HEADER HORMONE/GROWTH FACTOR 16-NOV-00 1G82 TITLE STRUCTURE OF FIBROBLAST GROWTH FACTOR 9 CAVEAT 1G82 NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 NAG G 2 HAS WRONG CAVEAT 2 1G82 CHIRALITY AT ATOM C1 FUC G 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR 9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBACPAK9 KEYWDS FIBROBLAST GROWTH FACTOR, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.J.HECHT,R.ADAR,B.HOFMANN,O.BOGIN,H.WEICH,A.YAYON REVDAT 6 25-DEC-24 1G82 1 REMARK LINK ATOM REVDAT 5 09-AUG-23 1G82 1 HETSYN REVDAT 4 29-JUL-20 1G82 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 1G82 1 VERSN REVDAT 2 24-FEB-09 1G82 1 VERSN REVDAT 1 07-MAR-01 1G82 0 JRNL AUTH H.J.HECHT,R.ADAR,B.HOFMANN,O.BOGIN,H.WEICH,A.YAYON JRNL TITL STRUCTURE OF FIBROBLAST GROWTH FACTOR 9 SHOWS A SYMMETRIC JRNL TITL 2 DIMER WITH UNIQUE RECEPTOR- AND HEPARIN-BINDING INTERFACES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 378 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11223514 JRNL DOI 10.1107/S0907444900020813 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2058 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 188 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.034 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.389 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.558 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.728 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.009 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : 0.22200 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2AFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, MES, TRIS, PH 5.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.97350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 75.97350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.61500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 75.97350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.30750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 75.97350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.92250 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.97350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.97350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.61500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 75.97350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 87.92250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 75.97350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.30750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. THE ASYMMETRIC UNIT REMARK 300 CONTAINS TWO DIMERS. THE DIMERS ARE FORMED BY MOLECULE A AND D, AND REMARK 300 B AND C. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 227.92050 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -29.30750 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 VAL A 51 REMARK 465 PRO B 49 REMARK 465 ALA B 50 REMARK 465 SER B 208 REMARK 465 PRO C 49 REMARK 465 ALA C 50 REMARK 465 VAL C 51 REMARK 465 GLN C 207 REMARK 465 SER C 208 REMARK 465 ILE D 204 REMARK 465 LEU D 205 REMARK 465 SER D 206 REMARK 465 GLN D 207 REMARK 465 SER D 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 79 C2 NAG E 1 2.03 REMARK 500 O ASN D 119 N GLY D 122 2.05 REMARK 500 OG1 THR A 158 O HOH A 401 2.14 REMARK 500 O HOH A 453 O HOH A 454 2.17 REMARK 500 NH2 ARG A 161 O4 SO4 A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 123 CD GLU A 123 OE1 0.068 REMARK 500 GLU A 128 CD GLU A 128 OE1 0.066 REMARK 500 TRP A 144 CB TRP A 144 CG -0.124 REMARK 500 VAL A 156 CB VAL A 156 CG1 -0.146 REMARK 500 ARG A 160 CB ARG A 160 CG -0.205 REMARK 500 TYR A 162 CD1 TYR A 162 CE1 -0.098 REMARK 500 TYR A 162 CE2 TYR A 162 CD2 -0.121 REMARK 500 PRO A 172 C PRO A 172 O -0.131 REMARK 500 ARG A 173 C ARG A 173 O 0.114 REMARK 500 LYS A 179 CD LYS A 179 CE 0.179 REMARK 500 LYS A 179 CE LYS A 179 NZ 0.203 REMARK 500 ARG A 190 CD ARG A 190 NE -0.104 REMARK 500 ASP A 195 CB ASP A 195 CG 0.173 REMARK 500 TYR B 153 CE2 TYR B 153 CD2 -0.110 REMARK 500 TYR C 67 CD1 TYR C 67 CE1 -0.102 REMARK 500 GLU C 120 CD GLU C 120 OE2 0.097 REMARK 500 ARG D 64 CD ARG D 64 NE -0.124 REMARK 500 PHE D 72 CG PHE D 72 CD1 -0.105 REMARK 500 SER D 90 CA SER D 90 CB -0.092 REMARK 500 GLU D 96 CD GLU D 96 OE1 -0.072 REMARK 500 GLU D 123 CG GLU D 123 CD 0.095 REMARK 500 GLU D 123 CD GLU D 123 OE1 0.085 REMARK 500 GLU D 128 CG GLU D 128 CD 0.098 REMARK 500 TYR D 153 CG TYR D 153 CD2 -0.085 REMARK 500 ARG D 161 CG ARG D 161 CD -0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 74 CB - CG - CD1 ANGL. DEV. = -11.0 DEGREES REMARK 500 LEU A 130 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 173 CG - CD - NE ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 195 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP B 55 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 157 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP B 169 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 193 CB - CG - OD2 ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU B 200 CB - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP C 88 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 157 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG C 190 CG - CD - NE ANGL. DEV. = 12.9 DEGREES REMARK 500 TYR C 201 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 ILE C 204 CG1 - CB - CG2 ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU C 205 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP D 55 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG D 62 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 62 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG D 64 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ILE D 82 CG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP D 111 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU D 152 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG D 190 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP D 195 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP D 203 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -178.20 -174.27 REMARK 500 GLU A 141 -56.75 -124.78 REMARK 500 GLU A 142 131.04 -172.85 REMARK 500 TRP A 144 -2.37 74.24 REMARK 500 ARG A 177 50.61 -118.58 REMARK 500 VAL A 197 77.43 -114.48 REMARK 500 THR B 52 115.01 -39.03 REMARK 500 ASP B 53 149.17 -34.53 REMARK 500 ASN B 79 8.65 -69.02 REMARK 500 ALA B 101 175.88 174.54 REMARK 500 GLU B 141 -82.54 -103.40 REMARK 500 ASN B 143 50.22 35.19 REMARK 500 LEU B 152 -78.45 -104.25 REMARK 500 LYS B 168 -5.44 -58.48 REMARK 500 ARG B 177 33.79 -90.60 REMARK 500 LYS B 183 -41.59 -28.60 REMARK 500 GLU B 199 55.09 -100.17 REMARK 500 LEU B 200 -32.68 -135.03 REMARK 500 ALA C 101 178.59 177.06 REMARK 500 GLU C 141 -77.16 -132.46 REMARK 500 GLU C 142 -110.41 -97.03 REMARK 500 ASN C 143 73.75 -116.86 REMARK 500 TRP C 144 -9.56 83.42 REMARK 500 LEU C 200 -29.22 -33.57 REMARK 500 LYS C 202 2.30 -168.28 REMARK 500 LEU C 205 10.83 -61.73 REMARK 500 GLU D 141 -58.91 -124.74 REMARK 500 VAL D 197 58.73 -152.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 1G82 A 49 208 PIR A48137 A48137 49 208 DBREF 1G82 B 49 208 PIR A48137 A48137 49 208 DBREF 1G82 C 49 208 PIR A48137 A48137 49 208 DBREF 1G82 D 49 208 PIR A48137 A48137 49 208 SEQRES 1 A 160 PRO ALA VAL THR ASP LEU ASP HIS LEU LYS GLY ILE LEU SEQRES 2 A 160 ARG ARG ARG GLN LEU TYR CYS ARG THR GLY PHE HIS LEU SEQRES 3 A 160 GLU ILE PHE PRO ASN GLY THR ILE GLN GLY THR ARG LYS SEQRES 4 A 160 ASP HIS SER ARG PHE GLY ILE LEU GLU PHE ILE SER ILE SEQRES 5 A 160 ALA VAL GLY LEU VAL SER ILE ARG GLY VAL ASP SER GLY SEQRES 6 A 160 LEU TYR LEU GLY MET ASN GLU LYS GLY GLU LEU TYR GLY SEQRES 7 A 160 SER GLU LYS LEU THR GLN GLU CYS VAL PHE ARG GLU GLN SEQRES 8 A 160 PHE GLU GLU ASN TRP TYR ASN THR TYR SER SER ASN LEU SEQRES 9 A 160 TYR LYS HIS VAL ASP THR GLY ARG ARG TYR TYR VAL ALA SEQRES 10 A 160 LEU ASN LYS ASP GLY THR PRO ARG GLU GLY THR ARG THR SEQRES 11 A 160 LYS ARG HIS GLN LYS PHE THR HIS PHE LEU PRO ARG PRO SEQRES 12 A 160 VAL ASP PRO ASP LYS VAL PRO GLU LEU TYR LYS ASP ILE SEQRES 13 A 160 LEU SER GLN SER SEQRES 1 B 160 PRO ALA VAL THR ASP LEU ASP HIS LEU LYS GLY ILE LEU SEQRES 2 B 160 ARG ARG ARG GLN LEU TYR CYS ARG THR GLY PHE HIS LEU SEQRES 3 B 160 GLU ILE PHE PRO ASN GLY THR ILE GLN GLY THR ARG LYS SEQRES 4 B 160 ASP HIS SER ARG PHE GLY ILE LEU GLU PHE ILE SER ILE SEQRES 5 B 160 ALA VAL GLY LEU VAL SER ILE ARG GLY VAL ASP SER GLY SEQRES 6 B 160 LEU TYR LEU GLY MET ASN GLU LYS GLY GLU LEU TYR GLY SEQRES 7 B 160 SER GLU LYS LEU THR GLN GLU CYS VAL PHE ARG GLU GLN SEQRES 8 B 160 PHE GLU GLU ASN TRP TYR ASN THR TYR SER SER ASN LEU SEQRES 9 B 160 TYR LYS HIS VAL ASP THR GLY ARG ARG TYR TYR VAL ALA SEQRES 10 B 160 LEU ASN LYS ASP GLY THR PRO ARG GLU GLY THR ARG THR SEQRES 11 B 160 LYS ARG HIS GLN LYS PHE THR HIS PHE LEU PRO ARG PRO SEQRES 12 B 160 VAL ASP PRO ASP LYS VAL PRO GLU LEU TYR LYS ASP ILE SEQRES 13 B 160 LEU SER GLN SER SEQRES 1 C 160 PRO ALA VAL THR ASP LEU ASP HIS LEU LYS GLY ILE LEU SEQRES 2 C 160 ARG ARG ARG GLN LEU TYR CYS ARG THR GLY PHE HIS LEU SEQRES 3 C 160 GLU ILE PHE PRO ASN GLY THR ILE GLN GLY THR ARG LYS SEQRES 4 C 160 ASP HIS SER ARG PHE GLY ILE LEU GLU PHE ILE SER ILE SEQRES 5 C 160 ALA VAL GLY LEU VAL SER ILE ARG GLY VAL ASP SER GLY SEQRES 6 C 160 LEU TYR LEU GLY MET ASN GLU LYS GLY GLU LEU TYR GLY SEQRES 7 C 160 SER GLU LYS LEU THR GLN GLU CYS VAL PHE ARG GLU GLN SEQRES 8 C 160 PHE GLU GLU ASN TRP TYR ASN THR TYR SER SER ASN LEU SEQRES 9 C 160 TYR LYS HIS VAL ASP THR GLY ARG ARG TYR TYR VAL ALA SEQRES 10 C 160 LEU ASN LYS ASP GLY THR PRO ARG GLU GLY THR ARG THR SEQRES 11 C 160 LYS ARG HIS GLN LYS PHE THR HIS PHE LEU PRO ARG PRO SEQRES 12 C 160 VAL ASP PRO ASP LYS VAL PRO GLU LEU TYR LYS ASP ILE SEQRES 13 C 160 LEU SER GLN SER SEQRES 1 D 160 PRO ALA VAL THR ASP LEU ASP HIS LEU LYS GLY ILE LEU SEQRES 2 D 160 ARG ARG ARG GLN LEU TYR CYS ARG THR GLY PHE HIS LEU SEQRES 3 D 160 GLU ILE PHE PRO ASN GLY THR ILE GLN GLY THR ARG LYS SEQRES 4 D 160 ASP HIS SER ARG PHE GLY ILE LEU GLU PHE ILE SER ILE SEQRES 5 D 160 ALA VAL GLY LEU VAL SER ILE ARG GLY VAL ASP SER GLY SEQRES 6 D 160 LEU TYR LEU GLY MET ASN GLU LYS GLY GLU LEU TYR GLY SEQRES 7 D 160 SER GLU LYS LEU THR GLN GLU CYS VAL PHE ARG GLU GLN SEQRES 8 D 160 PHE GLU GLU ASN TRP TYR ASN THR TYR SER SER ASN LEU SEQRES 9 D 160 TYR LYS HIS VAL ASP THR GLY ARG ARG TYR TYR VAL ALA SEQRES 10 D 160 LEU ASN LYS ASP GLY THR PRO ARG GLU GLY THR ARG THR SEQRES 11 D 160 LYS ARG HIS GLN LYS PHE THR HIS PHE LEU PRO ARG PRO SEQRES 12 D 160 VAL ASP PRO ASP LYS VAL PRO GLU LEU TYR LYS ASP ILE SEQRES 13 D 160 LEU SER GLN SER MODRES 1G82 ASN A 79 ASN GLYCOSYLATION SITE MODRES 1G82 ASN B 79 ASN GLYCOSYLATION SITE MODRES 1G82 ASN C 79 ASN GLYCOSYLATION SITE MODRES 1G82 ASN D 79 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET NAG B 301 14 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 D 301 5 HET SO4 D 302 5 HET SO4 D 303 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 7(C8 H15 N O6) FORMUL 5 FUC 3(C6 H12 O5) FORMUL 8 SO4 12(O4 S 2-) FORMUL 21 HOH *147(H2 O) HELIX 1 1 THR A 52 LEU A 61 1 10 HELIX 2 2 THR A 131 CYS A 134 5 4 HELIX 3 3 GLN A 182 THR A 185 5 4 HELIX 4 4 ASP A 193 VAL A 197 5 5 HELIX 5 5 GLU A 199 ILE A 204 5 6 HELIX 6 6 ASP B 53 LEU B 61 1 9 HELIX 7 7 SER B 90 GLY B 93 5 4 HELIX 8 8 THR B 131 CYS B 134 5 4 HELIX 9 9 GLU B 174 THR B 178 5 5 HELIX 10 10 GLN B 182 THR B 185 5 4 HELIX 11 11 LEU B 200 LEU B 205 1 6 HELIX 12 12 ASP C 53 ARG C 62 1 10 HELIX 13 13 SER C 90 GLY C 93 5 4 HELIX 14 14 THR C 131 CYS C 134 5 4 HELIX 15 15 GLU C 174 THR C 178 5 5 HELIX 16 16 GLN C 182 THR C 185 5 4 HELIX 17 17 ASP C 193 VAL C 197 5 5 HELIX 18 18 VAL C 197 TYR C 201 5 5 HELIX 19 19 PRO D 49 LEU D 61 1 13 HELIX 20 20 SER D 90 GLY D 93 5 4 HELIX 21 21 THR D 131 CYS D 134 5 4 HELIX 22 22 GLU D 174 THR D 178 5 5 HELIX 23 23 GLN D 182 THR D 185 5 4 HELIX 24 24 ASP D 193 VAL D 197 5 5 HELIX 25 25 VAL D 197 LYS D 202 5 6 SHEET 1 A 8 ARG A 161 TYR A 163 0 SHEET 2 A 8 TYR A 145 LYS A 154 -1 N SER A 150 O TYR A 162 SHEET 3 A 8 PHE A 187 ARG A 190 -1 N PHE A 187 O ASN A 146 SHEET 4 A 8 ARG A 63 CYS A 68 -1 O GLN A 65 N ARG A 190 SHEET 5 A 8 LEU A 95 ALA A 101 -1 N LEU A 95 O ARG A 64 SHEET 6 A 8 LEU A 104 GLY A 109 -1 O LEU A 104 N ILE A 100 SHEET 7 A 8 PHE A 136 GLU A 142 -1 O PHE A 136 N VAL A 105 SHEET 8 A 8 TYR A 145 LYS A 154 -1 O TYR A 145 N GLU A 141 SHEET 1 B 2 HIS A 73 ILE A 76 0 SHEET 2 B 2 ILE A 82 THR A 85 -1 O GLN A 83 N GLU A 75 SHEET 1 C 2 TYR A 115 MET A 118 0 SHEET 2 C 2 LEU A 124 SER A 127 -1 O TYR A 125 N GLY A 117 SHEET 1 D11 ILE B 82 THR B 85 0 SHEET 2 D11 PHE B 72 ILE B 76 -1 N HIS B 73 O THR B 85 SHEET 3 D11 ARG B 63 CYS B 68 -1 O LEU B 66 N LEU B 74 SHEET 4 D11 LEU B 95 ALA B 101 -1 N LEU B 95 O ARG B 64 SHEET 5 D11 LEU B 104 GLY B 109 -1 N LEU B 104 O ALA B 101 SHEET 6 D11 PHE B 136 GLU B 142 -1 N PHE B 136 O VAL B 105 SHEET 7 D11 TYR B 145 LYS B 154 -1 N TYR B 145 O GLU B 142 SHEET 8 D11 ARG B 161 TYR B 163 -1 O TYR B 162 N SER B 150 SHEET 9 D11 TYR B 145 LYS B 154 -1 N SER B 150 O TYR B 162 SHEET 10 D11 PHE B 187 ARG B 190 -1 O PHE B 187 N ASN B 146 SHEET 11 D11 ARG B 63 CYS B 68 -1 O GLN B 65 N ARG B 190 SHEET 1 E 2 TYR B 115 MET B 118 0 SHEET 2 E 2 LEU B 124 SER B 127 -1 O TYR B 125 N GLY B 117 SHEET 1 F11 ILE C 82 THR C 85 0 SHEET 2 F11 PHE C 72 ILE C 76 -1 N HIS C 73 O THR C 85 SHEET 3 F11 ARG C 63 CYS C 68 -1 O LEU C 66 N LEU C 74 SHEET 4 F11 LEU C 95 ALA C 101 -1 O LEU C 95 N ARG C 64 SHEET 5 F11 LEU C 104 GLY C 109 -1 N LEU C 104 O ALA C 101 SHEET 6 F11 PHE C 136 PHE C 140 -1 N PHE C 136 O VAL C 105 SHEET 7 F11 ASN C 146 LYS C 154 -1 N THR C 147 O GLN C 139 SHEET 8 F11 ARG C 161 TYR C 163 -1 O TYR C 162 N SER C 150 SHEET 9 F11 ASN C 146 LYS C 154 -1 N SER C 150 O TYR C 162 SHEET 10 F11 PHE C 187 ARG C 190 -1 N PHE C 187 O ASN C 146 SHEET 11 F11 ARG C 63 CYS C 68 -1 O GLN C 65 N ARG C 190 SHEET 1 G 2 TYR C 115 MET C 118 0 SHEET 2 G 2 LEU C 124 SER C 127 -1 O TYR C 125 N GLY C 117 SHEET 1 H 8 ARG D 161 TYR D 163 0 SHEET 2 H 8 TYR D 145 LYS D 154 -1 N SER D 150 O TYR D 162 SHEET 3 H 8 PHE D 187 ARG D 190 -1 O PHE D 187 N ASN D 146 SHEET 4 H 8 ARG D 63 CYS D 68 -1 O GLN D 65 N ARG D 190 SHEET 5 H 8 LEU D 95 ALA D 101 -1 N LEU D 95 O ARG D 64 SHEET 6 H 8 LEU D 104 GLY D 109 -1 N LEU D 104 O ALA D 101 SHEET 7 H 8 PHE D 136 GLU D 142 -1 N PHE D 136 O VAL D 105 SHEET 8 H 8 TYR D 145 LYS D 154 -1 N TYR D 145 O GLU D 142 SHEET 1 I 2 HIS D 73 ILE D 76 0 SHEET 2 I 2 ILE D 82 THR D 85 -1 O GLN D 83 N GLU D 75 SHEET 1 J 2 TYR D 115 MET D 118 0 SHEET 2 J 2 LEU D 124 SER D 127 -1 O TYR D 125 N GLY D 117 LINK ND2 ASN A 79 C1 NAG E 1 1555 1555 1.42 LINK ND2 ASN B 79 C1 NAG B 301 1555 1555 1.46 LINK ND2 ASN C 79 C1 NAG F 1 1555 1555 1.46 LINK ND2 ASN D 79 C1 NAG G 1 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.50 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.47 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.43 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.47 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.44 CRYST1 151.947 151.947 117.230 90.00 90.00 90.00 I 41 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008530 0.00000