HEADER IMMUNE SYSTEM 23-NOV-00 1G9E TITLE SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE TITLE 2 HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: H14; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS BETA BARREL, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.-G.RENISIO,J.PEREZ,M.CZISCH,M.GUENNEUGUES,O.BORNET,L.FRENKEN, AUTHOR 2 C.CAMBILLAU,H.DARBON REVDAT 3 23-FEB-22 1G9E 1 REMARK REVDAT 2 24-FEB-09 1G9E 1 VERSN REVDAT 1 23-OCT-02 1G9E 0 JRNL AUTH J.-G.RENISIO,J.PEREZ,M.CZISCH,M.GUENNEUGUES,O.BORNET, JRNL AUTH 2 L.FRENKEN,C.CAMBILLAU,H.DARBON JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF AN ANTIGEN-FREE JRNL TITL 2 HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA JRNL REF PROTEINS V. 47 546 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 12001233 JRNL DOI 10.1002/PROT.10096.ABS REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR 2.6, CNS 1.0 REMARK 3 AUTHORS : BRUKER (UXNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1295 RESTRAINTS, 1181 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 57 DIHEDRAL ANGLE RESTRAINTS, 51 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS AND 6 FROM THE DISULFIDE BRIDGE. REMARK 4 REMARK 4 1G9E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012397. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM 15N H14; 10MM DEUTERATED NA REMARK 210 ACETATE PH4.6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 2.6, XEASY 1.3.13, DIANA REMARK 210 2.8 REMARK 210 METHOD USED : DISTANCE GEOMETRY, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 12 113.29 -162.29 REMARK 500 1 ARG A 27 107.83 -169.99 REMARK 500 1 THR A 28 120.37 -170.10 REMARK 500 1 SER A 30 -81.51 -110.16 REMARK 500 1 VAL A 48 -67.09 -126.90 REMARK 500 1 ASP A 54 -79.50 -177.48 REMARK 500 1 SER A 55 64.95 169.88 REMARK 500 1 ALA A 56 -75.98 -129.36 REMARK 500 1 ARG A 57 -164.22 176.39 REMARK 500 1 SER A 62 37.19 -79.48 REMARK 500 1 VAL A 64 21.63 -156.82 REMARK 500 1 ALA A 75 -47.99 -134.46 REMARK 500 1 LYS A 76 -64.36 -130.07 REMARK 500 1 LYS A 77 70.87 167.66 REMARK 500 1 SER A 85 48.96 34.96 REMARK 500 1 PRO A 88 1.59 -69.71 REMARK 500 1 THR A 91 101.55 -51.79 REMARK 500 1 VAL A 115 -168.84 -121.62 REMARK 500 1 SER A 116 -87.42 -165.34 REMARK 500 2 TYR A 32 90.35 -69.42 REMARK 500 2 VAL A 48 -67.80 -130.00 REMARK 500 2 TRP A 53 -167.33 -105.86 REMARK 500 2 ASP A 54 26.27 44.19 REMARK 500 2 SER A 55 78.50 41.88 REMARK 500 2 ALA A 56 -72.87 -113.61 REMARK 500 2 SER A 62 33.66 -82.33 REMARK 500 2 VAL A 64 19.70 -148.46 REMARK 500 2 ARG A 65 79.25 -62.49 REMARK 500 2 LYS A 76 -57.53 -134.16 REMARK 500 2 LYS A 77 70.96 173.42 REMARK 500 2 SER A 85 40.75 38.99 REMARK 500 2 THR A 91 107.70 -53.18 REMARK 500 2 ALA A 92 -177.65 -170.61 REMARK 500 2 GLU A 100 108.72 -173.75 REMARK 500 2 GLN A 109 -69.74 -140.36 REMARK 500 2 VAL A 115 -158.55 -108.31 REMARK 500 2 SER A 116 -58.40 78.92 REMARK 500 3 ALA A 14 154.26 -46.54 REMARK 500 3 VAL A 48 -66.64 -129.19 REMARK 500 3 SER A 55 -102.34 -87.20 REMARK 500 3 ALA A 56 -35.05 177.25 REMARK 500 3 SER A 63 -10.23 84.38 REMARK 500 3 VAL A 64 16.67 -154.20 REMARK 500 3 LYS A 76 29.09 -140.25 REMARK 500 3 SER A 85 43.32 37.21 REMARK 500 3 THR A 91 107.79 -53.97 REMARK 500 3 GLU A 100 113.69 -162.49 REMARK 500 3 GLN A 109 -63.23 -98.81 REMARK 500 3 SER A 116 -54.53 -150.76 REMARK 500 4 THR A 31 32.02 71.69 REMARK 500 REMARK 500 THIS ENTRY HAS 306 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1G9E A 1 117 GB 4165492 CAA15406 1 117 SEQRES 1 A 117 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 117 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 117 ARG THR GLY SER THR TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 A 117 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ALA ILE ASN SEQRES 5 A 117 TRP ASP SER ALA ARG THR TYR TYR ALA SER SER VAL ARG SEQRES 6 A 117 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 A 117 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 117 ALA VAL TYR THR CYS GLY ALA GLY GLU GLY GLY THR TRP SEQRES 9 A 117 ASP SER TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SHEET 1 A 4 GLN A 3 GLN A 5 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O ALA A 23 N GLN A 5 SHEET 3 A 4 THR A 78 MET A 83 -1 N VAL A 79 O CYS A 22 SHEET 4 A 4 PHE A 68 ARG A 72 -1 N THR A 69 O GLN A 82 SHEET 1 B 5 THR A 58 TYR A 60 0 SHEET 2 B 5 ARG A 45 ASN A 52 -1 O ALA A 50 N TYR A 59 SHEET 3 B 5 ASP A 33 GLN A 39 -1 O MET A 34 N ILE A 51 SHEET 4 B 5 CYS A 96 GLU A 100 -1 N GLY A 97 O GLY A 35 SHEET 5 B 5 THR A 103 TRP A 107 -1 N THR A 103 O GLU A 100 SHEET 1 C 2 ALA A 92 TYR A 94 0 SHEET 2 C 2 THR A 111 VAL A 113 -1 O THR A 111 N TYR A 94 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1