HEADER VIRUS CAPSID PROTEIN 03-JUL-96 1GDS OBSLTE 26-MAR-04 1GDS 1GWP TITLE HIV-1 CAPSID PROTEIN, AMINO-TERMINAL CORE DOMAIN RESIDUES 1- TITLE 2 151, NMR: MODELS 1-17 OF A 50 MODEL SET COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: AMINO-TERMINAL CORE DOMAIN RESIDUES 1 - 151; COMPND 6 SYNONYM: HIV-1 CA, HIVP24, P24, CA, CA-151; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 CELL_LINE: CLONE 12; SOURCE 5 GENE: CYCLOPHILIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 9 EXPRESSION_SYSTEM_GENE: CYCLOPHILIN; SOURCE 10 OTHER_DETAILS: CA151 WAS AMPLIFIED FROM THE FULL LENGTH SOURCE 11 CA231(PNL4-3) USING PCR KEYWDS HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN, AMIMO- KEYWDS 2 TERMINAL CORE DOMAIN, HIV-1 CA-151, VIRUS CAPSID PROTEIN EXPDTA NMR, 17 STRUCTURES AUTHOR R.K.GITTI,B.M.LEE,J.WALKER,M.F.SUMMERS,S.YOO,W.I.SUNDQUIST REVDAT 1 30-DEC-96 1GDS 0 JRNL AUTH R.K.GITTI,B.M.LEE,J.WALKER,M.F.SUMMERS,S.YOO, JRNL AUTH 2 W.I.SUNDQUIST JRNL TITL STRUCTURE OF THE AMINO-TERMINAL CORE DOMAIN OF THE JRNL TITL 2 HIV-1 CAPSID PROTEIN. JRNL REF SCIENCE V. 273 231 1996 JRNL REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GDS COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : OMEGA PSG REMARK 210 SPECTROMETER MANUFACTURER : GE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 146 159.60 57.62 REMARK 500 1 ILE A 150 163.67 56.87 REMARK 500 2 ALA A 88 147.99 76.90 REMARK 500 3 ILE A 91 140.22 74.80 REMARK 500 5 HIS A 87 169.20 83.73 REMARK 500 5 ALA A 88 125.78 80.93 REMARK 500 10 THR A 148 135.17 62.84 REMARK 500 10 SER A 149 -80.33 66.46 REMARK 500 11 LEU A 6 -53.55 74.26 REMARK 500 11 SER A 149 161.87 69.36 REMARK 500 12 ALA A 88 155.67 83.57 REMARK 500 13 ILE A 150 -105.60 65.01 REMARK 500 14 PHE A 32 125.58 59.85 REMARK 500 15 PHE A 32 168.00 53.09 REMARK 500 16 MET A 96 165.65 54.85 REMARK 500 16 SER A 149 -87.09 56.83 REMARK 650 REMARK 650 HELIX REMARK 650 HELIX 1: S16 TO L30 (RIGHT-HANDED ALPHA) REMARK 650 HELIX 2: S33 TO A47 (RIGHT-HANDED ALPHA WHICH CHANGES REMARK 650 TO 3-10 RIGHT-HANDED AT S44) REMARK 650 HELIX 3: T48 TO T58 (RIGHT-HANDED ALPHA) REMARK 650 HELIX 4: Q63 TO L83 (RIGHT-HANDED ALPHA) REMARK 650 HELIX 5: R100 TO A105 (RIGHT-HANDED ALPHA) REMARK 650 HELIX 6: T110 TO T119 (RIGHT-HANDED ALPHA) REMARK 650 HELIX 7: V126 TO T145 (RIGHT-HANDED ALPHA) REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CYP REMARK 800 SITE_DESCRIPTION: HUMAN CELLULAR PROLINE ROTAMASE REMARK 800 CYCLOPHILIN A BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: SLT REMARK 800 SITE_DESCRIPTION: SALT BRIDGE FORMATION SITE. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 THIS ENTRY CONTAINS MODELS 1 - 17 OF A 50 MODEL SET. REMARK 900 MODELS 18 - 34 CAN BE FOUND IN PDB ENTRY 1GDY. REMARK 900 MODELS 35 - 50 CAN BE FOUND IN PDB ENTRY 1GDZ. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1GDS SWS P12493 1 - 131 NOT IN ATOMS LIST REMARK 999 1GDS SWS P12493 283 - 499 NOT IN ATOMS LIST REMARK 999 REMARK 999 REFERENCE REMARK 999 REFERENCE: R.K. GITTI, B.M.LEE, J.WALKER, M.F.SUMMERS, REMARK 999 S.YOO, W.I.SUNDQUIST (1996) STRUCTURE OF THE REMARK 999 AMINO-TERMINAL CORE DOMAIN OF THE HIV-1 CAPSID PROTEIN, REMARK 999 SCIENCE, IN PRESS. DBREF 1GDS A 1 151 UNP P12493 GAG_HV1N5 132 282 SEQRES 1 A 151 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 151 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 151 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 151 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 151 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 151 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 151 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 151 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 151 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 151 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 151 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 151 MET TYR SER PRO THR SER ILE LEU HELIX 1 1 PRO A 17 GLU A 29 1 13 HELIX 2 2 ILE A 37 LEU A 43 1 7 HELIX 3 3 PRO A 49 THR A 58 1 10 HELIX 4 4 GLN A 63 ARG A 82 1 20 HELIX 5 5 LEU A 111 TRP A 117 1 7 HELIX 6 6 VAL A 126 SER A 146 1 21 SHEET 1 A 2 ILE A 2 GLN A 4 0 SHEET 2 A 2 MET A 10 HIS A 12 -1 N VAL A 11 O VAL A 3 CISPEP 1 ASN A 121 PRO A 122 1 0.05 CISPEP 2 ASN A 121 PRO A 122 2 -0.06 CISPEP 3 ASN A 121 PRO A 122 3 0.05 CISPEP 4 ASN A 121 PRO A 122 4 -0.10 CISPEP 5 ASN A 121 PRO A 122 5 0.03 CISPEP 6 ASN A 121 PRO A 122 6 0.02 CISPEP 7 ASN A 121 PRO A 122 7 0.01 CISPEP 8 ASN A 121 PRO A 122 8 0.08 CISPEP 9 ASN A 121 PRO A 122 9 0.07 CISPEP 10 ASN A 121 PRO A 122 10 0.02 CISPEP 11 ASN A 121 PRO A 122 11 0.02 CISPEP 12 ASN A 121 PRO A 122 12 0.01 CISPEP 13 ASN A 121 PRO A 122 13 -0.04 CISPEP 14 ASN A 121 PRO A 122 14 0.13 CISPEP 15 ASN A 121 PRO A 122 15 -0.07 CISPEP 16 ASN A 121 PRO A 122 16 0.02 CISPEP 17 ASN A 121 PRO A 122 17 0.05 SITE 1 CYP 1 PRO A 90 SITE 1 SLT 2 PRO A 1 ASP A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1