HEADER DNA BINDING PROTEIN 18-JUL-95 1GCB TITLE GAL6, YEAST BLEOMYCIN HYDROLASE DNA-BINDING PROTEASE (THIOL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAL6 HG (EMTS) DERIVATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: SC277; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS DNA-BINDING, PEPTIDASE, CYSTEINE PROTEASE, REGULATORY FACTOR, KEYWDS 2 BLEOMYCIN HYDROLASE, RING PROTEIN, DNA-BINDING PROTEIN, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.JOSHUA-TOR,H.E.XU,S.A.JOHNSTON,D.C.REES REVDAT 4 07-FEB-24 1GCB 1 KEYWDS REMARK LINK REVDAT 3 13-JUL-11 1GCB 1 VERSN REVDAT 2 24-FEB-09 1GCB 1 VERSN REVDAT 1 15-OCT-95 1GCB 0 JRNL AUTH L.JOSHUA-TOR,H.E.XU,S.A.JOHNSTON,D.C.REES JRNL TITL CRYSTAL STRUCTURE OF A CONSERVED PROTEASE THAT BINDS DNA: JRNL TITL 2 THE BLEOMYCIN HYDROLASE, GAL6. JRNL REF SCIENCE V. 269 945 1995 JRNL REFN ISSN 0036-8075 JRNL PMID 7638617 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.E.XU,S.A.JOHNSTON REMARK 1 TITL YEAST BLEOMYCIN HYDROLASE IS A DNA-BINDING CYSTEINE REMARK 1 TITL 2 PROTEASE: IDENTIFICATION, PURIFICATION, BIOCHEMICAL REMARK 1 TITL 3 CHARACTERIZATION REMARK 1 REF J.BIOL.CHEM. V. 269 21177 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.380 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.180 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 FOR RESIDUE LEU 452 THE ELECTRON DENSITY IS LARGER THAN REMARK 3 EXPECTED. REMARK 4 REMARK 4 1GCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SSRL; NULL REMARK 200 BEAMLINE : BL7-1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.08; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MSC, CCP4 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.94000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.94000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.94000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.94000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.94000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SYMMETRY REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED REMARK 300 BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. REMARK 300 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 IDENTITY MATRIX REMARK 300 REMARK 300 SYMMETRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 300 SYMMETRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 MONOMER 2 OF HEXAMER REMARK 300 REMARK 300 SYMMETRY1 3 0.000000 -1.000000 0.000000 1.00000 REMARK 300 SYMMETRY2 3 1.000000 -1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 300 SYMMETRY1 4 -0.500000 -0.866000 0.000000 151.15000 REMARK 300 SYMMETRY2 4 0.866000 -0.500000 0.000000 0.00000 REMARK 300 SYMMETRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 MONOMER 3 OF HEXAMER REMARK 300 REMARK 300 SYMMETRY1 5 -1.000000 1.000000 0.000000 1.00000 REMARK 300 SYMMETRY2 5 -1.000000 0.000000 0.000000 1.00000 REMARK 300 SYMMETRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 300 SYMMETRY1 6 -0.500000 0.866000 0.000000 75.58000 REMARK 300 SYMMETRY2 6 -0.866000 -0.500000 0.000000 130.90000 REMARK 300 SYMMETRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 MONOMER 4 OF HEXAMER REMARK 300 REMARK 300 SYMMETRY1 7 0.000000 -1.000000 0.000000 1.00000 REMARK 300 SYMMETRY2 7 -1.000000 0.000000 0.000000 1.00000 REMARK 300 SYMMETRY3 7 0.000000 0.000000 -1.000000 0.50000 REMARK 300 SYMMETRY1 8 0.500000 -0.866000 0.000000 75.58000 REMARK 300 SYMMETRY2 8 -0.866000 -0.500000 0.000000 130.90000 REMARK 300 SYMMETRY3 8 0.000000 0.000000 -1.000000 44.94000 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 MONOMER 5 OF HEXAMER (DIMER PARTNER OF MONOMER 1) REMARK 300 REMARK 300 SYMMETRY1 9 1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 9 1.000000 -1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 9 0.000000 0.000000 -1.000000 0.50000 REMARK 300 SYMMETRY1 10 0.500000 0.866000 0.000000 0.00000 REMARK 300 SYMMETRY2 10 0.866000 -0.500000 0.000000 0.00000 REMARK 300 SYMMETRY3 10 0.000000 0.000000 -1.000000 44.94000 REMARK 300 APPLIED TO RESIDUES: 2 .. 453 REMARK 300 REMARK 300 MONOMER 6 OF HEXAMER REMARK 300 REMARK 300 SYMMETRY1 11 -1.000000 1.000000 0.000000 1.00000 REMARK 300 SYMMETRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 11 0.000000 0.000000 -1.000000 0.50000 REMARK 300 SYMMETRY1 12 -1.000000 0.000000 0.000000 151.15000 REMARK 300 SYMMETRY2 12 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 12 0.000000 0.000000 -1.000000 44.94000 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 42180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 95990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -742.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 151.15000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 75.57500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 130.89974 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 75.57500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 130.89974 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 44.94000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 151.15000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 44.94000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 44.94000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 454 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 380 REMARK 475 THR A 381 REMARK 475 SER A 382 REMARK 475 LYS A 383 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 89 CD OE1 OE2 REMARK 480 LYS A 93 NZ REMARK 480 ARG A 174 NE CZ NH1 NH2 REMARK 480 GLU A 197 CB CG CD OE1 OE2 REMARK 480 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 281 CD CE NZ REMARK 480 LYS A 309 CE NZ REMARK 480 LYS A 313 CG CD CE NZ REMARK 480 ASN A 423 CG OD1 ND2 REMARK 480 LYS A 427 CD CE NZ REMARK 480 GLU A 428 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 91.03 -66.16 REMARK 500 LYS A 68 -144.72 58.55 REMARK 500 TYR A 163 101.53 -166.82 REMARK 500 ALA A 172 68.43 -153.48 REMARK 500 ARG A 287 -9.63 60.17 REMARK 500 ASN A 290 -49.28 -139.50 REMARK 500 GLU A 380 79.81 -66.95 REMARK 500 THR A 381 -83.20 -174.30 REMARK 500 SER A 382 18.40 -162.88 REMARK 500 LYS A 383 -138.90 -97.79 REMARK 500 SER A 435 -139.27 -83.47 REMARK 500 GLU A 438 91.02 -58.87 REMARK 500 LEU A 452 -159.39 -49.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 902 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 55 OG1 REMARK 620 2 CYS A 376 SG 50.0 REMARK 620 3 VAL A 378 N 108.6 125.7 REMARK 620 4 HG A 903 HG 113.6 64.8 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 904 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 ALA A 453 O 69.2 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 IN THE SHEET RECORDS BELOW STRAND 7 OF SHEET B IS REPEATED REMARK 700 IN SHEET C BECAUSE IT TAKES PART IN BOTH SHEETS. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 851 DBREF 1GCB A 1 454 UNP Q01532 BLH1_YEAST 1 454 SEQRES 1 A 454 MET SER SER SER ILE ASP ILE SER LYS ILE ASN SER TRP SEQRES 2 A 454 ASN LYS GLU PHE GLN SER ASP LEU THR HIS GLN LEU ALA SEQRES 3 A 454 THR THR VAL LEU LYS ASN TYR ASN ALA ASP ASP ALA LEU SEQRES 4 A 454 LEU ASN LYS THR ARG LEU GLN LYS GLN ASP ASN ARG VAL SEQRES 5 A 454 PHE ASN THR VAL VAL SER THR ASP SER THR PRO VAL THR SEQRES 6 A 454 ASN GLN LYS SER SER GLY ARG CYS TRP LEU PHE ALA ALA SEQRES 7 A 454 THR ASN GLN LEU ARG LEU ASN VAL LEU SER GLU LEU ASN SEQRES 8 A 454 LEU LYS GLU PHE GLU LEU SER GLN ALA TYR LEU PHE PHE SEQRES 9 A 454 TYR ASP LYS LEU GLU LYS ALA ASN TYR PHE LEU ASP GLN SEQRES 10 A 454 ILE VAL SER SER ALA ASP GLN ASP ILE ASP SER ARG LEU SEQRES 11 A 454 VAL GLN TYR LEU LEU ALA ALA PRO THR GLU ASP GLY GLY SEQRES 12 A 454 GLN TYR SER MET PHE LEU ASN LEU VAL LYS LYS TYR GLY SEQRES 13 A 454 LEU ILE PRO LYS ASP LEU TYR GLY ASP LEU PRO TYR SER SEQRES 14 A 454 THR THR ALA SER ARG LYS TRP ASN SER LEU LEU THR THR SEQRES 15 A 454 LYS LEU ARG GLU PHE ALA GLU THR LEU ARG THR ALA LEU SEQRES 16 A 454 LYS GLU ARG SER ALA ASP ASP SER ILE ILE VAL THR LEU SEQRES 17 A 454 ARG GLU GLN MET GLN ARG GLU ILE PHE ARG LEU MET SER SEQRES 18 A 454 LEU PHE MET ASP ILE PRO PRO VAL GLN PRO ASN GLU GLN SEQRES 19 A 454 PHE THR TRP GLU TYR VAL ASP LYS ASP LYS LYS ILE HIS SEQRES 20 A 454 THR ILE LYS SER THR PRO LEU GLU PHE ALA SER LYS TYR SEQRES 21 A 454 ALA LYS LEU ASP PRO SER THR PRO VAL SER LEU ILE ASN SEQRES 22 A 454 ASP PRO ARG HIS PRO TYR GLY LYS LEU ILE LYS ILE ASP SEQRES 23 A 454 ARG LEU GLY ASN VAL LEU GLY GLY ASP ALA VAL ILE TYR SEQRES 24 A 454 LEU ASN VAL ASP ASN GLU THR LEU SER LYS LEU VAL VAL SEQRES 25 A 454 LYS ARG LEU GLN ASN ASN LYS ALA VAL PHE PHE GLY SER SEQRES 26 A 454 HIS THR PRO LYS PHE MET ASP LYS LYS THR GLY VAL MET SEQRES 27 A 454 ASP ILE GLU LEU TRP ASN TYR PRO ALA ILE GLY TYR ASN SEQRES 28 A 454 LEU PRO GLN GLN LYS ALA SER ARG ILE ARG TYR HIS GLU SEQRES 29 A 454 SER LEU MET THR HIS ALA MET LEU ILE THR GLY CYS HIS SEQRES 30 A 454 VAL ASP GLU THR SER LYS LEU PRO LEU ARG TYR ARG VAL SEQRES 31 A 454 GLU ASN SER TRP GLY LYS ASP SER GLY LYS ASP GLY LEU SEQRES 32 A 454 TYR VAL MET THR GLN LYS TYR PHE GLU GLU TYR CYS PHE SEQRES 33 A 454 GLN ILE VAL VAL ASP ILE ASN GLU LEU PRO LYS GLU LEU SEQRES 34 A 454 ALA SER LYS PHE THR SER GLY LYS GLU GLU PRO ILE VAL SEQRES 35 A 454 LEU PRO ILE TRP ASP PRO MET GLY ALA LEU ALA LYS HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET HG A 901 1 HET HG A 902 1 HET HG A 903 1 HET HG A 904 1 HET GOL A 851 6 HETNAM SO4 SULFATE ION HETNAM HG MERCURY (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HG 4(HG 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *238(H2 O) HELIX 1 1 ILE A 7 SER A 19 1 13 HELIX 2 2 LEU A 21 LEU A 30 1 10 HELIX 3 3 ALA A 35 LEU A 39 1 5 HELIX 4 4 LYS A 42 GLN A 48 1 7 HELIX 5 5 CYS A 73 GLU A 89 1 17 HELIX 6 6 GLN A 99 SER A 121 1 23 HELIX 7 7 ARG A 129 ALA A 136 1 8 HELIX 8 8 TYR A 145 TYR A 155 1 11 HELIX 9 9 LYS A 160 LEU A 162 5 3 HELIX 10 10 TYR A 168 THR A 171 1 4 HELIX 11 11 ARG A 174 GLU A 197 1 24 HELIX 12 12 SER A 203 PHE A 223 1 21 HELIX 13 13 PRO A 253 LYS A 259 1 7 HELIX 14 14 ASN A 304 GLN A 316 1 13 HELIX 15 15 TYR A 345 ILE A 348 5 4 HELIX 16 16 LYS A 356 ARG A 361 1 6 HELIX 17 17 GLN A 408 TYR A 414 1 7 HELIX 18 18 ILE A 422 GLU A 424 5 3 HELIX 19 19 LYS A 427 THR A 434 1 8 SHEET 1 A 2 GLN A 234 VAL A 240 0 SHEET 2 A 2 ILE A 246 THR A 252 -1 N SER A 251 O PHE A 235 SHEET 1 B11 ILE A 441 LEU A 443 0 SHEET 2 B11 LEU A 282 ILE A 285 1 N LYS A 284 O ILE A 441 SHEET 3 B11 ILE A 298 ASN A 301 -1 N TYR A 299 O ILE A 283 SHEET 4 B11 PRO A 268 ILE A 272 1 N SER A 270 O LEU A 300 SHEET 5 B11 CYS A 415 ASP A 421 -1 N VAL A 420 O VAL A 269 SHEET 6 B11 VAL A 321 SER A 325 -1 N GLY A 324 O PHE A 416 SHEET 7 B11 HIS A 369 HIS A 377 -1 N ILE A 373 O VAL A 321 SHEET 8 B11 ARG A 387 GLU A 391 -1 N GLU A 391 O LEU A 372 SHEET 9 B11 LEU A 403 THR A 407 -1 N MET A 406 O TYR A 388 SHEET 10 B11 GLY A 336 ASP A 339 1 N MET A 338 O VAL A 405 SHEET 11 B11 PHE A 330 LYS A 333 -1 N ASP A 332 O VAL A 337 SHEET 1 C 2 THR A 55 VAL A 57 0 SHEET 2 C 2 HIS A 369 HIS A 377 -1 N CYS A 376 O THR A 55 LINK OG1 THR A 55 HG HG A 902 1555 1555 3.24 LINK SG CYS A 73 HG HG A 904 1555 1555 2.12 LINK SG CYS A 376 HG HG A 902 1555 1555 2.19 LINK SG CYS A 376 HG HG A 903 1555 1555 2.61 LINK N VAL A 378 HG HG A 902 1555 1555 3.15 LINK SG CYS A 415 HG HG A 901 1555 1555 2.53 LINK O ALA A 453 HG HG A 904 1555 1555 3.52 LINK HG HG A 902 HG HG A 903 1555 1555 2.64 CISPEP 1 THR A 62 PRO A 63 0 -0.03 CISPEP 2 THR A 327 PRO A 328 0 -0.52 SITE 1 CAT 3 CYS A 73 HIS A 369 ASN A 392 SITE 1 AC1 5 ASN A 66 GLY A 395 LYS A 396 HOH A 675 SITE 2 AC1 5 HOH A 714 SITE 1 AC2 6 ILE A 126 ARG A 192 LYS A 196 TYR A 362 SITE 2 AC2 6 HOH A 643 HOH A 644 SITE 1 AC3 7 LYS A 175 SER A 178 PRO A 328 LYS A 329 SITE 2 AC3 7 HOH A 691 HOH A 697 HOH A 698 SITE 1 AC4 2 PHE A 411 CYS A 415 SITE 1 AC5 4 THR A 55 CYS A 376 VAL A 378 HG A 903 SITE 1 AC6 4 VAL A 312 CYS A 376 PRO A 385 HG A 902 SITE 1 AC7 3 GLY A 71 CYS A 73 ALA A 453 SITE 1 AC8 8 GLN A 81 LEU A 82 ASN A 85 LYS A 262 SITE 2 AC8 8 ARG A 314 LYS A 319 ASP A 421 HOH A 684 CRYST1 151.150 151.150 89.880 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006616 0.003820 0.000000 0.00000 SCALE2 0.000000 0.007639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011126 0.00000