 28.894 15 DD_DA38DC39:DG22DT23_CC D 38 ? C 23 ? D 39 ? C 22 ? # _atom_sites.entry_id 1G3V _atom_sites.fract_transf_matrix[1][1] 0.018857 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018857 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010226 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P # loop_