HEADER HYDROLASE 01-NOV-00 1G5F TITLE STRUCTURE OF LINB COMPLEXED WITH 1,2-DICHLOROETHANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-TCDN CHLOROHYDROLASE; COMPND 5 EC: 3.8.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 GENE: LINB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMLBH6 KEYWDS LINB HALOALKANE DEHALOGENASE HALOALKANES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY,Z.PROKOP,M.BOHAC,J.KMUNICEK,T.JEDLICKA,M.MONINCOVA,I.KUTA- AUTHOR 2 SMATANOVA,Y.NAGATA,J.DAMBORSKY,M.C.J.WILCE REVDAT 7 20-NOV-24 1G5F 1 REMARK REVDAT 6 09-AUG-23 1G5F 1 REMARK SEQADV LINK REVDAT 5 24-FEB-09 1G5F 1 VERSN REVDAT 4 01-APR-03 1G5F 1 JRNL REVDAT 3 26-JUN-02 1G5F 1 JRNL REVDAT 2 21-NOV-01 1G5F 1 JRNL AUTHOR REVDAT 1 01-NOV-01 1G5F 0 JRNL AUTH A.J.OAKLEY,Z.PROKOP,M.BOHAC,J.KMUNICEK,T.JEDLICKA, JRNL AUTH 2 M.MONINCOVA,I.KUTA-SMATANOVA,Y.NAGATA,J.DAMBORSKY,M.C.WILCE JRNL TITL EXPLORING THE STRUCTURE AND ACTIVITY OF HALOALKANE JRNL TITL 2 DEHALOGENASE FROM SPHINGOMONAS PAUCIMOBILIS UT26: EVIDENCE JRNL TITL 3 FOR PRODUCT- AND WATER-MEDIATED INHIBITION. JRNL REF BIOCHEMISTRY V. 41 4847 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11939779 JRNL DOI 10.1021/BI015734I REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.MAREK,J.VEVODOVA,I.K.SMATANOVA,Y.NAGATA,L.A.SVENSSON, REMARK 1 AUTH 2 J.NEWMAN,M.TAKAGI,J.DAMBORSKY REMARK 1 TITL CRYSTAL STRUCTURE OF THE HALOALKANE DEHALOGENASE FROM REMARK 1 TITL 2 SPHINGOMONAS PAUCIMOBILIS UT26 REMARK 1 REF BIOCHEMISTRY V. 39 14082 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI001539C REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1543157.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 23831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3608 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 194 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.13000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 2.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.46 REMARK 3 BSOL : 81.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DCE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DCE.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI MIRRORS REMARK 200 OPTICS : NI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 18-20% PEG REMARK 280 6000, 0.1 M TRIS BUFFER PH 8.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.43000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE PRODUCTIVE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 73 OD1 OD2 REMARK 480 GLU A 78 OE1 OE2 REMARK 480 GLU A 123 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL2 DCE A 601 O HOH A 866 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 50.64 -108.61 REMARK 500 THR A 40 -157.73 -99.81 REMARK 500 SER A 41 -169.22 -160.98 REMARK 500 ASP A 108 -131.41 48.30 REMARK 500 GLU A 132 62.68 36.28 REMARK 500 ARG A 155 35.26 -84.98 REMARK 500 ALA A 247 -77.56 -155.07 REMARK 500 ALA A 271 -92.25 -102.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 152 OE1 REMARK 620 2 HOH A 626 O 90.7 REMARK 620 3 HOH A 669 O 85.3 76.6 REMARK 620 4 HOH A 683 O 73.8 140.2 66.0 REMARK 620 5 HOH A 754 O 172.6 90.6 87.9 100.7 REMARK 620 6 HOH A 788 O 95.5 65.1 141.6 150.7 91.7 REMARK 620 7 HOH A 870 O 103.1 129.6 151.5 89.9 81.6 65.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 165 OE1 REMARK 620 2 ASP A 166 OD2 100.9 REMARK 620 3 ASP A 166 OD1 92.5 52.3 REMARK 620 4 PRO A 175 O 176.0 83.0 89.3 REMARK 620 5 ILE A 178 O 92.6 151.7 152.4 84.2 REMARK 620 6 HOH A 631 O 92.4 123.6 72.7 84.7 80.0 REMARK 620 7 HOH A 681 O 88.5 77.2 128.8 93.1 78.4 158.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 638 O REMARK 620 2 HOH A 638 O 120.0 REMARK 620 3 HOH A 665 O 73.5 146.5 REMARK 620 4 HOH A 665 O 144.6 72.5 115.8 REMARK 620 5 HOH A 709 O 69.2 69.2 139.8 88.0 REMARK 620 6 HOH A 709 O 70.1 69.5 89.9 139.6 91.1 REMARK 620 7 HOH A 838 O 131.8 77.9 71.7 81.7 147.1 77.5 REMARK 620 8 HOH A 838 O 77.7 129.4 81.9 70.5 76.2 147.7 127.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCE A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G42 RELATED DB: PDB REMARK 900 STRUCTURE OF 1,3,4,6-TETRACHLORO-1,4-CYCLOHEXADIENE HYDROLASE (LINB) REMARK 900 FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH 1,2-DICHLOROPROPANE REMARK 900 RELATED ID: 1G4H RELATED DB: PDB REMARK 900 LINB COMPLEXED WITH BUTAN-1-OL DBREF 1G5F A 1 296 UNP P51698 LINB_PSEPA 1 296 SEQADV 1G5F 2MR A 291 UNP P51698 ARG 291 MODIFIED RESIDUE SEQRES 1 A 296 MET SER LEU GLY ALA LYS PRO PHE GLY GLU LYS LYS PHE SEQRES 2 A 296 ILE GLU ILE LYS GLY ARG ARG MET ALA TYR ILE ASP GLU SEQRES 3 A 296 GLY THR GLY ASP PRO ILE LEU PHE GLN HIS GLY ASN PRO SEQRES 4 A 296 THR SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS CYS SEQRES 5 A 296 ALA GLY LEU GLY ARG LEU ILE ALA CYS ASP LEU ILE GLY SEQRES 6 A 296 MET GLY ASP SER ASP LYS LEU ASP PRO SER GLY PRO GLU SEQRES 7 A 296 ARG TYR ALA TYR ALA GLU HIS ARG ASP TYR LEU ASP ALA SEQRES 8 A 296 LEU TRP GLU ALA LEU ASP LEU GLY ASP ARG VAL VAL LEU SEQRES 9 A 296 VAL VAL HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP SEQRES 10 A 296 ALA ARG ARG HIS ARG GLU ARG VAL GLN GLY ILE ALA TYR SEQRES 11 A 296 MET GLU ALA ILE ALA MET PRO ILE GLU TRP ALA ASP PHE SEQRES 12 A 296 PRO GLU GLN ASP ARG ASP LEU PHE GLN ALA PHE ARG SER SEQRES 13 A 296 GLN ALA GLY GLU GLU LEU VAL LEU GLN ASP ASN VAL PHE SEQRES 14 A 296 VAL GLU GLN VAL LEU PRO GLY LEU ILE LEU ARG PRO LEU SEQRES 15 A 296 SER GLU ALA GLU MET ALA ALA TYR ARG GLU PRO PHE LEU SEQRES 16 A 296 ALA ALA GLY GLU ALA ARG ARG PRO THR LEU SER TRP PRO SEQRES 17 A 296 ARG GLN ILE PRO ILE ALA GLY THR PRO ALA ASP VAL VAL SEQRES 18 A 296 ALA ILE ALA ARG ASP TYR ALA GLY TRP LEU SER GLU SER SEQRES 19 A 296 PRO ILE PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA SEQRES 20 A 296 LEU THR THR GLY ARG MET ARG ASP PHE CYS ARG THR TRP SEQRES 21 A 296 PRO ASN GLN THR GLU ILE THR VAL ALA GLY ALA HIS PHE SEQRES 22 A 296 ILE GLN GLU ASP SER PRO ASP GLU ILE GLY ALA ALA ILE SEQRES 23 A 296 ALA ALA PHE VAL 2MR ARG LEU ARG PRO ALA MODRES 1G5F 2MR A 291 ARG N3, N4-DIMETHYLARGININE HET 2MR A 291 13 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CL A 504 1 HET DCE A 601 8 HETNAM 2MR N3, N4-DIMETHYLARGININE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM DCE 1,2-DICHLOROETHANE HETSYN DCE ETHYLENE DICHLORIDE FORMUL 1 2MR C8 H18 N4 O2 FORMUL 2 CA 3(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 DCE C2 H4 CL2 FORMUL 7 HOH *275(H2 O) HELIX 1 1 SER A 41 ARG A 46 5 6 HELIX 2 2 ILE A 48 ALA A 53 5 6 HELIX 3 3 ALA A 81 LEU A 96 1 16 HELIX 4 4 ASP A 108 HIS A 121 1 14 HELIX 5 5 GLU A 139 PHE A 143 5 5 HELIX 6 6 PRO A 144 ARG A 155 1 12 HELIX 7 7 ALA A 158 LEU A 164 1 7 HELIX 8 8 ASN A 167 GLN A 172 1 6 HELIX 9 9 GLN A 172 LEU A 177 1 6 HELIX 10 10 SER A 183 GLU A 192 1 10 HELIX 11 11 PRO A 193 LEU A 195 5 3 HELIX 12 12 GLY A 198 ARG A 201 5 4 HELIX 13 13 ARG A 202 TRP A 207 1 6 HELIX 14 14 PRO A 208 ILE A 211 5 4 HELIX 15 15 PRO A 217 SER A 232 1 16 HELIX 16 16 THR A 250 ARG A 258 1 9 HELIX 17 17 PHE A 273 ASP A 277 5 5 HELIX 18 18 SER A 278 VAL A 290 1 13 SHEET 1 A 8 LYS A 12 ILE A 16 0 SHEET 2 A 8 ARG A 19 GLU A 26 -1 O ARG A 19 N ILE A 16 SHEET 3 A 8 ARG A 57 CYS A 61 -1 N LEU A 58 O GLU A 26 SHEET 4 A 8 PRO A 31 GLN A 35 1 N ILE A 32 O ARG A 57 SHEET 5 A 8 VAL A 102 HIS A 107 1 O VAL A 103 N LEU A 33 SHEET 6 A 8 VAL A 125 MET A 131 1 N GLN A 126 O VAL A 102 SHEET 7 A 8 LYS A 238 PRO A 245 1 O LEU A 239 N TYR A 130 SHEET 8 A 8 GLN A 263 GLY A 270 1 O THR A 264 N PHE A 240 LINK C VAL A 290 N 2MR A 291 1555 1555 1.33 LINK C 2MR A 291 N ARG A 292 1555 1555 1.33 LINK OE1 GLN A 152 CA CA A 501 1555 1555 2.29 LINK OE1 GLN A 165 CA CA A 503 2565 1555 2.36 LINK OD2 ASP A 166 CA CA A 503 2565 1555 2.57 LINK OD1 ASP A 166 CA CA A 503 2565 1555 2.38 LINK O PRO A 175 CA CA A 503 1555 1555 2.33 LINK O ILE A 178 CA CA A 503 1555 1555 2.37 LINK CA CA A 501 O HOH A 626 1555 4456 2.47 LINK CA CA A 501 O HOH A 669 1555 4456 2.38 LINK CA CA A 501 O HOH A 683 1555 1555 2.20 LINK CA CA A 501 O HOH A 754 1555 4456 2.34 LINK CA CA A 501 O HOH A 788 1555 1555 2.46 LINK CA CA A 501 O HOH A 870 1555 1555 2.46 LINK CA CA A 502 O HOH A 638 1555 1555 2.60 LINK CA CA A 502 O HOH A 638 1555 2655 2.62 LINK CA CA A 502 O HOH A 665 1555 1555 2.53 LINK CA CA A 502 O HOH A 665 1555 2655 2.57 LINK CA CA A 502 O HOH A 709 1555 1555 2.56 LINK CA CA A 502 O HOH A 709 1555 2655 2.52 LINK CA CA A 502 O HOH A 838 1555 1555 2.53 LINK CA CA A 502 O HOH A 838 1555 2655 2.57 LINK CA CA A 503 O HOH A 631 1555 1555 2.41 LINK CA CA A 503 O HOH A 681 1555 2565 2.40 CISPEP 1 ASN A 38 PRO A 39 0 0.01 CISPEP 2 ASP A 73 PRO A 74 0 -0.16 CISPEP 3 THR A 216 PRO A 217 0 -0.24 CISPEP 4 GLU A 244 PRO A 245 0 0.47 SITE 1 AC1 8 ASP A 149 GLN A 152 HOH A 626 HOH A 669 SITE 2 AC1 8 HOH A 683 HOH A 754 HOH A 788 HOH A 870 SITE 1 AC2 4 HOH A 638 HOH A 665 HOH A 709 HOH A 838 SITE 1 AC3 6 GLN A 165 ASP A 166 PRO A 175 ILE A 178 SITE 2 AC3 6 HOH A 631 HOH A 681 SITE 1 AC4 5 ASN A 38 TRP A 109 PHE A 169 PRO A 208 SITE 2 AC4 5 HOH A 866 SITE 1 AC5 8 ASP A 108 PHE A 151 LEU A 177 ALA A 247 SITE 2 AC5 8 HIS A 272 HOH A 757 HOH A 866 HOH A 871 CRYST1 50.860 71.890 73.290 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013644 0.00000