HEADER SUGAR BINDING PROTEIN 23-NOV-00 1G9F TITLE CRYSTAL STRUCTURE OF THE SOYBEAN AGGLUTININ IN A COMPLEX WITH A TITLE 2 BIANTENNARY BLOOD GROUP ANTIGEN ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGGLUTININ, SBA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 ORGAN: SEED KEYWDS JELLY-ROLL FOLD, LEGUME LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.BUTS,T.W.HAMELRYCK,M.-H.DAO-THI,R.LORIS,L.WYNS,M.E.ETZLER REVDAT 7 03-APR-24 1G9F 1 HETSYN REVDAT 6 29-JUL-20 1G9F 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 04-OCT-17 1G9F 1 REMARK REVDAT 4 13-JUL-11 1G9F 1 VERSN REVDAT 3 24-FEB-09 1G9F 1 VERSN REVDAT 2 01-APR-03 1G9F 1 JRNL REVDAT 1 13-JUN-01 1G9F 0 JRNL AUTH L.BUTS,M.H.DAO-THI,R.LORIS,L.WYNS,M.ETZLER,T.HAMELRYCK JRNL TITL WEAK PROTEIN-PROTEIN INTERACTIONS IN LECTINS: THE CRYSTAL JRNL TITL 2 STRUCTURE OF A VEGETATIVE LECTIN FROM THE LEGUME DOLICHOS JRNL TITL 3 BIFLORUS. JRNL REF J.MOL.BIOL. V. 309 193 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11491289 JRNL DOI 10.1006/JMBI.2001.4639 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.R.OLSEN,A.DESSEN,D.GUPTA,S.SABESAN,J.C.SACCHETTINI, REMARK 1 AUTH 2 C.F.BREWER REMARK 1 TITL X-RAY CRYSTALLOGRAPHIC STUDIES OF UNIQUE CROSS-LINKED REMARK 1 TITL 2 LATTICES BETWEEN FOUR ISOMERIC BIANTENNARY OLIGOSACCHARIDES REMARK 1 TITL 3 AND SOYBEAN AGGLUTININ REMARK 1 REF BIOCHEMISTRY V. 36 15073 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI971828+ REMARK 1 REFERENCE 2 REMARK 1 AUTH A.DESSEN,D.GUPTA,S.SABESAN,C.F.BREWER,J.C.SACCHETTINI REMARK 1 TITL X-RAY CRYSTAL STRUCTURE OF THE SOYBEAN AGGLUTININ REMARK 1 TITL 2 CROSS-LINKED WITH A BIANTENNARY ANALOG OF THE BLOOD GROUP I REMARK 1 TITL 3 CARBOHYDRATE ANTIGEN REMARK 1 REF BIOCHEMISTRY V. 34 4933 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1969940.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 10942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1793 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.070 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 43.72 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-97 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: SOYBEAN AGGLUTININ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: REMARK 280 PROTEIN,CARBOHYDRATE,HEPES,CACL(2),MNCL(2),NACL, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 61.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.28000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.64000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.32000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.92000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.92000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.32000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.64000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 61.32000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.28000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.32000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.28000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.32000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.92000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 22.64000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.32000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.64000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.92000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.32000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.32000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 45.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: - MONOMER B: REMARK 300 SYMMETRY -X,-Y,Z TRANSLATION (245.28,0,0) - MONOMER C: SYMMETRY -Y,- REMARK 300 X,-Z TRANSLATION (122.64,122.64,90,56) - MONOMER D: SYMMETRY Y,X,-Z REMARK 300 TRANSLATION (122.64,122.64,90.56) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 122.64000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -61.32000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 22.64000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 61.32000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 113.20000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 122.64000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 122.64000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 90.56000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 39 REMARK 465 ASN A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 235 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 ASN A 238 REMARK 465 ILE A 239 REMARK 465 ASP A 240 REMARK 465 PRO A 241 REMARK 465 ALA A 252 REMARK 465 ILE A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CE NZ REMARK 470 LYS A 14 O CD CE NZ REMARK 470 LYS A 31 O CE NZ REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 63 O CD OE1 OE2 REMARK 470 THR A 64 OG1 CG2 REMARK 470 LYS A 84 O CG CD CE NZ REMARK 470 ARG A 85 O CG CD NE CZ NH1 NH2 REMARK 470 ARG A 129 O NE CZ NH1 NH2 REMARK 470 LYS A 197 O CE NZ REMARK 470 LEU A 242 CB CG CD1 CD2 REMARK 470 ASP A 243 CB CG OD1 OD2 REMARK 470 LEU A 244 CB CG CD1 CD2 REMARK 470 THR A 245 CB OG1 CG2 REMARK 470 LEU A 249 CB CG CD1 CD2 REMARK 470 HIS A 250 CB CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 251 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 16 2.39 -68.09 REMARK 500 GLU A 63 -84.44 -61.96 REMARK 500 THR A 83 4.18 -62.16 REMARK 500 ALA A 87 141.29 176.88 REMARK 500 GLN A 102 -148.30 -110.95 REMARK 500 ALA A 105 -131.33 53.82 REMARK 500 LEU A 108 21.79 49.69 REMARK 500 ASP A 118 -163.96 -72.86 REMARK 500 ASN A 136 147.14 77.58 REMARK 500 ASN A 159 -4.00 67.70 REMARK 500 ASP A 243 95.36 -66.06 REMARK 500 HIS A 250 -75.74 -99.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 254 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 ASP A 126 OD2 95.8 REMARK 620 3 ASP A 133 OD1 163.5 100.3 REMARK 620 4 HIS A 138 NE2 78.0 98.6 102.4 REMARK 620 5 HOH A 264 O 91.5 85.6 86.8 169.0 REMARK 620 6 HOH A 265 O 80.5 173.3 83.1 86.2 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 255 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 126 OD1 REMARK 620 2 ASP A 126 OD2 55.1 REMARK 620 3 PHE A 128 O 70.6 116.7 REMARK 620 4 ASN A 130 OD1 140.5 164.0 78.0 REMARK 620 5 ASP A 133 OD2 118.0 95.6 82.1 79.5 REMARK 620 6 HOH A 266 O 125.6 78.1 163.8 86.6 89.9 REMARK 620 7 HOH A 267 O 73.0 106.7 83.4 80.3 157.2 99.4 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2SBA RELATED DB: PDB REMARK 900 ISOMERIC LIGAND REMARK 900 RELATED ID: 1SBD RELATED DB: PDB REMARK 900 ISOMERIC LIGAND REMARK 900 RELATED ID: 1SBF RELATED DB: PDB REMARK 900 ISOMERIC LIGAND DBREF 1G9F A 1 253 UNP P05046 LEC_SOYBN 33 285 SEQRES 1 A 253 ALA GLU THR VAL SER PHE SER TRP ASN LYS PHE VAL PRO SEQRES 2 A 253 LYS GLN PRO ASN MET ILE LEU GLN GLY ASP ALA ILE VAL SEQRES 3 A 253 THR SER SER GLY LYS LEU GLN LEU ASN LYS VAL ASP GLU SEQRES 4 A 253 ASN GLY THR PRO LYS PRO SER SER LEU GLY ARG ALA LEU SEQRES 5 A 253 TYR SER THR PRO ILE HIS ILE TRP ASP LYS GLU THR GLY SEQRES 6 A 253 SER VAL ALA SER PHE ALA ALA SER PHE ASN PHE THR PHE SEQRES 7 A 253 TYR ALA PRO ASP THR LYS ARG LEU ALA ASP GLY LEU ALA SEQRES 8 A 253 PHE PHE LEU ALA PRO ILE ASP THR LYS PRO GLN THR HIS SEQRES 9 A 253 ALA GLY TYR LEU GLY LEU PHE ASN GLU ASN GLU SER GLY SEQRES 10 A 253 ASP GLN VAL VAL ALA VAL GLU PHE ASP THR PHE ARG ASN SEQRES 11 A 253 SER TRP ASP PRO PRO ASN PRO HIS ILE GLY ILE ASN VAL SEQRES 12 A 253 ASN SER ILE ARG SER ILE LYS THR THR SER TRP ASP LEU SEQRES 13 A 253 ALA ASN ASN LYS VAL ALA LYS VAL LEU ILE THR TYR ASP SEQRES 14 A 253 ALA SER THR SER LEU LEU VAL ALA SER LEU VAL TYR PRO SEQRES 15 A 253 SER GLN ARG THR SER ASN ILE LEU SER ASP VAL VAL ASP SEQRES 16 A 253 LEU LYS THR SER LEU PRO GLU TRP VAL ARG ILE GLY PHE SEQRES 17 A 253 SER ALA ALA THR GLY LEU ASP ILE PRO GLY GLU SER HIS SEQRES 18 A 253 ASP VAL LEU SER TRP SER PHE ALA SER ASN LEU PRO HIS SEQRES 19 A 253 ALA SER SER ASN ILE ASP PRO LEU ASP LEU THR SER PHE SEQRES 20 A 253 VAL LEU HIS GLU ALA ILE MODRES 1G9F ASN A 75 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET GAL C 1 12 HET NAG C 2 14 HET GAL C 3 11 HET NAG C 4 14 HET GAL C 5 11 HET MN A 254 1 HET CA A 255 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 GAL 3(C6 H12 O6) FORMUL 4 MN MN 2+ FORMUL 5 CA CA 2+ FORMUL 6 HOH *9(H2 O) HELIX 1 1 HIS A 104 LEU A 108 5 5 HELIX 2 2 LEU A 244 HIS A 250 1 7 SHEET 1 A 6 GLU A 2 TRP A 8 0 SHEET 2 A 6 SER A 220 LEU A 232 -1 O TRP A 226 N TRP A 8 SHEET 3 A 6 SER A 69 TYR A 79 -1 O SER A 69 N ASN A 231 SHEET 4 A 6 ALA A 162 ASP A 169 -1 N ALA A 162 O PHE A 76 SHEET 5 A 6 LEU A 174 TYR A 181 -1 O LEU A 174 N ASP A 169 SHEET 6 A 6 THR A 186 VAL A 193 -1 O THR A 186 N TYR A 181 SHEET 1 B 7 LYS A 150 SER A 153 0 SHEET 2 B 7 HIS A 138 VAL A 143 -1 N ILE A 139 O THR A 152 SHEET 3 B 7 VAL A 121 ASP A 126 -1 O ALA A 122 N ASN A 142 SHEET 4 B 7 ASP A 88 PRO A 96 -1 O LEU A 90 N PHE A 125 SHEET 5 B 7 TRP A 203 THR A 212 -1 N ARG A 205 O ALA A 95 SHEET 6 B 7 LEU A 48 TYR A 53 -1 O GLY A 49 N ALA A 210 SHEET 7 B 7 MET A 18 GLY A 22 -1 N ILE A 19 O LEU A 52 SHEET 1 C 6 LYS A 150 SER A 153 0 SHEET 2 C 6 HIS A 138 VAL A 143 -1 N ILE A 139 O THR A 152 SHEET 3 C 6 VAL A 121 ASP A 126 -1 O ALA A 122 N ASN A 142 SHEET 4 C 6 ASP A 88 PRO A 96 -1 O LEU A 90 N PHE A 125 SHEET 5 C 6 TRP A 203 THR A 212 -1 N ARG A 205 O ALA A 95 SHEET 6 C 6 ILE A 57 HIS A 58 -1 N ILE A 57 O VAL A 204 LINK ND2 ASN A 75 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O2 GAL C 1 C1 NAG C 2 1555 1555 1.39 LINK O3 GAL C 1 C1 NAG C 4 1555 1555 1.39 LINK O4 NAG C 2 C1 GAL C 3 1555 1555 1.39 LINK O4 NAG C 4 C1 GAL C 5 1555 1555 1.39 LINK OE2 GLU A 124 MN MN A 254 1555 1555 2.25 LINK OD2 ASP A 126 MN MN A 254 1555 1555 2.22 LINK OD1 ASP A 126 CA CA A 255 1555 1555 2.48 LINK OD2 ASP A 126 CA CA A 255 1555 1555 2.26 LINK O PHE A 128 CA CA A 255 1555 1555 2.40 LINK OD1 ASN A 130 CA CA A 255 1555 1555 2.35 LINK OD1 ASP A 133 MN MN A 254 1555 1555 2.19 LINK OD2 ASP A 133 CA CA A 255 1555 1555 2.30 LINK NE2 HIS A 138 MN MN A 254 1555 1555 2.39 LINK MN MN A 254 O HOH A 264 1555 1555 2.08 LINK MN MN A 254 O HOH A 265 1555 1555 1.99 LINK CA CA A 255 O HOH A 266 1555 1555 2.34 LINK CA CA A 255 O HOH A 267 1555 1555 2.09 CISPEP 1 ALA A 87 ASP A 88 0 -0.85 CRYST1 122.640 122.640 90.560 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011042 0.00000