HEADER TRANSFERASE 27-OCT-00 1G4S TITLE THIAMIN PHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMIN PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: COMPLEXED WITH THIAMIN PHOSPHATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: THIC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SG13009 WITH PREP4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PYZC6927 KEYWDS THIAMIN BIOSYNTHESIS, TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.PEAPUS,H.-J.CHIU,N.CAMPOBASSO,J.J.REDDICK,T.P.BEGLEY,S.E.EALICK REVDAT 5 09-AUG-23 1G4S 1 REMARK REVDAT 4 27-OCT-21 1G4S 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1G4S 1 VERSN REVDAT 2 01-APR-03 1G4S 1 JRNL REVDAT 1 26-SEP-01 1G4S 0 JRNL AUTH D.H.PEAPUS,H.J.CHIU,N.CAMPOBASSO,J.J.REDDICK,T.P.BEGLEY, JRNL AUTH 2 S.E.EALICK JRNL TITL STRUCTURAL CHARACTERIZATION OF THE ENZYME-SUBSTRATE, JRNL TITL 2 ENZYME-INTERMEDIATE, AND ENZYME-PRODUCT COMPLEXES OF THIAMIN JRNL TITL 3 PHOSPHATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 40 10103 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11513589 JRNL DOI 10.1021/BI0104726 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.-J.CHIU,J.J.REDDICK,T.P.BEGLEY,S.E.EALICK REMARK 1 TITL CRYSTAL STRUCTURE OF THIAMIN PHOSPHATE SYNTHASE FROM REMARK 1 TITL 2 BACILLUS SUBTILIS AT 1.25A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 38 6460 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI982903Z REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.ZHANG,S.V.TAYLOR,H.-J.CHIU,T.P.BEGLEY REMARK 1 TITL CHARACTERIZATION OF THE BACILLUS SUBTILIS THIC OPERON REMARK 1 TITL 2 INVOLVED IN THIAMINE BIOSYNTHESIS REMARK 1 REF J.BACTERIOL. V. 179 3030 1997 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD FUNCTION REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 624933.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 43410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6474 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 328 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.03 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 31.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : C4.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : C4.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.921 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1G4E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75MM TRIS-HCL, 75 MM MGCL2, 21-22% REMARK 280 PEG4000, PH 7.5, HANGING DROP VAPOR DIFFUSION WITH MICRO SEEDING, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.92500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.49500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.88750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.96250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.88750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.96250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3206 O HOH A 3206 8665 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 -8.53 75.20 REMARK 500 ASP A 93 -56.93 67.34 REMARK 500 ASP A 94 90.14 -67.97 REMARK 500 ASP A 112 -161.48 -100.68 REMARK 500 LYS A 160 -95.08 -49.03 REMARK 500 ILE A 208 -77.96 -116.78 REMARK 500 ASP B1093 -57.96 62.77 REMARK 500 LYS B1160 -80.82 -51.19 REMARK 500 ILE B1208 -76.63 -118.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 112 OD2 77.4 REMARK 620 3 POP A2003 O2 165.7 92.1 REMARK 620 4 POP A2003 O5 101.4 177.7 88.7 REMARK 620 5 HOH A2101 O 74.2 91.5 96.6 86.2 REMARK 620 6 HOH A2102 O 94.2 87.4 95.0 94.6 168.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2006 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1093 OD1 REMARK 620 2 ASP B1112 OD2 78.0 REMARK 620 3 POP B2004 O2 165.0 89.7 REMARK 620 4 POP B2004 O5 97.8 175.4 94.2 REMARK 620 5 HOH B2202 O 92.3 85.5 95.2 96.7 REMARK 620 6 HOH B3032 O 75.0 86.5 95.9 90.6 166.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPS A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPS B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 2004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TPS RELATED DB: PDB REMARK 900 THIAMIN PHOSPHATE SYNTHASE REMARK 900 RELATED ID: 1G4E RELATED DB: PDB REMARK 900 RELATED ID: 1G4P RELATED DB: PDB REMARK 900 RELATED ID: 1G4T RELATED DB: PDB REMARK 900 RELATED ID: 1G6C RELATED DB: PDB REMARK 900 RELATED ID: 1G67 RELATED DB: PDB REMARK 900 RELATED ID: 1G69 RELATED DB: PDB DBREF 1G4S A 14 235 UNP P39594 THIE_BACSU 1 222 DBREF 1G4S B 1014 1235 UNP P39594 THIE_BACSU 1 222 SEQADV 1G4S HIS A 10 UNP P39594 CLONING ARTIFACT SEQADV 1G4S GLY A 11 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ILE A 12 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ARG A 13 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ALA A 130 UNP P39594 SER 117 ENGINEERED MUTATION SEQADV 1G4S HIS B 1010 UNP P39594 CLONING ARTIFACT SEQADV 1G4S GLY B 1011 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ILE B 1012 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ARG B 1013 UNP P39594 CLONING ARTIFACT SEQADV 1G4S ALA B 1130 UNP P39594 SER 117 ENGINEERED MUTATION SEQRES 1 A 226 HIS GLY ILE ARG MET THR ARG ILE SER ARG GLU MET MET SEQRES 2 A 226 LYS GLU LEU LEU SER VAL TYR PHE ILE MET GLY SER ASN SEQRES 3 A 226 ASN THR LYS ALA ASP PRO VAL THR VAL VAL GLN LYS ALA SEQRES 4 A 226 LEU LYS GLY GLY ALA THR LEU TYR GLN PHE ARG GLU LYS SEQRES 5 A 226 GLY GLY ASP ALA LEU THR GLY GLU ALA ARG ILE LYS PHE SEQRES 6 A 226 ALA GLU LYS ALA GLN ALA ALA CYS ARG GLU ALA GLY VAL SEQRES 7 A 226 PRO PHE ILE VAL ASN ASP ASP VAL GLU LEU ALA LEU ASN SEQRES 8 A 226 LEU LYS ALA ASP GLY ILE HIS ILE GLY GLN GLU ASP ALA SEQRES 9 A 226 ASN ALA LYS GLU VAL ARG ALA ALA ILE GLY ASP MET ILE SEQRES 10 A 226 LEU GLY VAL ALA ALA HIS THR MET SER GLU VAL LYS GLN SEQRES 11 A 226 ALA GLU GLU ASP GLY ALA ASP TYR VAL GLY LEU GLY PRO SEQRES 12 A 226 ILE TYR PRO THR GLU THR LYS LYS ASP THR ARG ALA VAL SEQRES 13 A 226 GLN GLY VAL SER LEU ILE GLU ALA VAL ARG ARG GLN GLY SEQRES 14 A 226 ILE SER ILE PRO ILE VAL GLY ILE GLY GLY ILE THR ILE SEQRES 15 A 226 ASP ASN ALA ALA PRO VAL ILE GLN ALA GLY ALA ASP GLY SEQRES 16 A 226 VAL SER MET ILE SER ALA ILE SER GLN ALA GLU ASP PRO SEQRES 17 A 226 GLU SER ALA ALA ARG LYS PHE ARG GLU GLU ILE GLN THR SEQRES 18 A 226 TYR LYS THR GLY ARG SEQRES 1 B 226 HIS GLY ILE ARG MET THR ARG ILE SER ARG GLU MET MET SEQRES 2 B 226 LYS GLU LEU LEU SER VAL TYR PHE ILE MET GLY SER ASN SEQRES 3 B 226 ASN THR LYS ALA ASP PRO VAL THR VAL VAL GLN LYS ALA SEQRES 4 B 226 LEU LYS GLY GLY ALA THR LEU TYR GLN PHE ARG GLU LYS SEQRES 5 B 226 GLY GLY ASP ALA LEU THR GLY GLU ALA ARG ILE LYS PHE SEQRES 6 B 226 ALA GLU LYS ALA GLN ALA ALA CYS ARG GLU ALA GLY VAL SEQRES 7 B 226 PRO PHE ILE VAL ASN ASP ASP VAL GLU LEU ALA LEU ASN SEQRES 8 B 226 LEU LYS ALA ASP GLY ILE HIS ILE GLY GLN GLU ASP ALA SEQRES 9 B 226 ASN ALA LYS GLU VAL ARG ALA ALA ILE GLY ASP MET ILE SEQRES 10 B 226 LEU GLY VAL ALA ALA HIS THR MET SER GLU VAL LYS GLN SEQRES 11 B 226 ALA GLU GLU ASP GLY ALA ASP TYR VAL GLY LEU GLY PRO SEQRES 12 B 226 ILE TYR PRO THR GLU THR LYS LYS ASP THR ARG ALA VAL SEQRES 13 B 226 GLN GLY VAL SER LEU ILE GLU ALA VAL ARG ARG GLN GLY SEQRES 14 B 226 ILE SER ILE PRO ILE VAL GLY ILE GLY GLY ILE THR ILE SEQRES 15 B 226 ASP ASN ALA ALA PRO VAL ILE GLN ALA GLY ALA ASP GLY SEQRES 16 B 226 VAL SER MET ILE SER ALA ILE SER GLN ALA GLU ASP PRO SEQRES 17 B 226 GLU SER ALA ALA ARG LYS PHE ARG GLU GLU ILE GLN THR SEQRES 18 B 226 TYR LYS THR GLY ARG HET MG A2005 1 HET TPS A2001 22 HET POP A2003 9 HET MG B2006 1 HET TPS B2002 22 HET POP B2004 9 HETNAM MG MAGNESIUM ION HETNAM TPS THIAMIN PHOSPHATE HETNAM POP PYROPHOSPHATE 2- FORMUL 3 MG 2(MG 2+) FORMUL 4 TPS 2(C12 H18 N4 O4 P S 1+) FORMUL 5 POP 2(H2 O7 P2 2-) FORMUL 9 HOH *298(H2 O) HELIX 1 1 SER A 18 LEU A 26 1 9 HELIX 2 2 GLY A 33 THR A 37 5 5 HELIX 3 3 ASP A 40 GLY A 52 1 13 HELIX 4 4 THR A 67 GLY A 86 1 20 HELIX 5 5 ASP A 94 LYS A 102 1 9 HELIX 6 6 ASN A 114 GLY A 123 1 10 HELIX 7 7 THR A 133 GLY A 144 1 12 HELIX 8 8 VAL A 168 GLN A 177 1 10 HELIX 9 9 ALA A 194 ALA A 200 1 7 HELIX 10 10 ILE A 208 GLN A 213 1 6 HELIX 11 11 ASP A 216 ARG A 235 1 20 HELIX 12 12 SER B 1018 LEU B 1026 1 9 HELIX 13 13 GLY B 1033 THR B 1037 5 5 HELIX 14 14 ASP B 1040 GLY B 1052 1 13 HELIX 15 15 THR B 1067 GLY B 1086 1 20 HELIX 16 16 ASP B 1094 LYS B 1102 1 9 HELIX 17 17 ASN B 1114 ILE B 1122 1 9 HELIX 18 18 THR B 1133 GLY B 1144 1 12 HELIX 19 19 VAL B 1168 GLN B 1177 1 10 HELIX 20 20 ALA B 1194 ALA B 1200 1 7 HELIX 21 21 ILE B 1208 GLN B 1213 1 6 HELIX 22 22 ASP B 1216 GLY B 1234 1 19 SHEET 1 A 9 VAL A 28 MET A 32 0 SHEET 2 A 9 LEU A 55 PHE A 58 1 O LEU A 55 N PHE A 30 SHEET 3 A 9 PHE A 89 ASN A 92 1 O ILE A 90 N PHE A 58 SHEET 4 A 9 GLY A 105 ILE A 108 1 O GLY A 105 N VAL A 91 SHEET 5 A 9 ILE A 126 ALA A 131 1 O ILE A 126 N ILE A 106 SHEET 6 A 9 TYR A 147 LEU A 150 1 O TYR A 147 N VAL A 129 SHEET 7 A 9 ILE A 183 ILE A 186 1 O VAL A 184 N LEU A 150 SHEET 8 A 9 VAL A 205 MET A 207 1 N SER A 206 O GLY A 185 SHEET 9 A 9 VAL A 28 MET A 32 1 N TYR A 29 O VAL A 205 SHEET 1 B 9 VAL B1028 MET B1032 0 SHEET 2 B 9 LEU B1055 PHE B1058 1 O LEU B1055 N PHE B1030 SHEET 3 B 9 PHE B1089 ASN B1092 1 O ILE B1090 N PHE B1058 SHEET 4 B 9 GLY B1105 ILE B1108 1 O GLY B1105 N VAL B1091 SHEET 5 B 9 ILE B1126 ALA B1131 1 O ILE B1126 N ILE B1106 SHEET 6 B 9 TYR B1147 LEU B1150 1 O TYR B1147 N VAL B1129 SHEET 7 B 9 ILE B1183 ILE B1186 1 N VAL B1184 O VAL B1148 SHEET 8 B 9 GLY B1204 MET B1207 1 O GLY B1204 N GLY B1185 SHEET 9 B 9 VAL B1028 MET B1032 1 N TYR B1029 O VAL B1205 LINK OD1 ASP A 93 MG MG A2005 1555 1555 2.28 LINK OD2 ASP A 112 MG MG A2005 1555 1555 2.18 LINK O2 POP A2003 MG MG A2005 1555 1555 2.02 LINK O5 POP A2003 MG MG A2005 1555 1555 2.10 LINK MG MG A2005 O HOH A2101 1555 1555 2.20 LINK MG MG A2005 O HOH A2102 1555 1555 2.09 LINK OD1 ASP B1093 MG MG B2006 1555 1555 2.14 LINK OD2 ASP B1112 MG MG B2006 1555 1555 2.27 LINK O2 POP B2004 MG MG B2006 1555 1555 2.00 LINK O5 POP B2004 MG MG B2006 1555 1555 2.01 LINK MG MG B2006 O HOH B2202 1555 1555 2.19 LINK MG MG B2006 O HOH B3032 1555 1555 2.22 CISPEP 1 GLY A 151 PRO A 152 0 0.13 CISPEP 2 GLY B 1151 PRO B 1152 0 0.05 SITE 1 AC1 5 ASP A 93 ASP A 112 POP A2003 HOH A2101 SITE 2 AC1 5 HOH A2102 SITE 1 AC2 5 ASP B1093 ASP B1112 POP B2004 HOH B2202 SITE 2 AC2 5 HOH B3032 SITE 1 AC3 15 ILE A 31 GLN A 57 ARG A 59 HIS A 107 SITE 2 AC3 15 THR A 156 THR A 158 ILE A 186 GLY A 188 SITE 3 AC3 15 MET A 207 ILE A 208 SER A 209 POP A2003 SITE 4 AC3 15 HOH A2301 HOH A2302 HOH A2305 SITE 1 AC4 18 TYR B1029 ILE B1031 GLN B1057 ARG B1059 SITE 2 AC4 18 ASN B1092 HIS B1107 THR B1156 THR B1158 SITE 3 AC4 18 LYS B1159 ILE B1186 GLY B1188 MET B1207 SITE 4 AC4 18 ILE B1208 SER B1209 POP B2004 HOH B2401 SITE 5 AC4 18 HOH B2402 HOH B2405 SITE 1 AC5 16 ARG A 59 LYS A 61 ASN A 92 ASP A 93 SITE 2 AC5 16 GLY A 109 ASP A 112 LYS A 159 TPS A2001 SITE 3 AC5 16 MG A2005 HOH A2101 HOH A2102 HOH A2103 SITE 4 AC5 16 HOH A2105 HOH A2107 HOH A2116 HOH A2117 SITE 1 AC6 15 ARG B1059 LYS B1061 ASN B1092 ASP B1093 SITE 2 AC6 15 GLY B1109 ASP B1112 LYS B1159 TPS B2002 SITE 3 AC6 15 MG B2006 HOH B2202 HOH B2203 HOH B2205 SITE 4 AC6 15 HOH B2207 HOH B2216 HOH B3032 CRYST1 76.990 76.990 139.850 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007151 0.00000