HEADER TRANSFERASE 20-NOV-00 1G8O TITLE CRYSTALLOGRAPHIC STRUCTURE OF THE NATIVE BOVINE ALPHA-1,3- TITLE 2 GALACTOSYLTRANSFERASE CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: 13GALT, ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 6 EC: 2.4.1.151; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GGTA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA-BETA-ALPHA, UDP BINDING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.N.GASTINEL,C.BIGON,A.K.MISRA,O.HINDSGAUL,J.H.SHAPER,D.H.JOZIASSE REVDAT 5 07-FEB-24 1G8O 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1G8O 1 REMARK REVDAT 3 24-FEB-09 1G8O 1 VERSN REVDAT 2 01-APR-03 1G8O 1 JRNL REVDAT 1 20-MAY-01 1G8O 0 JRNL AUTH L.N.GASTINEL,C.BIGNON,A.K.MISRA,O.HINDSGAUL,J.H.SHAPER, JRNL AUTH 2 D.H.JOZIASSE JRNL TITL BOVINE ALPHA1,3-GALACTOSYLTRANSFERASE CATALYTIC DOMAIN JRNL TITL 2 STRUCTURE AND ITS RELATIONSHIP WITH ABO HISTO-BLOOD GROUP JRNL TITL 3 AND GLYCOSPHINGOLIPID GLYCOSYLTRANSFERASES. JRNL REF EMBO J. V. 20 638 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11179209 JRNL DOI 10.1093/EMBOJ/20.4.638 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 2.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 3495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 383 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 383 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.84000 REMARK 3 B22 (A**2) : -8.84000 REMARK 3 B33 (A**2) : 17.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.170 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODELING, REMARK 3 FLAT MODEL REMARK 4 REMARK 4 1G8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9324 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.07500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODEL MAD SOLVED AT 2.8 ANGSTROMS RESOLUTION REMARK 200 1FG5.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 TO 1.6 M SODIUM ACETATE, 10 MM REMARK 280 UMP, 2 MM MNCL2, 500 MM NACL, 0.1 M CACODYLATE, PH 6.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.35550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.77900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.77900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.17775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.77900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.77900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.53325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.77900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.77900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.17775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.77900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.77900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.53325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.35550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 LEU A 72 REMARK 465 VAL A 73 REMARK 465 PRO A 74 REMARK 465 ARG A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 HIS A 78 REMARK 465 MET A 79 REMARK 465 GLU A 80 REMARK 465 VAL A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 359 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 256 O PHE A 272 2.08 REMARK 500 O GLU A 217 O HOH A 574 2.14 REMARK 500 O GLN A 357 O HOH A 585 2.18 REMARK 500 NE ARG A 182 O HOH A 597 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 593 O HOH A 593 8665 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 360 CD GLU A 360 OE1 0.071 REMARK 500 TYR A 361 CZ TYR A 361 OH 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 361 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 TYR A 361 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 ASN A 362 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 -12.89 -10.49 REMARK 500 HIS A 213 -30.83 -156.61 REMARK 500 PRO A 255 -45.21 -22.49 REMARK 500 HIS A 315 -124.31 44.97 REMARK 500 CYS A 338 73.47 -153.92 REMARK 500 LEU A 345 73.84 -154.25 REMARK 500 GLN A 357 -57.26 -123.95 REMARK 500 THR A 358 -155.17 -166.93 REMARK 500 LYS A 359 -147.84 169.62 REMARK 500 GLU A 360 -93.37 -120.35 REMARK 500 TYR A 361 111.35 -166.35 REMARK 500 ARG A 365 48.62 -93.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 361 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 475 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD2 REMARK 620 2 ASP A 227 OD1 102.7 REMARK 620 3 HOH A 573 O 94.6 91.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 474 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FG5 RELATED DB: PDB REMARK 900 1FG5 IS THE CRYSTALLOGRAPHIC STRUCTURE OF THE SELENIATED NATIVE REMARK 900 ALPHA1,3GALACTOSYLTRANSFERASE SOLVED AND REFINED AT 2.8 ANGSTROM REMARK 900 RESOLUTION BY MAD TECHNIQUE REMARK 900 RELATED ID: 1G93 RELATED DB: PDB REMARK 900 N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE COMPLEXED REMARK 900 WITH HG-UDP-GALACTOSE AT 2.5 A. DBREF 1G8O A 80 368 UNP P14769 GGTA1_BOVIN 80 368 SEQADV 1G8O MET A 59 UNP P14769 CLONING ARTIFACT SEQADV 1G8O GLY A 60 UNP P14769 CLONING ARTIFACT SEQADV 1G8O SER A 61 UNP P14769 CLONING ARTIFACT SEQADV 1G8O SER A 62 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 63 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 64 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 65 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 66 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 67 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 68 UNP P14769 CLONING ARTIFACT SEQADV 1G8O SER A 69 UNP P14769 CLONING ARTIFACT SEQADV 1G8O SER A 70 UNP P14769 CLONING ARTIFACT SEQADV 1G8O GLY A 71 UNP P14769 CLONING ARTIFACT SEQADV 1G8O LEU A 72 UNP P14769 CLONING ARTIFACT SEQADV 1G8O VAL A 73 UNP P14769 CLONING ARTIFACT SEQADV 1G8O PRO A 74 UNP P14769 CLONING ARTIFACT SEQADV 1G8O ARG A 75 UNP P14769 CLONING ARTIFACT SEQADV 1G8O GLY A 76 UNP P14769 CLONING ARTIFACT SEQADV 1G8O SER A 77 UNP P14769 CLONING ARTIFACT SEQADV 1G8O HIS A 78 UNP P14769 CLONING ARTIFACT SEQADV 1G8O MET A 79 UNP P14769 CLONING ARTIFACT SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET GLU SER LYS LEU LYS SEQRES 3 A 310 LEU SER ASP TRP PHE ASN PRO PHE LYS ARG PRO GLU VAL SEQRES 4 A 310 VAL THR MET THR LYS TRP LYS ALA PRO VAL VAL TRP GLU SEQRES 5 A 310 GLY THR TYR ASN ARG ALA VAL LEU ASP ASN TYR TYR ALA SEQRES 6 A 310 LYS GLN LYS ILE THR VAL GLY LEU THR VAL PHE ALA VAL SEQRES 7 A 310 GLY ARG TYR ILE GLU HIS TYR LEU GLU GLU PHE LEU THR SEQRES 8 A 310 SER ALA ASN LYS HIS PHE MET VAL GLY HIS PRO VAL ILE SEQRES 9 A 310 PHE TYR ILE MET VAL ASP ASP VAL SER ARG MET PRO LEU SEQRES 10 A 310 ILE GLU LEU GLY PRO LEU ARG SER PHE LYS VAL PHE LYS SEQRES 11 A 310 ILE LYS PRO GLU LYS ARG TRP GLN ASP ILE SER MET MET SEQRES 12 A 310 ARG MET LYS THR ILE GLY GLU HIS ILE VAL ALA HIS ILE SEQRES 13 A 310 GLN HIS GLU VAL ASP PHE LEU PHE CYS MET ASP VAL ASP SEQRES 14 A 310 GLN VAL PHE GLN ASP LYS PHE GLY VAL GLU THR LEU GLY SEQRES 15 A 310 GLU SER VAL ALA GLN LEU GLN ALA TRP TRP TYR LYS ALA SEQRES 16 A 310 ASP PRO ASN ASP PHE THR TYR GLU ARG ARG LYS GLU SER SEQRES 17 A 310 ALA ALA TYR ILE PRO PHE GLY GLU GLY ASP PHE TYR TYR SEQRES 18 A 310 HIS ALA ALA ILE PHE GLY GLY THR PRO THR GLN VAL LEU SEQRES 19 A 310 ASN ILE THR GLN GLU CYS PHE LYS GLY ILE LEU LYS ASP SEQRES 20 A 310 LYS LYS ASN ASP ILE GLU ALA GLN TRP HIS ASP GLU SER SEQRES 21 A 310 HIS LEU ASN LYS TYR PHE LEU LEU ASN LYS PRO THR LYS SEQRES 22 A 310 ILE LEU SER PRO GLU TYR CYS TRP ASP TYR HIS ILE GLY SEQRES 23 A 310 LEU PRO ALA ASP ILE LYS LEU VAL LYS MET SER TRP GLN SEQRES 24 A 310 THR LYS GLU TYR ASN VAL VAL ARG ASN ASN VAL HET MN A 475 1 HET U5P A 474 21 HETNAM MN MANGANESE (II) ION HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 U5P C9 H13 N2 O9 P FORMUL 4 HOH *130(H2 O) HELIX 1 1 LYS A 84 TRP A 88 5 5 HELIX 2 2 ASN A 90 ARG A 94 5 5 HELIX 3 3 ASN A 114 GLN A 125 1 12 HELIX 4 4 ARG A 138 PHE A 155 1 18 HELIX 5 5 ASP A 169 MET A 173 5 5 HELIX 6 6 ARG A 194 HIS A 213 1 20 HELIX 7 7 HIS A 213 VAL A 218 1 6 HELIX 8 8 GLY A 235 LEU A 239 5 5 HELIX 9 9 ASP A 254 PHE A 258 5 5 HELIX 10 10 THR A 287 ASN A 308 1 22 HELIX 11 11 TRP A 314 ASN A 327 1 14 HELIX 12 12 PRO A 335 CYS A 338 5 4 HELIX 13 13 ASP A 340 GLY A 344 5 5 SHEET 1 A 8 VAL A 107 VAL A 108 0 SHEET 2 A 8 LYS A 331 LEU A 333 1 O ILE A 332 N VAL A 108 SHEET 3 A 8 SER A 242 LEU A 246 1 O SER A 242 N LYS A 331 SHEET 4 A 8 TYR A 279 GLY A 286 -1 N HIS A 280 O GLN A 245 SHEET 5 A 8 PHE A 220 MET A 224 -1 N LEU A 221 O GLY A 286 SHEET 6 A 8 VAL A 129 ALA A 135 1 N GLY A 130 O PHE A 220 SHEET 7 A 8 VAL A 161 VAL A 167 1 O ILE A 162 N LEU A 131 SHEET 8 A 8 ARG A 182 LYS A 188 1 O SER A 183 N PHE A 163 SHEET 1 B 2 GLN A 228 PHE A 230 0 SHEET 2 B 2 MET A 354 TRP A 356 -1 O SER A 355 N VAL A 229 LINK OD2 ASP A 225 MN MN A 475 1555 1555 2.47 LINK OD1 ASP A 227 MN MN A 475 1555 1555 2.51 LINK MN MN A 475 O HOH A 573 1555 1555 2.29 SITE 1 AC1 5 ASP A 225 ASP A 227 ASN A 362 U5P A 474 SITE 2 AC1 5 HOH A 573 SITE 1 AC2 16 PHE A 134 ALA A 135 VAL A 136 ARG A 138 SITE 2 AC2 16 TYR A 139 ILE A 198 SER A 199 ARG A 202 SITE 3 AC2 16 ASP A 225 VAL A 226 ASP A 227 LYS A 359 SITE 4 AC2 16 GLU A 360 ASN A 362 MN A 475 HOH A 478 CRYST1 95.558 95.558 112.711 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008872 0.00000