HEADER CRYSTALLIN 09-AUG-85 1GCR OBSLTE 31-OCT-93 1GCR 4GCR TITLE X-RAY STUDIES OF THE LENS SPECIFIC PROTEINS. THE CRYSTALLINS COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS CRYSTALLIN EXPDTA X-RAY DIFFRACTION AUTHOR C.SLINGSBY,P.LINDLEY,D.MOSS,T.BLUNDELL,B.TURNELL,G.WISTOW, AUTHOR 2 L.SUMMERS REVDAT 3 31-OCT-93 1GCR 3 OBSLTE REVDAT 2 09-OCT-88 1GCR 1 FORMUL REVDAT 1 21-JAN-86 1GCR 0 JRNL AUTH L.SUMMERS,G.WISTOW,M.NAREBOR,D.MOSS,P.LINDLEY, JRNL AUTH 2 C.SLINGSBY,T.BLUNDELL,H.BARTUNIK,K.BARTELS JRNL TITL X-RAY STUDIES OF THE LENS SPECIFIC PROTEINS. THE JRNL TITL 2 CRYSTALLINS JRNL REF PEPT.PROTEIN REV. V. 3 147 1984 JRNL REFN ASTM PPRVDF US ISSN 0731-1753 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.WISTOW,B.TURNELL,L.SUMMERS,C.SLINGSBY,D.MOSS, REMARK 1 AUTH 2 L.MILLER,P.LINDLEY,T.BLUNDELL REMARK 1 TITL X-RAY ANALYSIS OF THE EYE LENS PROTEIN GAMMA-/II REMARK 1 TITL 2 CRYSTALLIN AT 1.9 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 170 175 1983 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.BLUNDELL,P.LINDLEY,L.MILLER,D.MOSS,C.SLINGSBY, REMARK 1 AUTH 2 I.TICKLE,B.TURNELL,G.WISTOW REMARK 1 TITL THE MOLECULAR STRUCTURE AND STABILITY OF THE EYE REMARK 1 TITL 2 LENS. X-RAY ANALYSIS OF GAMMA-CRYSTALLIN /II REMARK 1 REF NATURE V. 289 771 1981 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GCR COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1GCR THERE IS A GOOD INDICATION THAT RESIDUES CYS 18 AND REMARK 5 CYS 22 1GCR ARE LINKED BY A DISULFIDE BRIDGE IN MANY REMARK 5 MOLECULES IN THE 1GCR CRYSTALS USED FOR THIS STUDY. 1GCR REMARK 6 REMARK 6 1GCR THE QUANTITY GIVEN IN THE TEMPERATURE FACTOR FIELD OF REMARK 6 THE 1GCR *ATOM* AND *HETATM* RECORDS BELOW IS U**2, WHICH REMARK 6 IS THE 1GCR MEAN-SQUARE AMPLITUDE OF ATOMIC VIBRATION. THE REMARK 6 TEMPERATURE 1GCR FACTOR,B, CAN BE DERIVED BY THE FOLLOWING REMARK 6 RELATION - 1GCR B = 8 * (PI)**2 * U**2 1GCR REMARK 7 REMARK 7 1GCR CORRECTION. CORRECT FORMAT OF FORMUL RECORD. 09-OCT- REMARK 7 88. 1GCR REMARK 8 REMARK 8 1GCR CORRECTION. THIS ENTRY IS OBSOLETE. 31-OCT-93. 1GCR REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 1/2-Y,1/2+X,1/4+Z REMARK 290 4555 1/2+Y,1/2-X,3/4+Z REMARK 290 5555 1/2-X,1/2+Y,1/4-Z REMARK 290 6555 1/2+X,1/2-Y,3/4-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.65000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.95000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.65000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.95000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 209 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH 264 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH 267 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH 271 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH 273 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH 275 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH 284 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH 285 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH 299 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH 301 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH 306 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH 321 DISTANCE = 5.83 ANGSTROMS SEQRES 1 174 GLY LYS ILE THR PHE TYR GLU ASP ARG GLY PHE GLN GLY SEQRES 2 174 HIS CYS TYR GLU CYS SER SER ASP CYS PRO ASN LEU GLN SEQRES 3 174 PRO TYR PHE SER ARG CYS ASN SER ILE ARG VAL ASP SER SEQRES 4 174 GLY CYS TRP MET LEU TYR GLU ARG PRO ASN TYR GLN GLY SEQRES 5 174 HIS GLN TYR PHE LEU ARG ARG GLY ASP TYR PRO ASP TYR SEQRES 6 174 GLN GLN TRP MET GLY PHE ASN ASP SER ILE ARG SER CYS SEQRES 7 174 ARG LEU ILE PRO GLN HIS THR GLY THR PHE ARG MET ARG SEQRES 8 174 ILE TYR GLU ARG ASP ASP PHE ARG GLY GLN MET SER GLU SEQRES 9 174 ILE THR ASP ASP CYS PRO SER LEU GLN ASP ARG PHE HIS SEQRES 10 174 LEU SER GLU VAL HIS SER LEU ASN VAL LEU GLU GLY SER SEQRES 11 174 TRP VAL LEU TYR GLU MET PRO SER TYR ARG GLY ARG GLN SEQRES 12 174 TYR LEU LEU ARG PRO GLY GLU TYR ARG ARG TYR LEU ASP SEQRES 13 174 TRP GLY ALA MET ASN ALA LYS VAL GLY SER LEU ARG ARG SEQRES 14 174 VAL MET ASP PHE TYR FORMUL 2 HOH *118(H2 O1) HELIX 1 H1 ASP 64 MET 69 5 6 HELIX 2 H2 SER 111 HIS 117 1 7 HELIX 3 H3 ARG 153 GLY 158 5 6 SHEET 1 A 4 GLN 12 CYS 18 0 SHEET 2 A 4 LYS 2 ASP 8 -1 N ILE 3 O CYS 18 SHEET 3 A 4 SER 34 SER 39 -1 O SER 39 N LYS 2 SHEET 4 A 4 GLY 60 TYR 62 -1 N GLY 60 O VAL 37 SHEET 1 B 4 ASP 21 PRO 23 0 SHEET 2 B 4 SER 77 ILE 81 -1 N CYS 78 O CYS 22 SHEET 3 B 4 CYS 41 ARG 47 -1 N MET 43 O SER 77 SHEET 4 B 4 GLN 51 LEU 57 -1 N LEU 57 O TRP 42 SHEET 1 C 4 MET 102 ILE 105 0 SHEET 2 C 4 ARG 89 TYR 93 -1 N MET 90 O ILE 105 SHEET 3 C 4 SER 123 GLU 128 -1 N ASN 125 O ARG 91 SHEET 4 C 4 GLY 149 TYR 151 -1 N GLY 149 O VAL 126 SHEET 1 D1 4 ASP 108 PRO 110 0 SHEET 2 D1 4 ALA 162 ARG 169 -1 N LEU 167 O CYS 109 SHEET 3 D1 4 TRP 131 MET 136 -1 N VAL 132 O ARG 168 SHEET 4 D1 4 ARG 140 LEU 146 -1 N TYR 144 O LEU 133 SHEET 1 D2 4 SER 119 VAL 121 0 SHEET 2 D2 4 ALA 162 ARG 169 -1 N VAL 164 O SER 119 SHEET 3 D2 4 TRP 131 MET 136 -1 N VAL 132 O ARG 168 SHEET 4 D2 4 ARG 140 LEU 146 -1 N TYR 144 O LEU 133 TURN 1 BH1 ASP 8 GLN 12 TYPE I(PRIME) TURN 2 BT1 LEU 25 TYR 28 TYPE I TURN 3 BH2 ARG 47 GLN 51 TYPE II TURN 4 BH3 ARG 95 ARG 99 TYPE I(PRIME) TURN 5 BH4 MET 136 ARG 140 MIXED TYPE I(PRIME) + TYPE II CRYST1 58.000 58.000 98.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017241 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010142 0.00000