data_1GAT # _entry.id 1GAT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1GAT WWPDB D_1000173485 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1GAU _pdbx_database_related.details 'ENSEMBLE OF 30 STRUCTURES' _pdbx_database_related.content_type ensemble # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GAT _pdbx_database_status.recvd_initial_deposition_date 1993-06-28 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Omichinski, J.G.' 2 'Gronenborn, A.M.' 3 # _citation.id primary _citation.title 'NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1.' _citation.journal_abbrev Science _citation.journal_volume 261 _citation.page_first 438 _citation.page_last 446 _citation.year 1993 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8332909 _citation.pdbx_database_id_DOI 10.1021/bi00131a004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Omichinski, J.G.' 1 primary 'Clore, G.M.' 2 primary 'Schaad, O.' 3 primary 'Felsenfeld, G.' 4 primary 'Trainor, C.' 5 primary 'Appella, E.' 6 primary 'Stahl, S.J.' 7 primary 'Gronenborn, A.M.' 8 # _cell.entry_id 1GAT _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GAT _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*AP*TP*AP*AP*AP*C)3') ; 2443.657 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*GP*TP*TP*TP*AP*TP*CP*T)-3') ; 2407.601 1 ? ? ? ? 3 polymer man 'ERYTHROID TRANSCRIPTION FACTOR GATA-1' 6798.865 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DA)(DT)(DA)(DA)(DA)(DC)' AGATAAAC B ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DT)(DT)(DA)(DT)(DC)(DT)' GTTTATCT C ? 3 'polypeptide(L)' no no KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSS KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSS A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DA n 1 8 DC n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DT n 3 1 LYS n 3 2 ARG n 3 3 ALA n 3 4 GLY n 3 5 THR n 3 6 VAL n 3 7 CYS n 3 8 SER n 3 9 ASN n 3 10 CYS n 3 11 GLN n 3 12 THR n 3 13 SER n 3 14 THR n 3 15 THR n 3 16 THR n 3 17 LEU n 3 18 TRP n 3 19 ARG n 3 20 ARG n 3 21 SER n 3 22 PRO n 3 23 MET n 3 24 GLY n 3 25 ASP n 3 26 PRO n 3 27 VAL n 3 28 CYS n 3 29 ASN n 3 30 ALA n 3 31 CYS n 3 32 GLY n 3 33 LEU n 3 34 TYR n 3 35 TYR n 3 36 LYS n 3 37 LEU n 3 38 HIS n 3 39 GLN n 3 40 VAL n 3 41 ASN n 3 42 ARG n 3 43 PRO n 3 44 LEU n 3 45 THR n 3 46 MET n 3 47 ARG n 3 48 LYS n 3 49 ASP n 3 50 GLY n 3 51 ILE n 3 52 GLN n 3 53 THR n 3 54 ARG n 3 55 ASN n 3 56 ARG n 3 57 LYS n 3 58 VAL n 3 59 SER n 3 60 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name chicken _entity_src_gen.gene_src_genus Gallus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Gallus gallus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP GATA1_CHICK P17678 3 158 ? ? 2 PDB 1GAT 1GAT 1 ? ? ? 3 PDB 1GAT 1GAT 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GAT A 1 ? 60 ? P17678 158 ? 217 ? 1 60 2 2 1GAT B 1 ? 8 ? 1GAT 106 ? 113 ? 106 113 3 3 1GAT C 1 ? 8 ? 1GAT 120 ? 127 ? 120 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _pdbx_nmr_refine.entry_id 1GAT _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;DETAILS OF THE STRUCTURE DETERMINATION AND ALL STRUCTURAL STATISTICS ARE GIVEN IN THE REFERENCE CITED ON THE *JRNL* RECORDS ABOVE (I.E. AGREEMENT WITH EXPERIMENTAL RESTRAINTS, DEVIATIONS FROM IDEALITY FOR BOND LENGTHS, ANGLES, PLANES AND CHIRALITY, NON-BONDED CONTACTS, ATOMIC RMS DIFFERENCES BETWEEN THE CALCULATED STRUCTURES). THE STRUCTURES ARE BASED ON A TOTAL OF 1740 EXPERIMENTAL NMR RESTRAINTS COMPRISING: 1444 INTERPROTON DISTANCE RESTRAINTS DERIVED FROM NOE MEASUREMENTS; AND 296 TORSION ANGLE RESTRAINTS. THE NOE RESTRAINTS ARE SUBDIVIDED AS FOLLOWS: (A) WITHIN THE PROTEIN: 242 INTERRESIDUE SEQUENTIAL (|I-J|=1); 161 INTERRESIDUE SHORT RANGE (1(LESS THAN)|I-J|(LESS THAN)=5); 182 INTERRESIDUE LONG RANGE (|I-J|(GREATER THAN)5); AND 334 INTRARESIDUE. (B) WITHIN THE DNA: 157 INTRARESIDUE; 180 SEQUENTIAL INTRASTRAND; 34 INTERSTRAND; AND 37 H-BONDS (C) BETWEEN PROTEIN AND DNA: 117. THE TORSION ANGLE RESTRAINTS ARE SUBDIVIDED AS FOLLOWS: 144 ANGLES FOR THE PROTEIN (58 PHI, 56 PSI, 26 CHI1 AND 4 CHI2) AND 152 FOR THE DNA. THE TORSION ANGLE RESTRAINTS FOR THE DNA COMPRISE LOOSE RESTRAINTS ON THE BACKBONE TORSION ANGLES ALPHA, BETA, GAMMA, EPSILON AND ZETA TO PREVENT PROBLEMS ASSOCIATED WITH LOCAL MIRROR IMAGES. THE METHOD USED TO DETERMINE THE STRUCTURES IS THE HYBRID METRIC MATRIX DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD [M.NILGES, G.M.CLORE, AND A.M.GRONENBORN FEBS LETT. 229, 317-324 (1988)]. A TOTAL OF 30 STRUCTURES WERE CALCULATED. THE ATOMIC RMS DISTRIBUTION ABOUT THE MEAN COORDINATE POSITIONS FOR RESIDUES 2 - 59 OF THE PROTEIN AND BASE PAIRS 6 - 13 OF THE DNA IS 0.70 (+/-0.13) A FOR THE BACKBONE ATOMS OF THE PROTEIN AND ALL ATOMS OF THE DNA, AND 1.13 (+/-0.08) A FOR ALL ATOMS OF THE PROTEIN AND DNA. THE N-TERMINUS (RESIDUE 1) AND C-TERMINUS (RESIDUES 60 - 66) ARE DISORDERED. THE ORIENTATION OF THE FIRST 5 AND LAST 3 BASE PAIRS OF THE 16MER DNA DUPLEX, WHICH ARE NOT IN CONTACT WITH THE DNA, IS POORLY DEFINED WITH RESPECT TO THE CORE OF THE COMPLEX. CONSEQUENTLY, ONLY THE COORDINATES OF THE COMPLEX PROPER HAVE BEEN DEPOSITED: I.E. RESIDUES 1 - 60 OF THE PROTEIN AND BASE PAIRS 6 - 13 OF THE DNA. THE COORDINATES OF THE 30 INDIVIDUAL SA STRUCTURES ARE PRESENTED AS MODELS 1 TO 30 IN PROTEIN DATA BANK ENTRY 1GAU. THE QUANTITY IN COLUMNS 61 - 66 OF THESE MODELS HAS NO MEANING. THE COORDINATES OF THE RESTRAINED MINIMIZED STRUCTURE ARE PRESENTED IN THIS ENTRY. THE (SA)R RESTRAINED MINIMIZED MEAN STRUCTURE WAS DERIVED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL SA STRUCTURES (BEST FITTED TO RESIDUES 2 - 59 OF THE PROTEIN AND BASE PAIRS 6 - 13 OF THE DNA), AND SUBJECTING THE RESULTING COORDINATES TO RESTRAINED MINIMIZATION. THE QUANTITY PRESENTED IN COLUMNS 61 - 66 OF THE MEAN STRUCTURE, PRESENTED IN THIS ENTRY, REPRESENTS THE ATOMIC RMS DEVIATIONS OF THE 30 INDIVIDUAL SA STRUCTURES ABOUT THE MEAN STRUCTURE. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1GAT _pdbx_nmr_details.text ;THE COORDINATES OF THE RESTRAINED MINIMIZED STRUCTURE ARE PRESENTED IN THIS ENTRY. THE (SA)R RESTRAINED MINIMIZED MEAN STRUCTURE WAS DERIVED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL SA STRUCTURES (BEST FITTED TO RESIDUES 2 - 59 OF THE PROTEIN AND BASE PAIRS 6 - 13 OF THE DNA), AND SUBJECTING THE RESULTING COORDINATES TO RESTRAINED MINIMIZATION. THE QUANTITY PRESENTED IN COLUMNS 61 - 66 OF THE MEAN STRUCTURE, PRESENTED IN THIS ENTRY, REPRESENTS THE ATOMIC RMS DEVIATIONS OF THE 30 INDIVIDUAL SA STRUCTURES ABOUT THE MEAN STRUCTURE. ; # _pdbx_nmr_ensemble.entry_id 1GAT _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _exptl.entry_id 1GAT _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1GAT _struct.title ;SOLUTION STRUCTURE OF THE SPECIFIC DNA COMPLEX OF THE ZINC CONTAINING DNA BINDING DOMAIN OF THE ERYTHROID TRANSCRIPTION FACTOR GATA-1 BY MULTIDIMENSIONAL NMR ; _struct.pdbx_descriptor 'ERYTHROID TRANSCRIPTION FACTOR GATA-1/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GAT _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'DNA, DOUBLE HELIX, DNA-TRANSCRIPTION FACTOR COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 29 ? GLN C 39 ? ASN A 29 GLN A 39 1 ? 11 HELX_P HELX_P2 2 PRO C 43 ? ARG C 47 ? PRO A 43 ARG A 47 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 C CYS 28 SG ? ? A ZN 67 A CYS 28 1_555 ? ? ? ? ? ? ? 2.323 ? metalc2 metalc ? ? D ZN . ZN ? ? ? 1_555 C CYS 31 SG ? ? A ZN 67 A CYS 31 1_555 ? ? ? ? ? ? ? 2.288 ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 C CYS 7 SG ? ? A ZN 67 A CYS 7 1_555 ? ? ? ? ? ? ? 2.282 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 C CYS 10 SG ? ? A ZN 67 A CYS 10 1_555 ? ? ? ? ? ? ? 2.276 ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 106 C DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 106 C DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 107 C DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 107 C DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 107 C DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DT 8 O2 ? ? B DG 107 C DT 127 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 108 C DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 108 C DT 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 109 C DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 109 C DA 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 110 C DT 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 110 C DT 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 111 C DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 111 C DT 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 112 C DT 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 112 C DT 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 113 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 113 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 113 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP C 18 ? SER C 21 ? TRP A 18 SER A 21 A 2 ASP C 25 ? CYS C 28 ? ASP A 25 CYS A 28 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 21 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 21 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASP _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 25 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 25 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 67' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 7 ? CYS A 7 . ? 1_555 ? 2 AC1 4 CYS C 10 ? CYS A 10 . ? 1_555 ? 3 AC1 4 CYS C 28 ? CYS A 28 . ? 1_555 ? 4 AC1 4 CYS C 31 ? CYS A 31 . ? 1_555 ? # _database_PDB_matrix.entry_id 1GAT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GAT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 106 106 DA A B . n A 1 2 DG 2 107 107 DG G B . n A 1 3 DA 3 108 108 DA A B . n A 1 4 DT 4 109 109 DT T B . n A 1 5 DA 5 110 110 DA A B . n A 1 6 DA 6 111 111 DA A B . n A 1 7 DA 7 112 112 DA A B . n A 1 8 DC 8 113 113 DC C B . n B 2 1 DG 1 120 120 DG G C . n B 2 2 DT 2 121 121 DT T C . n B 2 3 DT 3 122 122 DT T C . n B 2 4 DT 4 123 123 DT T C . n B 2 5 DA 5 124 124 DA A C . n B 2 6 DT 6 125 125 DT T C . n B 2 7 DC 7 126 126 DC C C . n B 2 8 DT 8 127 127 DT T C . n C 3 1 LYS 1 1 1 LYS LYS A . n C 3 2 ARG 2 2 2 ARG ARG A . n C 3 3 ALA 3 3 3 ALA ALA A . n C 3 4 GLY 4 4 4 GLY GLY A . n C 3 5 THR 5 5 5 THR THR A . n C 3 6 VAL 6 6 6 VAL VAL A . n C 3 7 CYS 7 7 7 CYS CYS A . n C 3 8 SER 8 8 8 SER SER A . n C 3 9 ASN 9 9 9 ASN ASN A . n C 3 10 CYS 10 10 10 CYS CYS A . n C 3 11 GLN 11 11 11 GLN GLN A . n C 3 12 THR 12 12 12 THR THR A . n C 3 13 SER 13 13 13 SER SER A . n C 3 14 THR 14 14 14 THR THR A . n C 3 15 THR 15 15 15 THR THR A . n C 3 16 THR 16 16 16 THR THR A . n C 3 17 LEU 17 17 17 LEU LEU A . n C 3 18 TRP 18 18 18 TRP TRP A . n C 3 19 ARG 19 19 19 ARG ARG A . n C 3 20 ARG 20 20 20 ARG ARG A . n C 3 21 SER 21 21 21 SER SER A . n C 3 22 PRO 22 22 22 PRO PRO A . n C 3 23 MET 23 23 23 MET MET A . n C 3 24 GLY 24 24 24 GLY GLY A . n C 3 25 ASP 25 25 25 ASP ASP A . n C 3 26 PRO 26 26 26 PRO PRO A . n C 3 27 VAL 27 27 27 VAL VAL A . n C 3 28 CYS 28 28 28 CYS CYS A . n C 3 29 ASN 29 29 29 ASN ASN A . n C 3 30 ALA 30 30 30 ALA ALA A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 GLY 32 32 32 GLY GLY A . n C 3 33 LEU 33 33 33 LEU LEU A . n C 3 34 TYR 34 34 34 TYR TYR A . n C 3 35 TYR 35 35 35 TYR TYR A . n C 3 36 LYS 36 36 36 LYS LYS A . n C 3 37 LEU 37 37 37 LEU LEU A . n C 3 38 HIS 38 38 38 HIS HIS A . n C 3 39 GLN 39 39 39 GLN GLN A . n C 3 40 VAL 40 40 40 VAL VAL A . n C 3 41 ASN 41 41 41 ASN ASN A . n C 3 42 ARG 42 42 42 ARG ARG A . n C 3 43 PRO 43 43 43 PRO PRO A . n C 3 44 LEU 44 44 44 LEU LEU A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 MET 46 46 46 MET MET A . n C 3 47 ARG 47 47 47 ARG ARG A . n C 3 48 LYS 48 48 48 LYS LYS A . n C 3 49 ASP 49 49 49 ASP ASP A . n C 3 50 GLY 50 50 50 GLY GLY A . n C 3 51 ILE 51 51 51 ILE ILE A . n C 3 52 GLN 52 52 52 GLN GLN A . n C 3 53 THR 53 53 53 THR THR A . n C 3 54 ARG 54 54 54 ARG ARG A . n C 3 55 ASN 55 55 55 ASN ASN A . n C 3 56 ARG 56 56 56 ARG ARG A . n C 3 57 LYS 57 57 57 LYS LYS A . n C 3 58 VAL 58 58 58 VAL VAL A . n C 3 59 SER 59 59 59 SER SER A . n C 3 60 SER 60 60 60 SER SER A . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 67 _pdbx_nonpoly_scheme.auth_seq_num 67 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 31 ? A CYS 31 ? 1_555 108.5 ? 2 SG ? C CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 7 ? A CYS 7 ? 1_555 112.6 ? 3 SG ? C CYS 31 ? A CYS 31 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 7 ? A CYS 7 ? 1_555 108.9 ? 4 SG ? C CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 10 ? A CYS 10 ? 1_555 110.2 ? 5 SG ? C CYS 31 ? A CYS 31 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 10 ? A CYS 10 ? 1_555 109.8 ? 6 SG ? C CYS 7 ? A CYS 7 ? 1_555 ZN ? D ZN . ? A ZN 67 ? 1_555 SG ? C CYS 10 ? A CYS 10 ? 1_555 106.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-10-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-09-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O6 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 107 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H41 _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 DC _pdbx_validate_close_contact.auth_seq_id_2 126 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 106 ? ? "C1'" B DA 106 ? ? N9 B DA 106 ? ? 110.75 108.30 2.45 0.30 N 2 1 C5 B DA 106 ? ? N7 B DA 106 ? ? C8 B DA 106 ? ? 100.02 103.90 -3.88 0.50 N 3 1 N7 B DA 106 ? ? C8 B DA 106 ? ? N9 B DA 106 ? ? 120.34 113.80 6.54 0.50 N 4 1 C8 B DA 106 ? ? N9 B DA 106 ? ? C4 B DA 106 ? ? 102.73 105.80 -3.07 0.40 N 5 1 "O4'" B DG 107 ? ? "C1'" B DG 107 ? ? N9 B DG 107 ? ? 111.88 108.30 3.58 0.30 N 6 1 C5 B DG 107 ? ? N7 B DG 107 ? ? C8 B DG 107 ? ? 100.42 104.30 -3.88 0.50 N 7 1 N7 B DG 107 ? ? C8 B DG 107 ? ? N9 B DG 107 ? ? 119.93 113.10 6.83 0.50 N 8 1 C8 B DG 107 ? ? N9 B DG 107 ? ? C4 B DG 107 ? ? 102.49 106.40 -3.91 0.40 N 9 1 "O4'" B DA 108 ? ? "C1'" B DA 108 ? ? N9 B DA 108 ? ? 110.91 108.30 2.61 0.30 N 10 1 C5 B DA 108 ? ? N7 B DA 108 ? ? C8 B DA 108 ? ? 100.02 103.90 -3.88 0.50 N 11 1 N7 B DA 108 ? ? C8 B DA 108 ? ? N9 B DA 108 ? ? 119.99 113.80 6.19 0.50 N 12 1 C8 B DA 108 ? ? N9 B DA 108 ? ? C4 B DA 108 ? ? 102.65 105.80 -3.15 0.40 N 13 1 "O4'" B DT 109 ? ? "C1'" B DT 109 ? ? N1 B DT 109 ? ? 111.06 108.30 2.76 0.30 N 14 1 "O4'" B DA 110 ? ? "C1'" B DA 110 ? ? N9 B DA 110 ? ? 110.74 108.30 2.44 0.30 N 15 1 C5 B DA 110 ? ? N7 B DA 110 ? ? C8 B DA 110 ? ? 100.24 103.90 -3.66 0.50 N 16 1 N7 B DA 110 ? ? C8 B DA 110 ? ? N9 B DA 110 ? ? 119.92 113.80 6.12 0.50 N 17 1 C8 B DA 110 ? ? N9 B DA 110 ? ? C4 B DA 110 ? ? 102.45 105.80 -3.35 0.40 N 18 1 "O4'" B DA 111 ? ? "C1'" B DA 111 ? ? N9 B DA 111 ? ? 110.67 108.30 2.37 0.30 N 19 1 C5 B DA 111 ? ? N7 B DA 111 ? ? C8 B DA 111 ? ? 100.12 103.90 -3.78 0.50 N 20 1 N7 B DA 111 ? ? C8 B DA 111 ? ? N9 B DA 111 ? ? 120.07 113.80 6.27 0.50 N 21 1 C8 B DA 111 ? ? N9 B DA 111 ? ? C4 B DA 111 ? ? 102.52 105.80 -3.28 0.40 N 22 1 "O4'" B DA 112 ? ? "C1'" B DA 112 ? ? N9 B DA 112 ? ? 111.02 108.30 2.72 0.30 N 23 1 C5 B DA 112 ? ? N7 B DA 112 ? ? C8 B DA 112 ? ? 100.14 103.90 -3.76 0.50 N 24 1 N7 B DA 112 ? ? C8 B DA 112 ? ? N9 B DA 112 ? ? 119.86 113.80 6.06 0.50 N 25 1 C8 B DA 112 ? ? N9 B DA 112 ? ? C4 B DA 112 ? ? 102.52 105.80 -3.28 0.40 N 26 1 "O4'" B DC 113 ? ? "C1'" B DC 113 ? ? N1 B DC 113 ? ? 110.33 108.30 2.03 0.30 N 27 1 "O4'" C DG 120 ? ? "C1'" C DG 120 ? ? N9 C DG 120 ? ? 111.11 108.30 2.81 0.30 N 28 1 C5 C DG 120 ? ? N7 C DG 120 ? ? C8 C DG 120 ? ? 100.34 104.30 -3.96 0.50 N 29 1 N7 C DG 120 ? ? C8 C DG 120 ? ? N9 C DG 120 ? ? 120.20 113.10 7.10 0.50 N 30 1 C8 C DG 120 ? ? N9 C DG 120 ? ? C4 C DG 120 ? ? 102.60 106.40 -3.80 0.40 N 31 1 "O4'" C DT 121 ? ? "C1'" C DT 121 ? ? N1 C DT 121 ? ? 111.78 108.30 3.48 0.30 N 32 1 C6 C DT 121 ? ? C5 C DT 121 ? ? C7 C DT 121 ? ? 119.02 122.90 -3.88 0.60 N 33 1 "O4'" C DT 122 ? ? "C1'" C DT 122 ? ? N1 C DT 122 ? ? 111.29 108.30 2.99 0.30 N 34 1 "O4'" C DT 123 ? ? "C1'" C DT 123 ? ? N1 C DT 123 ? ? 110.80 108.30 2.50 0.30 N 35 1 "O4'" C DA 124 ? ? "C1'" C DA 124 ? ? N9 C DA 124 ? ? 110.45 108.30 2.15 0.30 N 36 1 C5 C DA 124 ? ? N7 C DA 124 ? ? C8 C DA 124 ? ? 99.91 103.90 -3.99 0.50 N 37 1 N7 C DA 124 ? ? C8 C DA 124 ? ? N9 C DA 124 ? ? 120.41 113.80 6.61 0.50 N 38 1 C8 C DA 124 ? ? N9 C DA 124 ? ? C4 C DA 124 ? ? 102.67 105.80 -3.13 0.40 N 39 1 "O4'" C DT 125 ? ? "C1'" C DT 125 ? ? N1 C DT 125 ? ? 112.64 108.30 4.34 0.30 N 40 1 "O4'" C DC 126 ? ? "C1'" C DC 126 ? ? N1 C DC 126 ? ? 110.54 108.30 2.24 0.30 N 41 1 "O4'" C DT 127 ? ? "C1'" C DT 127 ? ? N1 C DT 127 ? ? 110.92 108.30 2.62 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 5 ? ? -67.81 85.79 2 1 CYS A 10 ? ? -141.73 17.21 3 1 GLN A 11 ? ? 52.60 15.93 4 1 LEU A 44 ? ? -74.62 30.85 5 1 ASN A 55 ? ? -60.90 96.86 # _ndb_struct_conf_na.entry_id 1GAT _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 8 1_555 0.781 0.048 -0.630 -21.560 -15.393 -2.698 1 B_DA106:DT127_C B 106 ? C 127 ? 20 1 1 A DG 2 1_555 B DC 7 1_555 -0.334 -0.345 -0.286 -13.054 -26.950 -7.467 2 B_DG107:DC126_C B 107 ? C 126 ? 19 1 1 A DA 3 1_555 B DT 6 1_555 1.221 -0.057 -0.117 -18.848 -19.182 -17.884 3 B_DA108:DT125_C B 108 ? C 125 ? 20 1 1 A DT 4 1_555 B DA 5 1_555 -0.825 0.018 0.119 -12.545 -11.693 -11.930 4 B_DT109:DA124_C B 109 ? C 124 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.722 0.028 0.278 2.147 7.837 -5.245 5 B_DA110:DT123_C B 110 ? C 123 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.396 0.038 -0.266 2.003 -6.471 -1.528 6 B_DA111:DT122_C B 111 ? C 122 ? 20 1 1 A DA 7 1_555 B DT 2 1_555 0.888 -0.005 -0.071 12.994 -15.660 -0.604 7 B_DA112:DT121_C B 112 ? C 121 ? 20 1 1 A DC 8 1_555 B DG 1 1_555 0.170 -0.049 -0.031 4.894 -1.418 -0.723 8 B_DC113:DG120_C B 113 ? C 120 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 8 1_555 A DG 2 1_555 B DC 7 1_555 0.080 0.124 2.825 -4.943 7.135 25.091 -1.364 -1.307 2.693 15.831 10.968 26.527 1 BB_DA106DG107:DC126DT127_CC B 106 ? C 127 ? B 107 ? C 126 ? 1 A DG 2 1_555 B DC 7 1_555 A DA 3 1_555 B DT 6 1_555 -0.475 0.002 3.192 -2.093 -6.569 48.941 0.481 0.416 3.183 -7.883 2.512 49.395 2 BB_DG107DA108:DT125DC126_CC B 107 ? C 126 ? B 108 ? C 125 ? 1 A DA 3 1_555 B DT 6 1_555 A DT 4 1_555 B DA 5 1_555 0.051 -0.301 2.904 -0.639 -6.788 25.631 0.959 -0.262 2.884 -14.967 1.408 26.508 3 BB_DA108DT109:DA124DT125_CC B 108 ? C 125 ? B 109 ? C 124 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 0.898 0.683 3.211 0.422 -6.275 39.812 1.678 -1.258 3.082 -9.145 -0.615 40.286 4 BB_DT109DA110:DT123DA124_CC B 109 ? C 124 ? B 110 ? C 123 ? 1 A DA 5 1_555 B DT 4 1_555 A DA 6 1_555 B DT 3 1_555 0.240 0.288 4.374 -0.319 -14.957 34.048 3.105 -0.433 3.911 -24.149 0.515 37.100 5 BB_DA110DA111:DT122DT123_CC B 110 ? C 123 ? B 111 ? C 122 ? 1 A DA 6 1_555 B DT 3 1_555 A DA 7 1_555 B DT 2 1_555 0.367 0.301 3.224 0.606 3.814 35.208 -0.061 -0.516 3.243 6.283 -0.998 35.413 6 BB_DA111DA112:DT121DT122_CC B 111 ? C 122 ? B 112 ? C 121 ? 1 A DA 7 1_555 B DT 2 1_555 A DC 8 1_555 B DG 1 1_555 -0.960 -0.481 3.269 -1.268 7.945 31.530 -2.233 1.496 3.095 14.330 2.287 32.515 7 BB_DA112DC113:DG120DT121_CC B 112 ? C 121 ? B 113 ? C 120 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #