HEADER ACYLTRANSFERASE 16-JAN-96 1GHJ TITLE SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE 2-OXOGLUTARATE TITLE 2 DEHYDROGENASE COMPLEX FROM AZOTOBACTER VINELAND II, NMR, MINIMIZED TITLE 3 AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E2, THE DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT OF COMPND 3 2-OXOGLUTARATE DEHYDROGENASE COMPLEX; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: LIPOYL DOMAIN, RESIDUES 1-79; COMPND 6 SYNONYM: E2; COMPND 7 EC: 2.3.1.61; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, TRANSFERASE, ACYLTRANSFERASE, LIPOYL EXPDTA SOLUTION NMR AUTHOR A.BERG,J.VERVOORT,A.DE KOK REVDAT 4 29-NOV-17 1GHJ 1 REMARK HELIX REVDAT 3 24-FEB-09 1GHJ 1 VERSN REVDAT 2 01-APR-03 1GHJ 1 JRNL REVDAT 1 11-JAN-97 1GHJ 0 JRNL AUTH A.BERG,J.VERVOORT,A.DE KOK JRNL TITL SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE JRNL TITL 2 2-OXOGLUTARATE DEHYDROGENASE COMPLEX FROM AZOTOBACTER JRNL TITL 3 VINELANDII. JRNL REF J.MOL.BIOL. V. 261 432 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8780784 JRNL DOI 10.1006/JMBI.1996.0474 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BERG,O.SMITS,A.DE KOK,J.VERVOORT REMARK 1 TITL SEQUENTIAL 1H AND 15N NUCLEAR MAGNETIC RESONANCE ASSIGNMENTS REMARK 1 TITL 2 AND SECONDARY STRUCTURE OF THE LIPOYL DOMAIN OF THE REMARK 1 TITL 3 2-OXOGLUTARATE DEHYDROGENASE COMPLEX FROM AZOTOBACTER REMARK 1 TITL 4 VINELANDII. EVIDENCE FOR HIGH STRUCTURAL SIMILARITY WITH THE REMARK 1 TITL 5 LIPOYL DOMAIN OF THE PYRUVATE DEHYDROGENASE COMPLEX REMARK 1 REF EUR.J.BIOCHEM. V. 234 148 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173574. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 -160.00 -78.00 REMARK 500 ASP A 15 -170.89 -176.59 REMARK 500 VAL A 18 159.92 -48.22 REMARK 500 ALA A 19 -74.70 -104.22 REMARK 500 ASP A 32 37.78 70.01 REMARK 500 LEU A 34 158.96 -40.42 REMARK 500 ILE A 35 -41.83 -141.27 REMARK 500 LYS A 42 28.58 -153.22 REMARK 500 ALA A 51 145.38 166.53 REMARK 500 ASP A 52 170.82 -58.87 REMARK 500 GLU A 57 148.21 -179.56 REMARK 500 GLU A 77 -168.97 -60.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 31 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GHK RELATED DB: PDB DBREF 1GHJ A 1 79 UNP P20708 ODO2_AZOVI 2 80 SEQRES 1 A 79 ALA ILE ASP ILE LYS ALA PRO THR PHE PRO GLU SER ILE SEQRES 2 A 79 ALA ASP GLY THR VAL ALA THR TRP HIS LYS LYS PRO GLY SEQRES 3 A 79 GLU ALA VAL LYS ARG ASP GLU LEU ILE VAL ASP ILE GLU SEQRES 4 A 79 THR ASP LYS VAL VAL MET GLU VAL LEU ALA GLU ALA ASP SEQRES 5 A 79 GLY VAL ILE ALA GLU ILE VAL LYS ASN GLU GLY ASP THR SEQRES 6 A 79 VAL LEU SER GLY GLU LEU LEU GLY LYS LEU THR GLU GLY SEQRES 7 A 79 GLY SHEET 1 A 4 ILE A 2 LYS A 5 0 SHEET 2 A 4 LEU A 71 THR A 76 -1 N LEU A 75 O ILE A 2 SHEET 3 A 4 GLY A 53 ILE A 58 -1 O VAL A 54 N THR A 76 SHEET 4 A 4 GLU A 27 VAL A 29 -1 N VAL A 29 O GLY A 53 SHEET 1 B 4 VAL A 44 LEU A 48 0 SHEET 2 B 4 LEU A 34 GLU A 39 -1 N ILE A 38 O MET A 45 SHEET 3 B 4 GLY A 16 TRP A 21 -1 O THR A 17 N GLU A 39 SHEET 4 B 4 ASP A 64 VAL A 66 -1 N VAL A 66 O GLY A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000