HEADER TRANSFERASE 22-NOV-00 1G97 TITLE S.PNEUMONIAE GLMU COMPLEXED WITH UDP-N-ACETYLGLUCOSAMINE AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLMU, UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLMU, ACETYLTRANSFERASE, URIDYLTRANSFERASE, PYROPHOSPHORYLASE, LEFT- KEYWDS 2 HANDED BETA-SHEET HELIX, TRIMER, MAGNESIUM, UDP-N-ACETYLGLUCOSAMINE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOSTREWA,A.D'ARCY,M.KAMBER REVDAT 4 13-JUL-11 1G97 1 VERSN REVDAT 3 24-FEB-09 1G97 1 VERSN REVDAT 2 01-APR-03 1G97 1 JRNL REVDAT 1 22-MAY-01 1G97 0 JRNL AUTH D.KOSTREWA,A.D'ARCY,B.TAKACS,M.KAMBER JRNL TITL CRYSTAL STRUCTURES OF STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLMU, IN JRNL TITL 3 APO FORM AT 2.33 A RESOLUTION AND IN COMPLEX WITH JRNL TITL 4 UDP-N-ACETYLGLUCOSAMINE AND MG(2+) AT 1.96 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 305 279 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11124906 JRNL DOI 10.1006/JMBI.2000.4296 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 33242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3042 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.69900 REMARK 3 B22 (A**2) : -2.69900 REMARK 3 B33 (A**2) : 5.39900 REMARK 3 B12 (A**2) : -6.73700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.500 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.000 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT MASK REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : ROCHE.PARAM REMARK 3 PARAMETER FILE 3 : UNG.PRX REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ROCHE.TOP REMARK 3 TOPOLOGY FILE 3 : UNG.TPX REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 BULK SOLVENT CORRECTION WITH REMARK 3 ELECTRON DENSITY = 0.34 E/A**3, B-FACTOR = 26.9 A**2. REMARK 3 WATER MOLECULES ARE ORDERED WITH ASCENDING B-FACTORS. REMARK 3 THE FOLLOWING AMINO ACID RESIDUES WERE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY MAPS: 1 AND 448-459. REMARK 3 THE FOLLOWING AMINO ACIDS HAVE HIGH AVERAGE B-FACTORS REMARK 3 (>= 50 A**2) AND POOR ELECTRON DENSITY: 61, 90-92, 120-122, REMARK 3 145-146, 179, 188-190, 387-391, 441, 447. REMARK 4 REMARK 4 1G97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: APO FORM OF GLMU, PDB ENTRY CODE 1G95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS/TRIS, 0.2 M AMMONIUM REMARK 280 SULFATE, 25 % PEG 3350, SOAKED WITH 10 MM UDP-N-ACETYLGLUCOSAMINE REMARK 280 AND 10 MM MG(CL)2, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.83000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.03731 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.83000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.03731 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.83000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.03731 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.96667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.83000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.03731 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.83000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.03731 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.83000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.03731 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.96667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.07463 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.07463 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.07463 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 183.93333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.07463 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 183.93333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.07463 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 183.93333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.07463 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 183.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: REMARK 300 -Y+1, X-Y, Z REMARK 300 AND REMARK 300 -X+Y+1, -X+1, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.66000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 46.83000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 81.11194 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 448 REMARK 465 ALA A 449 REMARK 465 THR A 450 REMARK 465 ARG A 451 REMARK 465 LEU A 452 REMARK 465 PRO A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 PRO A 456 REMARK 465 LYS A 457 REMARK 465 ASN A 458 REMARK 465 GLN A 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 27.41 -142.41 REMARK 500 ASN A 146 31.89 -93.95 REMARK 500 ASN A 256 88.77 -153.80 REMARK 500 ASP A 300 51.59 39.23 REMARK 500 ASN A 311 57.74 38.35 REMARK 500 GLU A 316 54.50 37.59 REMARK 500 LEU A 363 56.97 36.15 REMARK 500 LYS A 389 -47.22 -137.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 748 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 794 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A 892 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 945 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 460 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UD1 A 500 O2B REMARK 620 2 ASP A 102 OD2 173.8 REMARK 620 3 UD1 A 500 O1A 93.8 84.2 REMARK 620 4 HOH A 512 O 82.5 99.8 175.2 REMARK 620 5 HOH A 540 O 89.3 85.0 94.1 88.9 REMARK 620 6 ASN A 227 OD1 93.3 92.6 91.3 85.8 173.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 461 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 405 OD1 REMARK 620 2 HOH A 504 O 89.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G95 RELATED DB: PDB REMARK 900 1G95 CONTAINS THE SAME PROTEIN IN ITS APO FORM. DBREF 1G97 A 1 459 UNP Q97R46 Q97R46_STRPN 1 459 SEQRES 1 A 459 MET SER ASN PHE ALA ILE ILE LEU ALA ALA GLY LYS GLY SEQRES 2 A 459 THR ARG MET LYS SER ASP LEU PRO LYS VAL LEU HIS LYS SEQRES 3 A 459 VAL ALA GLY ILE SER MET LEU GLU HIS VAL PHE ARG SER SEQRES 4 A 459 VAL GLY ALA ILE GLN PRO GLU LYS THR VAL THR VAL VAL SEQRES 5 A 459 GLY HIS LYS ALA GLU LEU VAL GLU GLU VAL LEU ALA GLY SEQRES 6 A 459 GLN THR GLU PHE VAL THR GLN SER GLU GLN LEU GLY THR SEQRES 7 A 459 GLY HIS ALA VAL MET MET THR GLU PRO ILE LEU GLU GLY SEQRES 8 A 459 LEU SER GLY HIS THR LEU VAL ILE ALA GLY ASP THR PRO SEQRES 9 A 459 LEU ILE THR GLY GLU SER LEU LYS ASN LEU ILE ASP PHE SEQRES 10 A 459 HIS ILE ASN HIS LYS ASN VAL ALA THR ILE LEU THR ALA SEQRES 11 A 459 GLU THR ASP ASN PRO PHE GLY TYR GLY ARG ILE VAL ARG SEQRES 12 A 459 ASN ASP ASN ALA GLU VAL LEU ARG ILE VAL GLU GLN LYS SEQRES 13 A 459 ASP ALA THR ASP PHE GLU LYS GLN ILE LYS GLU ILE ASN SEQRES 14 A 459 THR GLY THR TYR VAL PHE ASP ASN GLU ARG LEU PHE GLU SEQRES 15 A 459 ALA LEU LYS ASN ILE ASN THR ASN ASN ALA GLN GLY GLU SEQRES 16 A 459 TYR TYR ILE THR ASP VAL ILE GLY ILE PHE ARG GLU THR SEQRES 17 A 459 GLY GLU LYS VAL GLY ALA TYR THR LEU LYS ASP PHE ASP SEQRES 18 A 459 GLU SER LEU GLY VAL ASN ASP ARG VAL ALA LEU ALA THR SEQRES 19 A 459 ALA GLU SER VAL MET ARG ARG ARG ILE ASN HIS LYS HIS SEQRES 20 A 459 MET VAL ASN GLY VAL SER PHE VAL ASN PRO GLU ALA THR SEQRES 21 A 459 TYR ILE ASP ILE ASP VAL GLU ILE ALA SER GLU VAL GLN SEQRES 22 A 459 ILE GLU ALA ASN VAL THR LEU LYS GLY GLN THR LYS ILE SEQRES 23 A 459 GLY ALA GLU THR VAL LEU THR ASN GLY THR TYR VAL VAL SEQRES 24 A 459 ASP SER THR ILE GLY ALA GLY ALA VAL ILE THR ASN SER SEQRES 25 A 459 MET ILE GLU GLU SER SER VAL ALA ASP GLY VAL ILE VAL SEQRES 26 A 459 GLY PRO TYR ALA HIS ILE ARG PRO ASN SER SER LEU GLY SEQRES 27 A 459 ALA GLN VAL HIS ILE GLY ASN PHE VAL GLU VAL LYS GLY SEQRES 28 A 459 SER SER ILE GLY GLU ASN THR LYS ALA GLY HIS LEU THR SEQRES 29 A 459 TYR ILE GLY ASN CYS GLU VAL GLY SER ASN VAL ASN PHE SEQRES 30 A 459 GLY ALA GLY THR ILE THR VAL ASN TYR ASP GLY LYS ASN SEQRES 31 A 459 LYS TYR LYS THR VAL ILE GLY ASN ASN VAL PHE VAL GLY SEQRES 32 A 459 SER ASN SER THR ILE ILE ALA PRO VAL GLU LEU GLY ASP SEQRES 33 A 459 ASN SER LEU VAL GLY ALA GLY SER THR ILE THR LYS ASP SEQRES 34 A 459 VAL PRO ALA ASP ALA ILE ALA ILE GLY ARG GLY ARG GLN SEQRES 35 A 459 ILE ASN LYS ASP GLU TYR ALA THR ARG LEU PRO HIS HIS SEQRES 36 A 459 PRO LYS ASN GLN HET MG A 460 1 HET NA A 461 1 HET UD1 A 500 39 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 2 MG MG 2+ FORMUL 3 NA NA 1+ FORMUL 4 UD1 C17 H27 N3 O17 P2 FORMUL 5 HOH *482(H2 O) HELIX 1 1 GLY A 13 LYS A 17 5 5 HELIX 2 2 PRO A 21 LEU A 24 5 4 HELIX 3 3 MET A 32 GLY A 41 1 10 HELIX 4 4 ALA A 42 GLN A 44 5 3 HELIX 5 5 LYS A 55 LEU A 63 1 9 HELIX 6 6 GLY A 77 MET A 84 1 8 HELIX 7 7 THR A 85 GLU A 90 1 6 HELIX 8 8 THR A 107 HIS A 121 1 15 HELIX 9 9 GLU A 154 ALA A 158 5 5 HELIX 10 10 THR A 159 GLN A 164 1 6 HELIX 11 11 ASN A 177 LYS A 185 1 9 HELIX 12 12 TYR A 197 THR A 199 5 3 HELIX 13 13 ASP A 200 THR A 208 1 9 HELIX 14 14 ASP A 219 LEU A 224 5 6 HELIX 15 15 ASP A 228 ASN A 250 1 23 HELIX 16 16 ASN A 256 THR A 260 5 5 SHEET 1 A 7 GLU A 68 THR A 71 0 SHEET 2 A 7 LYS A 47 VAL A 52 1 O THR A 48 N GLU A 68 SHEET 3 A 7 ASN A 3 LEU A 8 1 O ASN A 3 N LYS A 47 SHEET 4 A 7 HIS A 95 ALA A 100 1 O HIS A 95 N PHE A 4 SHEET 5 A 7 GLU A 167 ASP A 176 -1 O TYR A 173 N VAL A 98 SHEET 6 A 7 ALA A 125 GLU A 131 -1 N THR A 126 O VAL A 174 SHEET 7 A 7 VAL A 212 THR A 216 1 N GLY A 213 O ALA A 125 SHEET 1 B 2 LYS A 26 VAL A 27 0 SHEET 2 B 2 ILE A 30 SER A 31 -1 O ILE A 30 N VAL A 27 SHEET 1 C 2 ARG A 140 ARG A 143 0 SHEET 2 C 2 VAL A 149 VAL A 153 -1 N LEU A 150 O VAL A 142 SHEET 1 D11 ILE A 435 ALA A 436 0 SHEET 2 D11 LEU A 419 VAL A 420 1 O LEU A 419 N ALA A 436 SHEET 3 D11 PHE A 401 VAL A 402 1 O PHE A 401 N VAL A 420 SHEET 4 D11 ASN A 376 PHE A 377 1 O ASN A 376 N VAL A 402 SHEET 5 D11 LYS A 359 GLY A 367 1 O LYS A 359 N PHE A 377 SHEET 6 D11 HIS A 342 LYS A 350 1 O HIS A 342 N ALA A 360 SHEET 7 D11 ILE A 324 VAL A 325 1 O ILE A 324 N ILE A 343 SHEET 8 D11 VAL A 308 ILE A 309 1 O VAL A 308 N VAL A 325 SHEET 9 D11 VAL A 291 LEU A 292 1 O VAL A 291 N ILE A 309 SHEET 10 D11 GLN A 273 ILE A 274 1 O GLN A 273 N LEU A 292 SHEET 11 D11 SER A 253 PHE A 254 1 O SER A 253 N ILE A 274 SHEET 1 E11 ILE A 435 ALA A 436 0 SHEET 2 E11 LEU A 419 VAL A 420 1 O LEU A 419 N ALA A 436 SHEET 3 E11 PHE A 401 VAL A 402 1 O PHE A 401 N VAL A 420 SHEET 4 E11 ASN A 376 PHE A 377 1 O ASN A 376 N VAL A 402 SHEET 5 E11 LYS A 359 GLY A 367 1 O LYS A 359 N PHE A 377 SHEET 6 E11 HIS A 342 LYS A 350 1 O HIS A 342 N ALA A 360 SHEET 7 E11 HIS A 330 ILE A 331 1 N HIS A 330 O VAL A 347 SHEET 8 E11 MET A 313 GLU A 315 1 O MET A 313 N ILE A 331 SHEET 9 E11 TYR A 297 VAL A 299 1 O TYR A 297 N ILE A 314 SHEET 10 E11 THR A 279 LYS A 281 1 O THR A 279 N VAL A 298 SHEET 11 E11 TYR A 261 ILE A 262 1 O TYR A 261 N LEU A 280 SHEET 1 F 9 GLU A 267 ILE A 268 0 SHEET 2 F 9 LYS A 285 ILE A 286 1 N ILE A 286 O GLU A 267 SHEET 3 F 9 THR A 302 ILE A 303 1 N ILE A 303 O LYS A 285 SHEET 4 F 9 SER A 318 VAL A 319 1 N VAL A 319 O THR A 302 SHEET 5 F 9 SER A 336 LEU A 337 1 N LEU A 337 O SER A 318 SHEET 6 F 9 SER A 353 ILE A 354 1 N ILE A 354 O SER A 336 SHEET 7 F 9 CYS A 369 VAL A 371 1 O CYS A 369 N SER A 353 SHEET 8 F 9 THR A 394 ILE A 396 1 O THR A 394 N GLU A 370 SHEET 9 F 9 GLU A 413 LEU A 414 1 N LEU A 414 O VAL A 395 SHEET 1 G 3 ILE A 382 VAL A 384 0 SHEET 2 G 3 THR A 407 ILE A 409 1 O ILE A 408 N VAL A 384 SHEET 3 G 3 THR A 425 ILE A 426 1 N ILE A 426 O THR A 407 LINK MG MG A 460 O2B UD1 A 500 1555 1555 2.03 LINK MG MG A 460 OD2 ASP A 102 1555 1555 2.11 LINK MG MG A 460 O1A UD1 A 500 1555 1555 2.07 LINK MG MG A 460 O HOH A 512 1555 1555 2.06 LINK MG MG A 460 O HOH A 540 1555 1555 2.21 LINK MG MG A 460 OD1 ASN A 227 1555 1555 2.18 LINK NA NA A 461 OD1 ASN A 405 1555 1555 2.23 LINK NA NA A 461 O HOH A 504 1555 1555 2.14 LINK NA NA A 461 OD1 ASN A 405 1555 3665 2.23 LINK NA NA A 461 O HOH A 504 1555 3665 2.14 LINK NA NA A 461 O HOH A 504 1555 2655 2.14 LINK NA NA A 461 OD1 ASN A 405 1555 2655 2.23 CISPEP 1 GLY A 326 PRO A 327 0 -0.09 CISPEP 2 ALA A 410 PRO A 411 0 -0.13 SITE 1 AC1 6 LYS A 22 ASP A 102 ASN A 227 UD1 A 500 SITE 2 AC1 6 HOH A 512 HOH A 540 SITE 1 AC2 2 ASN A 405 HOH A 504 SITE 1 AC3 32 LEU A 8 ALA A 10 GLY A 11 LYS A 22 SITE 2 AC3 32 GLN A 72 GLN A 75 LEU A 76 GLY A 77 SITE 3 AC3 32 THR A 78 GLY A 101 ASP A 102 TYR A 138 SITE 4 AC3 32 GLY A 139 GLU A 154 ASN A 169 THR A 170 SITE 5 AC3 32 TYR A 197 ILE A 198 THR A 199 GLY A 225 SITE 6 AC3 32 ASN A 227 MG A 460 HOH A 512 HOH A 513 SITE 7 AC3 32 HOH A 540 HOH A 544 HOH A 560 HOH A 562 SITE 8 AC3 32 HOH A 630 HOH A 752 HOH A 824 HOH A 864 CRYST1 93.660 93.660 275.900 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010677 0.006164 0.000000 0.00000 SCALE2 0.000000 0.012329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003625 0.00000