HEADER TRANSFERASE 22-NOV-00 1G97 TITLE S.PNEUMONIAE GLMU COMPLEXED WITH UDP-N-ACETYLGLUCOSAMINE AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLMU, UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLMU, ACETYLTRANSFERASE, URIDYLTRANSFERASE, PYROPHOSPHORYLASE, LEFT- KEYWDS 2 HANDED BETA-SHEET HELIX, TRIMER, MAGNESIUM, UDP-N-ACETYLGLUCOSAMINE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOSTREWA,A.D'ARCY,M.KAMBER REVDAT 5 09-AUG-23 1G97 1 REMARK LINK REVDAT 4 13-JUL-11 1G97 1 VERSN REVDAT 3 24-FEB-09 1G97 1 VERSN REVDAT 2 01-APR-03 1G97 1 JRNL REVDAT 1 22-MAY-01 1G97 0 JRNL AUTH D.KOSTREWA,A.D'ARCY,B.TAKACS,M.KAMBER JRNL TITL CRYSTAL STRUCTURES OF STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLMU, IN JRNL TITL 3 APO FORM AT 2.33 A RESOLUTION AND IN COMPLEX WITH JRNL TITL 4 UDP-N-ACETYLGLUCOSAMINE AND MG(2+) AT 1.96 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 305 279 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11124906 JRNL DOI 10.1006/JMBI.2000.4296 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 33242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3042 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.69900 REMARK 3 B22 (A**2) : -2.69900 REMARK 3 B33 (A**2) : 5.39900 REMARK 3 B12 (A**2) : -6.73700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.500 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.000 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT MASK REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : ROCHE.PARAM REMARK 3 PARAMETER FILE 3 : UNG.PRX REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ROCHE.TOP REMARK 3 TOPOLOGY FILE 3 : UNG.TPX REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION WITH REMARK 3 ELECTRON DENSITY = 0.34 E/A**3, B-FACTOR = 26.9 A**2. REMARK 3 WATER MOLECULES ARE ORDERED WITH ASCENDING B-FACTORS. REMARK 3 THE FOLLOWING AMINO ACID RESIDUES WERE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY MAPS: 1 AND 448-459. REMARK 3 THE FOLLOWING AMINO ACIDS HAVE HIGH AVERAGE B-FACTORS REMARK 3 (>= 50 A**2) AND POOR ELECTRON DENSITY: 61, 90-92, 120-122, REMARK 3 145-146, 179, 188-190, 387-391, 441, 447. REMARK 4 REMARK 4 1G97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: APO FORM OF GLMU, PDB ENTRY CODE 1G95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS/TRIS, 0.2 M AMMONIUM REMARK 280 SULFATE, 25 % PEG 3350, SOAKED WITH 10 MM UDP-N- REMARK 280 ACETYLGLUCOSAMINE AND 10 MM MG(CL)2, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.83000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.03731 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.83000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.03731 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.83000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.03731 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.83000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.03731 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.83000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.03731 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.83000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.03731 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.07463 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.07463 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.07463 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.07463 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 183.93333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.07463 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 183.93333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.07463 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 183.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: REMARK 300 -Y+1, X-Y, Z REMARK 300 AND REMARK 300 -X+Y+1, -X+1, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.66000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.83000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 81.11194 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 448 REMARK 465 ALA A 449 REMARK 465 THR A 450 REMARK 465 ARG A 451 REMARK 465 LEU A 452 REMARK 465 PRO A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 PRO A 456 REMARK 465 LYS A 457 REMARK 465 ASN A 458 REMARK 465 GLN A 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 27.41 -142.41 REMARK 500 ASN A 146 31.89 -93.95 REMARK 500 ASN A 256 88.77 -153.80 REMARK 500 ASP A 300 51.59 39.23 REMARK 500 ASN A 311 57.74 38.35 REMARK 500 GLU A 316 54.50 37.59 REMARK 500 LEU A 363 56.97 36.15 REMARK 500 LYS A 389 -47.22 -137.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 460 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 102 OD2 REMARK 620 2 ASN A 227 OD1 92.6 REMARK 620 3 UD1 A 500 O2B 173.8 93.3 REMARK 620 4 UD1 A 500 O1A 84.2 91.3 93.8 REMARK 620 5 HOH A 512 O 99.8 85.8 82.5 175.2 REMARK 620 6 HOH A 540 O 85.0 173.8 89.3 94.1 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 461 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 405 OD1 REMARK 620 2 ASN A 405 OD1 87.4 REMARK 620 3 ASN A 405 OD1 87.4 87.4 REMARK 620 4 HOH A 504 O 89.9 176.0 95.4 REMARK 620 5 HOH A 504 O 95.4 89.9 176.0 87.5 REMARK 620 6 HOH A 504 O 176.0 95.4 89.9 87.5 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G95 RELATED DB: PDB REMARK 900 1G95 CONTAINS THE SAME PROTEIN IN ITS APO FORM. DBREF 1G97 A 1 459 UNP Q97R46 Q97R46_STRPN 1 459 SEQRES 1 A 459 MET SER ASN PHE ALA ILE ILE LEU ALA ALA GLY LYS GLY SEQRES 2 A 459 THR ARG MET LYS SER ASP LEU PRO LYS VAL LEU HIS LYS SEQRES 3 A 459 VAL ALA GLY ILE SER MET LEU GLU HIS VAL PHE ARG SER SEQRES 4 A 459 VAL GLY ALA ILE GLN PRO GLU LYS THR VAL THR VAL VAL SEQRES 5 A 459 GLY HIS LYS ALA GLU LEU VAL GLU GLU VAL LEU ALA GLY SEQRES 6 A 459 GLN THR GLU PHE VAL THR GLN SER GLU GLN LEU GLY THR SEQRES 7 A 459 GLY HIS ALA VAL MET MET THR GLU PRO ILE LEU GLU GLY SEQRES 8 A 459 LEU SER GLY HIS THR LEU VAL ILE ALA GLY ASP THR PRO SEQRES 9 A 459 LEU ILE THR GLY GLU SER LEU LYS ASN LEU ILE ASP PHE SEQRES 10 A 459 HIS ILE ASN HIS LYS ASN VAL ALA THR ILE LEU THR ALA SEQRES 11 A 459 GLU THR ASP ASN PRO PHE GLY TYR GLY ARG ILE VAL ARG SEQRES 12 A 459 ASN ASP ASN ALA GLU VAL LEU ARG ILE VAL GLU GLN LYS SEQRES 13 A 459 ASP ALA THR ASP PHE GLU LYS GLN ILE LYS GLU ILE ASN SEQRES 14 A 459 THR GLY THR TYR VAL PHE ASP ASN GLU ARG LEU PHE GLU SEQRES 15 A 459 ALA LEU LYS ASN ILE ASN THR ASN ASN ALA GLN GLY GLU SEQRES 16 A 459 TYR TYR ILE THR ASP VAL ILE GLY ILE PHE ARG GLU THR SEQRES 17 A 459 GLY GLU LYS VAL GLY ALA TYR THR LEU LYS ASP PHE ASP SEQRES 18 A 459 GLU SER LEU GLY VAL ASN ASP ARG VAL ALA LEU ALA THR SEQRES 19 A 459 ALA GLU SER VAL MET ARG ARG ARG ILE ASN HIS LYS HIS SEQRES 20 A 459 MET VAL ASN GLY VAL SER PHE VAL ASN PRO GLU ALA THR SEQRES 21 A 459 TYR ILE ASP ILE ASP VAL GLU ILE ALA SER GLU VAL GLN SEQRES 22 A 459 ILE GLU ALA ASN VAL THR LEU LYS GLY GLN THR LYS ILE SEQRES 23 A 459 GLY ALA GLU THR VAL LEU THR ASN GLY THR TYR VAL VAL SEQRES 24 A 459 ASP SER THR ILE GLY ALA GLY ALA VAL ILE THR ASN SER SEQRES 25 A 459 MET ILE GLU GLU SER SER VAL ALA ASP GLY VAL ILE VAL SEQRES 26 A 459 GLY PRO TYR ALA HIS ILE ARG PRO ASN SER SER LEU GLY SEQRES 27 A 459 ALA GLN VAL HIS ILE GLY ASN PHE VAL GLU VAL LYS GLY SEQRES 28 A 459 SER SER ILE GLY GLU ASN THR LYS ALA GLY HIS LEU THR SEQRES 29 A 459 TYR ILE GLY ASN CYS GLU VAL GLY SER ASN VAL ASN PHE SEQRES 30 A 459 GLY ALA GLY THR ILE THR VAL ASN TYR ASP GLY LYS ASN SEQRES 31 A 459 LYS TYR LYS THR VAL ILE GLY ASN ASN VAL PHE VAL GLY SEQRES 32 A 459 SER ASN SER THR ILE ILE ALA PRO VAL GLU LEU GLY ASP SEQRES 33 A 459 ASN SER LEU VAL GLY ALA GLY SER THR ILE THR LYS ASP SEQRES 34 A 459 VAL PRO ALA ASP ALA ILE ALA ILE GLY ARG GLY ARG GLN SEQRES 35 A 459 ILE ASN LYS ASP GLU TYR ALA THR ARG LEU PRO HIS HIS SEQRES 36 A 459 PRO LYS ASN GLN HET MG A 460 1 HET NA A 461 1 HET UD1 A 500 39 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 2 MG MG 2+ FORMUL 3 NA NA 1+ FORMUL 4 UD1 C17 H27 N3 O17 P2 FORMUL 5 HOH *482(H2 O) HELIX 1 1 GLY A 13 LYS A 17 5 5 HELIX 2 2 PRO A 21 LEU A 24 5 4 HELIX 3 3 MET A 32 GLY A 41 1 10 HELIX 4 4 ALA A 42 GLN A 44 5 3 HELIX 5 5 LYS A 55 LEU A 63 1 9 HELIX 6 6 GLY A 77 MET A 84 1 8 HELIX 7 7 THR A 85 GLU A 90 1 6 HELIX 8 8 THR A 107 HIS A 121 1 15 HELIX 9 9 GLU A 154 ALA A 158 5 5 HELIX 10 10 THR A 159 GLN A 164 1 6 HELIX 11 11 ASN A 177 LYS A 185 1 9 HELIX 12 12 TYR A 197 THR A 199 5 3 HELIX 13 13 ASP A 200 THR A 208 1 9 HELIX 14 14 ASP A 219 LEU A 224 5 6 HELIX 15 15 ASP A 228 ASN A 250 1 23 HELIX 16 16 ASN A 256 THR A 260 5 5 SHEET 1 A 7 GLU A 68 THR A 71 0 SHEET 2 A 7 LYS A 47 VAL A 52 1 O THR A 48 N GLU A 68 SHEET 3 A 7 ASN A 3 LEU A 8 1 O ASN A 3 N LYS A 47 SHEET 4 A 7 HIS A 95 ALA A 100 1 O HIS A 95 N PHE A 4 SHEET 5 A 7 GLU A 167 ASP A 176 -1 O TYR A 173 N VAL A 98 SHEET 6 A 7 ALA A 125 GLU A 131 -1 N THR A 126 O VAL A 174 SHEET 7 A 7 VAL A 212 THR A 216 1 N GLY A 213 O ALA A 125 SHEET 1 B 2 LYS A 26 VAL A 27 0 SHEET 2 B 2 ILE A 30 SER A 31 -1 O ILE A 30 N VAL A 27 SHEET 1 C 2 ARG A 140 ARG A 143 0 SHEET 2 C 2 VAL A 149 VAL A 153 -1 N LEU A 150 O VAL A 142 SHEET 1 D11 ILE A 435 ALA A 436 0 SHEET 2 D11 LEU A 419 VAL A 420 1 O LEU A 419 N ALA A 436 SHEET 3 D11 PHE A 401 VAL A 402 1 O PHE A 401 N VAL A 420 SHEET 4 D11 ASN A 376 PHE A 377 1 O ASN A 376 N VAL A 402 SHEET 5 D11 LYS A 359 GLY A 367 1 O LYS A 359 N PHE A 377 SHEET 6 D11 HIS A 342 LYS A 350 1 O HIS A 342 N ALA A 360 SHEET 7 D11 ILE A 324 VAL A 325 1 O ILE A 324 N ILE A 343 SHEET 8 D11 VAL A 308 ILE A 309 1 O VAL A 308 N VAL A 325 SHEET 9 D11 VAL A 291 LEU A 292 1 O VAL A 291 N ILE A 309 SHEET 10 D11 GLN A 273 ILE A 274 1 O GLN A 273 N LEU A 292 SHEET 11 D11 SER A 253 PHE A 254 1 O SER A 253 N ILE A 274 SHEET 1 E11 ILE A 435 ALA A 436 0 SHEET 2 E11 LEU A 419 VAL A 420 1 O LEU A 419 N ALA A 436 SHEET 3 E11 PHE A 401 VAL A 402 1 O PHE A 401 N VAL A 420 SHEET 4 E11 ASN A 376 PHE A 377 1 O ASN A 376 N VAL A 402 SHEET 5 E11 LYS A 359 GLY A 367 1 O LYS A 359 N PHE A 377 SHEET 6 E11 HIS A 342 LYS A 350 1 O HIS A 342 N ALA A 360 SHEET 7 E11 HIS A 330 ILE A 331 1 N HIS A 330 O VAL A 347 SHEET 8 E11 MET A 313 GLU A 315 1 O MET A 313 N ILE A 331 SHEET 9 E11 TYR A 297 VAL A 299 1 O TYR A 297 N ILE A 314 SHEET 10 E11 THR A 279 LYS A 281 1 O THR A 279 N VAL A 298 SHEET 11 E11 TYR A 261 ILE A 262 1 O TYR A 261 N LEU A 280 SHEET 1 F 9 GLU A 267 ILE A 268 0 SHEET 2 F 9 LYS A 285 ILE A 286 1 N ILE A 286 O GLU A 267 SHEET 3 F 9 THR A 302 ILE A 303 1 N ILE A 303 O LYS A 285 SHEET 4 F 9 SER A 318 VAL A 319 1 N VAL A 319 O THR A 302 SHEET 5 F 9 SER A 336 LEU A 337 1 N LEU A 337 O SER A 318 SHEET 6 F 9 SER A 353 ILE A 354 1 N ILE A 354 O SER A 336 SHEET 7 F 9 CYS A 369 VAL A 371 1 O CYS A 369 N SER A 353 SHEET 8 F 9 THR A 394 ILE A 396 1 O THR A 394 N GLU A 370 SHEET 9 F 9 GLU A 413 LEU A 414 1 N LEU A 414 O VAL A 395 SHEET 1 G 3 ILE A 382 VAL A 384 0 SHEET 2 G 3 THR A 407 ILE A 409 1 O ILE A 408 N VAL A 384 SHEET 3 G 3 THR A 425 ILE A 426 1 N ILE A 426 O THR A 407 LINK OD2 ASP A 102 MG MG A 460 1555 1555 2.11 LINK OD1 ASN A 227 MG MG A 460 1555 1555 2.18 LINK OD1 ASN A 405 NA NA A 461 1555 1555 2.23 LINK OD1 ASN A 405 NA NA A 461 3665 1555 2.23 LINK OD1 ASN A 405 NA NA A 461 2655 1555 2.23 LINK MG MG A 460 O2B UD1 A 500 1555 1555 2.03 LINK MG MG A 460 O1A UD1 A 500 1555 1555 2.07 LINK MG MG A 460 O HOH A 512 1555 1555 2.06 LINK MG MG A 460 O HOH A 540 1555 1555 2.21 LINK NA NA A 461 O HOH A 504 1555 1555 2.14 LINK NA NA A 461 O HOH A 504 1555 3665 2.14 LINK NA NA A 461 O HOH A 504 1555 2655 2.14 CISPEP 1 GLY A 326 PRO A 327 0 -0.09 CISPEP 2 ALA A 410 PRO A 411 0 -0.13 SITE 1 AC1 6 LYS A 22 ASP A 102 ASN A 227 UD1 A 500 SITE 2 AC1 6 HOH A 512 HOH A 540 SITE 1 AC2 2 ASN A 405 HOH A 504 SITE 1 AC3 32 LEU A 8 ALA A 10 GLY A 11 LYS A 22 SITE 2 AC3 32 GLN A 72 GLN A 75 LEU A 76 GLY A 77 SITE 3 AC3 32 THR A 78 GLY A 101 ASP A 102 TYR A 138 SITE 4 AC3 32 GLY A 139 GLU A 154 ASN A 169 THR A 170 SITE 5 AC3 32 TYR A 197 ILE A 198 THR A 199 GLY A 225 SITE 6 AC3 32 ASN A 227 MG A 460 HOH A 512 HOH A 513 SITE 7 AC3 32 HOH A 540 HOH A 544 HOH A 560 HOH A 562 SITE 8 AC3 32 HOH A 630 HOH A 752 HOH A 824 HOH A 864 CRYST1 93.660 93.660 275.900 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010677 0.006164 0.000000 0.00000 SCALE2 0.000000 0.012329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003625 0.00000