data_1G6D
# 
_entry.id   1G6D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1G6D         pdb_00001g6d 10.2210/pdb1g6d/pdb 
NDB   UD0012       ?            ?                   
RCSB  RCSB012289   ?            ?                   
WWPDB D_1000012289 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2002-04-19 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2011-11-16 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Atomic model'              
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 5 'Structure model' chem_comp_atom         
2 5 'Structure model' chem_comp_bond         
3 5 'Structure model' database_2             
4 5 'Structure model' diffrn_source          
5 5 'Structure model' pdbx_struct_conn_angle 
6 5 'Structure model' struct_conn            
7 5 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  5 'Structure model' '_database_2.pdbx_DOI'                        
2  5 'Structure model' '_database_2.pdbx_database_accession'         
3  5 'Structure model' '_diffrn_source.pdbx_synchrotron_site'        
4  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
5  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
6  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
7  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
8  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
9  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'      
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'   
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'      
20 5 'Structure model' '_pdbx_struct_conn_angle.value'               
21 5 'Structure model' '_struct_conn.pdbx_dist_value'                
22 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
23 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
24 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
25 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
26 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
27 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
28 5 'Structure model' '_struct_conn.ptnr1_symmetry'                 
29 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
32 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
34 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
35 5 'Structure model' '_struct_conn.ptnr2_symmetry'                 
36 5 'Structure model' '_struct_site.pdbx_auth_asym_id'              
37 5 'Structure model' '_struct_site.pdbx_auth_comp_id'              
38 5 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1G6D 
_pdbx_database_status.recvd_initial_deposition_date   2000-11-04 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Soler-Lopez, M.' 1 
'Malinina, L.'    2 
'Tereshko, V.'    3 
'Zarytova, V.'    4 
'Subirana, J.A.'  5 
# 
_citation.id                        primary 
_citation.title                     'Interaction of zinc ions with d(CGCAATTGCG) in a 2.9 A resolution X-ray structure.' 
_citation.journal_abbrev            J.Biol.Inorg.Chem. 
_citation.journal_volume            7 
_citation.page_first                533 
_citation.page_last                 538 
_citation.year                      2002 
_citation.journal_id_ASTM           JJBCFA 
_citation.country                   GW 
_citation.journal_id_ISSN           0949-8257 
_citation.journal_id_CSD            2154 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   11941511 
_citation.pdbx_database_id_DOI      10.1007/s00775-001-0333-z 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Soler-Lopez, M.' 1 ? 
primary 'Malinina, L.'    2 ? 
primary 'Tereshko, V.'    3 ? 
primary 'Zarytova, V.'    4 ? 
primary 'Subirana, J.A.'  5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 'PEPTIDYL-D(CGCAATTGCG)' 3045.005 1  ? ? ? ? 
2 non-polymer syn 'ZINC ION'               65.409   3  ? ? ? ? 
3 water       nat water                    18.015   39 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DA)(DA)(DT)(DT)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCAATTGCG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'ZINC ION' ZN  
3 water      HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DA n 
1 5  DA n 
1 6  DT n 
1 7  DT n 
1 8  DG n 
1 9  DC n 
1 10 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'phosphotriester method in solution' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
ZN  non-polymer   . 'ZINC ION'                           ? 'Zn 2'            65.409  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DG 2  2  2  DG G A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DA 4  4  4  DA A A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DT 6  6  6  DT T A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DG 8  8  8  DG G A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DG 10 10 10 DG G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 ZN  1  11 11  ZN  ZN  A . 
C 2 ZN  1  12 12  ZN  ZN  A . 
D 2 ZN  1  13 13  ZN  ZN  A . 
E 3 HOH 1  14 12  HOH HOH A . 
E 3 HOH 2  15 13  HOH HOH A . 
E 3 HOH 3  16 14  HOH HOH A . 
E 3 HOH 4  17 15  HOH HOH A . 
E 3 HOH 5  18 16  HOH HOH A . 
E 3 HOH 6  19 17  HOH HOH A . 
E 3 HOH 7  20 18  HOH HOH A . 
E 3 HOH 8  21 19  HOH HOH A . 
E 3 HOH 9  22 20  HOH HOH A . 
E 3 HOH 10 23 21  HOH HOH A . 
E 3 HOH 11 24 114 HOH HOH A . 
E 3 HOH 12 25 115 HOH HOH A . 
E 3 HOH 13 26 116 HOH HOH A . 
E 3 HOH 14 27 117 HOH HOH A . 
E 3 HOH 15 28 118 HOH HOH A . 
E 3 HOH 16 29 119 HOH HOH A . 
E 3 HOH 17 30 120 HOH HOH A . 
E 3 HOH 18 31 121 HOH HOH A . 
E 3 HOH 19 32 122 HOH HOH A . 
E 3 HOH 20 33 123 HOH HOH A . 
E 3 HOH 21 34 124 HOH HOH A . 
E 3 HOH 22 35 125 HOH HOH A . 
E 3 HOH 23 36 126 HOH HOH A . 
E 3 HOH 24 37 127 HOH HOH A . 
E 3 HOH 25 38 128 HOH HOH A . 
E 3 HOH 26 39 129 HOH HOH A . 
E 3 HOH 27 40 130 HOH HOH A . 
E 3 HOH 28 41 131 HOH HOH A . 
E 3 HOH 29 42 132 HOH HOH A . 
E 3 HOH 30 43 133 HOH HOH A . 
E 3 HOH 31 44 134 HOH HOH A . 
E 3 HOH 32 45 135 HOH HOH A . 
E 3 HOH 33 46 136 HOH HOH A . 
E 3 HOH 34 47 137 HOH HOH A . 
E 3 HOH 35 48 138 HOH HOH A . 
E 3 HOH 36 49 139 HOH HOH A . 
E 3 HOH 37 50 140 HOH HOH A . 
E 3 HOH 38 51 141 HOH HOH A . 
E 3 HOH 39 52 142 HOH HOH A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
AMoRE     phasing          .     ? 1 
X-PLOR    refinement       3.843 ? 2 
DENZO     'data reduction' .     ? 3 
SCALEPACK 'data scaling'   .     ? 4 
# 
_cell.entry_id           1G6D 
_cell.length_a           27.92 
_cell.length_b           44.09 
_cell.length_c           53.22 
_cell.angle_alpha        90 
_cell.angle_beta         90 
_cell.angle_gamma        90 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1G6D 
_symmetry.space_group_name_H-M             'C 2 2 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                20 
# 
_exptl.entry_id          1G6D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.58 
_exptl_crystal.density_percent_sol   52.34 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7 
_exptl_crystal_grow.pdbx_details    
'0.5 mM adduct, 10mM sodium cacodylate, 0.75 mM Zn acetate, 10% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 adduct              ? ? ? 
1 2 1 'sodium cacodylate' ? ? ? 
1 3 1 'Zn acetate'        ? ? ? 
1 4 1 MPD                 ? ? ? 
1 5 2 MPD                 ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           110 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   1998-08-06 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.1 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'EMBL/DESY, HAMBURG BEAMLINE X11' 
_diffrn_source.pdbx_synchrotron_site       'EMBL/DESY, HAMBURG' 
_diffrn_source.pdbx_synchrotron_beamline   X11 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.1 
# 
_reflns.entry_id                     1G6D 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   2.0 
_reflns.d_resolution_low             20 
_reflns.d_resolution_high            2.9 
_reflns.number_obs                   830 
_reflns.number_all                   7251 
_reflns.percent_possible_obs         94.6 
_reflns.pdbx_Rmerge_I_obs            0.1100000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        10.4 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              2.664 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1G6D 
_refine.ls_number_reflns_obs                     770 
_refine.ls_number_reflns_all                     7251 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_d_res_low                             20 
_refine.ls_d_res_high                            2.9 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.2083000 
_refine.ls_R_factor_R_free                       0.2134000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  
;The sequence of the peptidyl-DNA is  CH3C0-RRRR-NH-(CH2)6-NH-p-d(CGCAATTGCG).  The peptidyl segment was disordered and not visible in the electron density.
;
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   206 
_refine_hist.pdbx_number_atoms_ligand         3 
_refine_hist.number_atoms_solvent             39 
_refine_hist.number_atoms_total               248 
_refine_hist.d_res_high                       2.9 
_refine_hist.d_res_low                        20 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d    0.00597 ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg 1.14044 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          1G6D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1G6D 
_struct.title                     'STRUCTURE OF PEPTIDYL-D(CGCAATTGCG) IN THE PRESENCE OF ZINC IONS' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1G6D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DNA, peptidyl-DNA complex, Zn ions' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 2 ? 
D N N 2 ? 
E N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1G6D 
_struct_ref.pdbx_db_accession          1G6D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              1G6D 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             1G6D 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z     1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  
0.0000000000 0.0000000000  0.0000000000 0.0000000000 1.0000000000  0.0000000000 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 
0.0000000000 44.0900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DC 1  OP1 ? ? ? 1_555 B ZN  . ZN ? ? A DC 1  A ZN  11 1_555 ? ? ? ? ? ? ?            2.188 ? ? 
metalc2  metalc ? ? A DC 1  OP1 ? ? ? 3_655 B ZN  . ZN ? ? A DC 1  A ZN  11 1_555 ? ? ? ? ? ? ?            2.184 ? ? 
metalc3  metalc ? ? A DG 2  N7  ? ? ? 1_555 D ZN  . ZN ? ? A DG 2  A ZN  13 1_555 ? ? ? ? ? ? ?            2.168 ? ? 
metalc4  metalc ? ? A DG 10 OP1 ? ? ? 6_565 B ZN  . ZN ? ? A DG 10 A ZN  11 1_555 ? ? ? ? ? ? ?            2.292 ? ? 
metalc5  metalc ? ? A DG 10 OP1 ? ? ? 8_565 B ZN  . ZN ? ? A DG 10 A ZN  11 1_555 ? ? ? ? ? ? ?            2.292 ? ? 
metalc6  metalc ? ? A DG 10 N7  ? ? ? 1_555 C ZN  . ZN ? ? A DG 10 A ZN  12 1_555 ? ? ? ? ? ? ?            2.191 ? ? 
metalc7  metalc ? ? B ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 11 A HOH 25 1_555 ? ? ? ? ? ? ?            2.103 ? ? 
metalc8  metalc ? ? B ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 11 A HOH 25 3_655 ? ? ? ? ? ? ?            2.100 ? ? 
metalc9  metalc ? ? C ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 12 A HOH 14 1_555 ? ? ? ? ? ? ?            2.102 ? ? 
metalc10 metalc ? ? C ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 12 A HOH 15 1_555 ? ? ? ? ? ? ?            2.098 ? ? 
metalc11 metalc ? ? C ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 12 A HOH 16 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
metalc12 metalc ? ? C ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 12 A HOH 17 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
metalc13 metalc ? ? C ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 12 A HOH 18 1_555 ? ? ? ? ? ? ?            2.097 ? ? 
metalc14 metalc ? ? D ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 13 A HOH 19 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
metalc15 metalc ? ? D ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 13 A HOH 20 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
metalc16 metalc ? ? D ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 13 A HOH 21 1_555 ? ? ? ? ? ? ?            2.102 ? ? 
metalc17 metalc ? ? D ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 13 A HOH 22 1_555 ? ? ? ? ? ? ?            2.098 ? ? 
metalc18 metalc ? ? D ZN .  ZN  ? ? ? 1_555 E HOH . O  ? ? A ZN 13 A HOH 23 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
hydrog1  hydrog ? ? A DG 2  N1  ? ? ? 1_555 A DC  9 N3 ? ? A DG 2  A DC  9  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DG 2  N2  ? ? ? 1_555 A DC  9 O2 ? ? A DG 2  A DC  9  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DG 2  O6  ? ? ? 1_555 A DC  9 N4 ? ? A DG 2  A DC  9  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DC 3  N3  ? ? ? 1_555 A DG  8 N1 ? ? A DC 3  A DG  8  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DC 3  N4  ? ? ? 1_555 A DG  8 O6 ? ? A DC 3  A DG  8  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DC 3  O2  ? ? ? 1_555 A DG  8 N2 ? ? A DC 3  A DG  8  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DA 4  N1  ? ? ? 1_555 A DT  7 N3 ? ? A DA 4  A DT  7  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DA 4  N6  ? ? ? 1_555 A DT  7 O4 ? ? A DA 4  A DT  7  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DA 5  N1  ? ? ? 1_555 A DT  6 N3 ? ? A DA 5  A DT  6  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DA 5  N6  ? ? ? 1_555 A DT  6 O4 ? ? A DA 5  A DT  6  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DT 6  N3  ? ? ? 1_555 A DA  5 N1 ? ? A DT 6  A DA  5  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DT 6  O4  ? ? ? 1_555 A DA  5 N6 ? ? A DT 6  A DA  5  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DT 7  N3  ? ? ? 1_555 A DA  4 N1 ? ? A DT 7  A DA  4  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DT 7  O4  ? ? ? 1_555 A DA  4 N6 ? ? A DT 7  A DA  4  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DG 8  N1  ? ? ? 1_555 A DC  3 N3 ? ? A DG 8  A DC  3  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DG 8  N2  ? ? ? 1_555 A DC  3 O2 ? ? A DG 8  A DC  3  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DG 8  O6  ? ? ? 1_555 A DC  3 N4 ? ? A DG 8  A DC  3  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DC 9  N3  ? ? ? 1_555 A DG  2 N1 ? ? A DC 9  A DG  2  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DC 9  N4  ? ? ? 1_555 A DG  2 O6 ? ? A DC 9  A DG  2  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DC 9  O2  ? ? ? 1_555 A DG  2 N2 ? ? A DC 9  A DG  2  4_565 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  OP1 ? A DC  1  ? A DC  1  ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DC  1  ? A DC  1  ? 3_655 121.4 ? 
2  OP1 ? A DC  1  ? A DC  1  ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DG  10 ? A DG  10 ? 6_565 127.9 ? 
3  OP1 ? A DC  1  ? A DC  1  ? 3_655 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DG  10 ? A DG  10 ? 6_565 98.3  ? 
4  OP1 ? A DC  1  ? A DC  1  ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DG  10 ? A DG  10 ? 8_565 98.2  ? 
5  OP1 ? A DC  1  ? A DC  1  ? 3_655 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DG  10 ? A DG  10 ? 8_565 128.1 ? 
6  OP1 ? A DG  10 ? A DG  10 ? 6_565 ZN ? B ZN . ? A ZN 11 ? 1_555 OP1 ? A DG  10 ? A DG  10 ? 8_565 78.3  ? 
7  OP1 ? A DC  1  ? A DC  1  ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 1_555 70.3  ? 
8  OP1 ? A DC  1  ? A DC  1  ? 3_655 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 1_555 109.1 ? 
9  OP1 ? A DG  10 ? A DG  10 ? 6_565 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 1_555 65.3  ? 
10 OP1 ? A DG  10 ? A DG  10 ? 8_565 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 1_555 115.6 ? 
11 OP1 ? A DC  1  ? A DC  1  ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 3_655 109.0 ? 
12 OP1 ? A DC  1  ? A DC  1  ? 3_655 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 3_655 70.5  ? 
13 OP1 ? A DG  10 ? A DG  10 ? 6_565 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 3_655 115.7 ? 
14 OP1 ? A DG  10 ? A DG  10 ? 8_565 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 3_655 65.3  ? 
15 O   ? E HOH .  ? A HOH 25 ? 1_555 ZN ? B ZN . ? A ZN 11 ? 1_555 O   ? E HOH .  ? A HOH 25 ? 3_655 178.9 ? 
16 N7  ? A DG  2  ? A DG  2  ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 19 ? 1_555 92.3  ? 
17 N7  ? A DG  2  ? A DG  2  ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 20 ? 1_555 87.8  ? 
18 O   ? E HOH .  ? A HOH 19 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 20 ? 1_555 179.9 ? 
19 N7  ? A DG  2  ? A DG  2  ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 21 ? 1_555 175.8 ? 
20 O   ? E HOH .  ? A HOH 19 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 21 ? 1_555 89.9  ? 
21 O   ? E HOH .  ? A HOH 20 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 21 ? 1_555 90.0  ? 
22 N7  ? A DG  2  ? A DG  2  ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 22 ? 1_555 93.5  ? 
23 O   ? E HOH .  ? A HOH 19 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 22 ? 1_555 90.0  ? 
24 O   ? E HOH .  ? A HOH 20 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 22 ? 1_555 90.0  ? 
25 O   ? E HOH .  ? A HOH 21 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 22 ? 1_555 90.0  ? 
26 N7  ? A DG  2  ? A DG  2  ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 23 ? 1_555 86.5  ? 
27 O   ? E HOH .  ? A HOH 19 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 23 ? 1_555 90.0  ? 
28 O   ? E HOH .  ? A HOH 20 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 23 ? 1_555 90.0  ? 
29 O   ? E HOH .  ? A HOH 21 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 23 ? 1_555 89.9  ? 
30 O   ? E HOH .  ? A HOH 22 ? 1_555 ZN ? D ZN . ? A ZN 13 ? 1_555 O   ? E HOH .  ? A HOH 23 ? 1_555 179.9 ? 
31 N7  ? A DG  10 ? A DG  10 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 14 ? 1_555 92.1  ? 
32 N7  ? A DG  10 ? A DG  10 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 15 ? 1_555 88.1  ? 
33 O   ? E HOH .  ? A HOH 14 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 15 ? 1_555 179.8 ? 
34 N7  ? A DG  10 ? A DG  10 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 16 ? 1_555 176.8 ? 
35 O   ? E HOH .  ? A HOH 14 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 16 ? 1_555 89.8  ? 
36 O   ? E HOH .  ? A HOH 15 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 16 ? 1_555 90.0  ? 
37 N7  ? A DG  10 ? A DG  10 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 17 ? 1_555 92.6  ? 
38 O   ? E HOH .  ? A HOH 14 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 17 ? 1_555 90.0  ? 
39 O   ? E HOH .  ? A HOH 15 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 17 ? 1_555 89.9  ? 
40 O   ? E HOH .  ? A HOH 16 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 17 ? 1_555 89.9  ? 
41 N7  ? A DG  10 ? A DG  10 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 18 ? 1_555 87.5  ? 
42 O   ? E HOH .  ? A HOH 14 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 18 ? 1_555 90.0  ? 
43 O   ? E HOH .  ? A HOH 15 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 18 ? 1_555 90.1  ? 
44 O   ? E HOH .  ? A HOH 16 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 18 ? 1_555 90.0  ? 
45 O   ? E HOH .  ? A HOH 17 ? 1_555 ZN ? C ZN . ? A ZN 12 ? 1_555 O   ? E HOH .  ? A HOH 18 ? 1_555 179.9 ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A ZN 11 ? 6 'BINDING SITE FOR RESIDUE ZN A 11' 
AC2 Software A ZN 12 ? 6 'BINDING SITE FOR RESIDUE ZN A 12' 
AC3 Software A ZN 13 ? 6 'BINDING SITE FOR RESIDUE ZN A 13' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 6 DC  A 1  ? DC  A 1  . ? 1_555 ? 
2  AC1 6 DC  A 1  ? DC  A 1  . ? 3_655 ? 
3  AC1 6 DG  A 10 ? DG  A 10 . ? 8_565 ? 
4  AC1 6 DG  A 10 ? DG  A 10 . ? 6_565 ? 
5  AC1 6 HOH E .  ? HOH A 25 . ? 3_655 ? 
6  AC1 6 HOH E .  ? HOH A 25 . ? 1_555 ? 
7  AC2 6 DG  A 10 ? DG  A 10 . ? 1_555 ? 
8  AC2 6 HOH E .  ? HOH A 14 . ? 1_555 ? 
9  AC2 6 HOH E .  ? HOH A 15 . ? 1_555 ? 
10 AC2 6 HOH E .  ? HOH A 16 . ? 1_555 ? 
11 AC2 6 HOH E .  ? HOH A 17 . ? 1_555 ? 
12 AC2 6 HOH E .  ? HOH A 18 . ? 1_555 ? 
13 AC3 6 DG  A 2  ? DG  A 2  . ? 1_555 ? 
14 AC3 6 HOH E .  ? HOH A 19 . ? 1_555 ? 
15 AC3 6 HOH E .  ? HOH A 20 . ? 1_555 ? 
16 AC3 6 HOH E .  ? HOH A 21 . ? 1_555 ? 
17 AC3 6 HOH E .  ? HOH A 22 . ? 1_555 ? 
18 AC3 6 HOH E .  ? HOH A 23 . ? 1_555 ? 
# 
_pdbx_validate_rmsd_bond.id                        1 
_pdbx_validate_rmsd_bond.PDB_model_num             1 
_pdbx_validate_rmsd_bond.auth_atom_id_1            P 
_pdbx_validate_rmsd_bond.auth_asym_id_1            A 
_pdbx_validate_rmsd_bond.auth_comp_id_1            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_1             1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1            ? 
_pdbx_validate_rmsd_bond.label_alt_id_1            ? 
_pdbx_validate_rmsd_bond.auth_atom_id_2            OP3 
_pdbx_validate_rmsd_bond.auth_asym_id_2            A 
_pdbx_validate_rmsd_bond.auth_comp_id_2            DC 
_pdbx_validate_rmsd_bond.auth_seq_id_2             1 
_pdbx_validate_rmsd_bond.PDB_ins_code_2            ? 
_pdbx_validate_rmsd_bond.label_alt_id_2            ? 
_pdbx_validate_rmsd_bond.bond_value                1.527 
_pdbx_validate_rmsd_bond.bond_target_value         1.607 
_pdbx_validate_rmsd_bond.bond_deviation            -0.080 
_pdbx_validate_rmsd_bond.bond_standard_deviation   0.012 
_pdbx_validate_rmsd_bond.linker_flag               N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DG A 2  ? ? 0.066 'SIDE CHAIN' 
2 1 DG A 10 ? ? 0.061 'SIDE CHAIN' 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 A ZN  11 ? B ZN  . 
2 1 A HOH 27 ? E HOH . 
3 1 A HOH 28 ? E HOH . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DT  OP3    O  N N 108 
DT  P      P  N N 109 
DT  OP1    O  N N 110 
DT  OP2    O  N N 111 
DT  "O5'"  O  N N 112 
DT  "C5'"  C  N N 113 
DT  "C4'"  C  N R 114 
DT  "O4'"  O  N N 115 
DT  "C3'"  C  N S 116 
DT  "O3'"  O  N N 117 
DT  "C2'"  C  N N 118 
DT  "C1'"  C  N R 119 
DT  N1     N  N N 120 
DT  C2     C  N N 121 
DT  O2     O  N N 122 
DT  N3     N  N N 123 
DT  C4     C  N N 124 
DT  O4     O  N N 125 
DT  C5     C  N N 126 
DT  C7     C  N N 127 
DT  C6     C  N N 128 
DT  HOP3   H  N N 129 
DT  HOP2   H  N N 130 
DT  "H5'"  H  N N 131 
DT  "H5''" H  N N 132 
DT  "H4'"  H  N N 133 
DT  "H3'"  H  N N 134 
DT  "HO3'" H  N N 135 
DT  "H2'"  H  N N 136 
DT  "H2''" H  N N 137 
DT  "H1'"  H  N N 138 
DT  H3     H  N N 139 
DT  H71    H  N N 140 
DT  H72    H  N N 141 
DT  H73    H  N N 142 
DT  H6     H  N N 143 
HOH O      O  N N 144 
HOH H1     H  N N 145 
HOH H2     H  N N 146 
ZN  ZN     ZN N N 147 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
# 
_ndb_struct_conf_na.entry_id   1G6D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG 2 1_555 A DC 9 4_565 -0.584 -0.397 0.853 0.258  -0.174  4.027  1 A_DG2:DC9_A A 2 ? A 9 ? 19 1 
1 A DC 3 1_555 A DG 8 4_565 0.526  -0.506 0.075 8.014  -0.075  -0.929 2 A_DC3:DG8_A A 3 ? A 8 ? 19 1 
1 A DA 4 1_555 A DT 7 4_565 -0.129 -0.158 0.246 7.898  -18.479 -0.709 3 A_DA4:DT7_A A 4 ? A 7 ? 20 1 
1 A DA 5 1_555 A DT 6 4_565 0.192  -0.156 0.121 5.621  -10.335 -2.840 4 A_DA5:DT6_A A 5 ? A 6 ? 20 1 
1 A DT 6 1_555 A DA 5 4_565 -0.192 -0.156 0.121 -5.621 -10.335 -2.840 5 A_DT6:DA5_A A 6 ? A 5 ? 20 1 
1 A DT 7 1_555 A DA 4 4_565 0.129  -0.158 0.246 -7.898 -18.479 -0.709 6 A_DT7:DA4_A A 7 ? A 4 ? 20 1 
1 A DG 8 1_555 A DC 3 4_565 -0.526 -0.506 0.075 -8.014 -0.075  -0.929 7 A_DG8:DC3_A A 8 ? A 3 ? 19 1 
1 A DC 9 1_555 A DG 2 4_565 0.584  -0.397 0.853 -0.258 -0.174  4.027  8 A_DC9:DG2_A A 9 ? A 2 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG 2 1_555 A DC 9 4_565 A DC 3 1_555 A DG 8 4_565 0.267  0.847  3.287 7.452  2.389  39.043 0.961  0.490  3.325 3.532  -11.016 
39.790 1 AA_DG2DC3:DG8DC9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DC 3 1_555 A DG 8 4_565 A DA 4 1_555 A DT 7 4_565 -0.550 0.373  3.232 -2.619 1.523  31.737 0.403  0.526  3.279 2.777  4.775   
31.877 2 AA_DC3DA4:DT7DG8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DA 4 1_555 A DT 7 4_565 A DA 5 1_555 A DT 6 4_565 -0.150 -0.004 3.462 0.247  -2.786 43.273 0.282  0.228  3.455 -3.773 -0.334  
43.359 3 AA_DA4DA5:DT6DT7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DA 5 1_555 A DT 6 4_565 A DT 6 1_555 A DA 5 4_565 0.000  -1.289 3.401 0.000  -1.907 29.635 -2.094 0.000  3.475 -3.723 0.000   
29.695 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DT 6 1_555 A DA 5 4_565 A DT 7 1_555 A DA 4 4_565 0.150  -0.004 3.462 -0.247 -2.786 43.273 0.282  -0.228 3.455 -3.773 0.334   
43.359 5 AA_DT6DT7:DA4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DT 7 1_555 A DA 4 4_565 A DG 8 1_555 A DC 3 4_565 0.550  0.373  3.232 2.619  1.523  31.737 0.403  -0.526 3.279 2.777  -4.775  
31.877 6 AA_DT7DG8:DC3DA4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DG 8 1_555 A DC 3 4_565 A DC 9 1_555 A DG 2 4_565 -0.267 0.847  3.287 -7.452 2.389  39.043 0.961  -0.490 3.325 3.532  11.016  
39.790 7 AA_DG8DC9:DG2DC3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
_atom_sites.entry_id                    1G6D 
_atom_sites.fract_transf_matrix[1][1]   0.035817 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.022681 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018790 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
N  
O  
P  
ZN 
# 
loop_