HEADER IMMUNE SYSTEM/VIRAL PROTEIN RECEPTOR 11-JAN-01 1GHQ TITLE CR2-C3D COMPLEX STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRAGMENT OF ALPHA CHAIN; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR; COMPND 8 CHAIN: B, C; COMPND 9 FRAGMENT: SEQUENCE DATABASE RESIDUES 21-153 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS CR2, C3D, IMMUNE SYSTEM-VIRAL PROTEIN RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SZAKONYI,J.M.GUTHRIDGE,D.LI,V.M.HOLERS,X.S.CHEN REVDAT 6 20-NOV-24 1GHQ 1 REMARK REVDAT 5 27-DEC-23 1GHQ 1 REMARK REVDAT 4 27-OCT-21 1GHQ 1 REMARK SEQADV HETSYN REVDAT 3 29-JUL-20 1GHQ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 24-FEB-09 1GHQ 1 VERSN REVDAT 1 13-JUN-01 1GHQ 0 JRNL AUTH G.SZAKONYI,J.M.GUTHRIDGE,D.LI,K.YOUNG,V.M.HOLERS,X.S.CHEN JRNL TITL STRUCTURE OF COMPLEMENT RECEPTOR 2 IN COMPLEX WITH ITS C3D JRNL TITL 2 LIGAND. JRNL REF SCIENCE V. 292 1725 2001 JRNL REFN ISSN 0036-8075 JRNL PMID 11387479 JRNL DOI 10.1126/SCIENCE.1059118 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 255000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 15.00 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000001525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 287; NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 14-BM-C; X4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 260000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.07477 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.00000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 85.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.07477 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.00000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 85.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.07477 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.00000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 85.00000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 49.07477 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.00000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 85.00000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 49.07477 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.00000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 85.00000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 49.07477 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 98.14955 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 116.00000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 98.14955 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 116.00000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 98.14955 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 116.00000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 98.14955 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 116.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 98.14955 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 116.00000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 98.14955 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 116.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 308 REMARK 465 VAL B 130 REMARK 465 PHE B 131 REMARK 465 PRO B 132 REMARK 465 LEU B 133 REMARK 465 GLU B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU C 124 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 133 N GLU C 134 1.60 REMARK 500 ND1 HIS A 133 OE2 GLU A 135 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 757 O HOH C 757 4555 1.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 135 CB GLU A 135 CG 0.267 REMARK 500 GLU A 135 CG GLU A 135 CD 0.149 REMARK 500 GLU A 135 CD GLU A 135 OE1 -0.070 REMARK 500 SER C 6 CB SER C 6 OG -0.135 REMARK 500 PRO C 21 CD PRO C 21 N -0.252 REMARK 500 SER C 33 CA SER C 33 CB 0.102 REMARK 500 GLU C 74 CB GLU C 74 CG -0.214 REMARK 500 LEU C 133 C GLU C 134 N -0.327 REMARK 500 GLU C 134 C GLU C 134 O 0.244 REMARK 500 GLU C 134 C GLU C 134 OXT -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 135 CG - CD - OE1 ANGL. DEV. = -13.0 DEGREES REMARK 500 GLU A 135 CG - CD - OE2 ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO C 21 N - CD - CG ANGL. DEV. = 7.6 DEGREES REMARK 500 SER C 33 CB - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 GLU C 74 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 LYS C 100 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 THR C 101 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU C 133 CA - C - N ANGL. DEV. = 30.9 DEGREES REMARK 500 LEU C 133 O - C - N ANGL. DEV. = -31.6 DEGREES REMARK 500 GLU C 134 C - N - CA ANGL. DEV. = 51.1 DEGREES REMARK 500 GLU C 134 CA - C - O ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 4.77 81.49 REMARK 500 ALA A 129 84.63 -150.67 REMARK 500 GLU A 145 35.64 70.28 REMARK 500 LYS A 224 19.05 54.84 REMARK 500 LYS A 232 61.93 65.44 REMARK 500 GLN A 233 43.38 -85.17 REMARK 500 SER B 33 179.71 -53.71 REMARK 500 VAL B 52 -52.46 -127.09 REMARK 500 VAL C 52 -56.63 -127.58 REMARK 500 ASN C 102 9.89 80.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 117 OE2 REMARK 620 2 GLU A 117 OE1 52.5 REMARK 620 3 HOH A1108 O 85.7 79.4 REMARK 620 4 HOH B 922 O 100.9 153.2 96.7 REMARK 620 N 1 2 3 DBREF 1GHQ A 3 308 UNP P01024 CO3_HUMAN 996 1300 DBREF 1GHQ B 2 134 UNP P20023 CR2_HUMAN 21 153 DBREF 1GHQ C 2 134 UNP P20023 CR2_HUMAN 21 153 SEQADV 1GHQ MET A 1 UNP P01024 CLONING ARTIFACT SEQADV 1GHQ LEU A 2 UNP P01024 CLONING ARTIFACT SEQADV 1GHQ ALA A 17 UNP P01024 CYS 1010 ENGINEERED MUTATION SEQADV 1GHQ SER A 295 UNP P01024 INSERTION SEQADV 1GHQ ALA B 1 UNP P20023 CLONING ARTIFACT SEQADV 1GHQ ALA C 1 UNP P20023 CLONING ARTIFACT SEQRES 1 A 308 MET LEU ASP ALA GLU ARG LEU LYS HIS LEU ILE VAL THR SEQRES 2 A 308 PRO SER GLY ALA GLY GLU GLN ASN MET ILE GLY MET THR SEQRES 3 A 308 PRO THR VAL ILE ALA VAL HIS TYR LEU ASP GLU THR GLU SEQRES 4 A 308 GLN TRP GLU LYS PHE GLY LEU GLU LYS ARG GLN GLY ALA SEQRES 5 A 308 LEU GLU LEU ILE LYS LYS GLY TYR THR GLN GLN LEU ALA SEQRES 6 A 308 PHE ARG GLN PRO SER SER ALA PHE ALA ALA PHE VAL LYS SEQRES 7 A 308 ARG ALA PRO SER THR TRP LEU THR ALA TYR VAL VAL LYS SEQRES 8 A 308 VAL PHE SER LEU ALA VAL ASN LEU ILE ALA ILE ASP SER SEQRES 9 A 308 GLN VAL LEU CYS GLY ALA VAL LYS TRP LEU ILE LEU GLU SEQRES 10 A 308 LYS GLN LYS PRO ASP GLY VAL PHE GLN GLU ASP ALA PRO SEQRES 11 A 308 VAL ILE HIS GLN GLU MET ILE GLY GLY LEU ARG ASN ASN SEQRES 12 A 308 ASN GLU LYS ASP MET ALA LEU THR ALA PHE VAL LEU ILE SEQRES 13 A 308 SER LEU GLN GLU ALA LYS ASP ILE CYS GLU GLU GLN VAL SEQRES 14 A 308 ASN SER LEU PRO GLY SER ILE THR LYS ALA GLY ASP PHE SEQRES 15 A 308 LEU GLU ALA ASN TYR MET ASN LEU GLN ARG SER TYR THR SEQRES 16 A 308 VAL ALA ILE ALA GLY TYR ALA LEU ALA GLN MET GLY ARG SEQRES 17 A 308 LEU LYS GLY PRO LEU LEU ASN LYS PHE LEU THR THR ALA SEQRES 18 A 308 LYS ASP LYS ASN ARG TRP GLU ASP PRO GLY LYS GLN LEU SEQRES 19 A 308 TYR ASN VAL GLU ALA THR SER TYR ALA LEU LEU ALA LEU SEQRES 20 A 308 LEU GLN LEU LYS ASP PHE ASP PHE VAL PRO PRO VAL VAL SEQRES 21 A 308 ARG TRP LEU ASN GLU GLN ARG TYR TYR GLY GLY GLY TYR SEQRES 22 A 308 GLY SER THR GLN ALA THR PHE MET VAL PHE GLN ALA LEU SEQRES 23 A 308 ALA GLN TYR GLN LYS ASP ALA PRO SER ASP HIS GLN GLU SEQRES 24 A 308 LEU ASN LEU ASP VAL SER LEU GLN LEU SEQRES 1 B 134 ALA ILE SER CYS GLY SER PRO PRO PRO ILE LEU ASN GLY SEQRES 2 B 134 ARG ILE SER TYR TYR SER THR PRO ILE ALA VAL GLY THR SEQRES 3 B 134 VAL ILE ARG TYR SER CYS SER GLY THR PHE ARG LEU ILE SEQRES 4 B 134 GLY GLU LYS SER LEU LEU CYS ILE THR LYS ASP LYS VAL SEQRES 5 B 134 ASP GLY THR TRP ASP LYS PRO ALA PRO LYS CYS GLU TYR SEQRES 6 B 134 PHE ASN LYS TYR SER SER CYS PRO GLU PRO ILE VAL PRO SEQRES 7 B 134 GLY GLY TYR LYS ILE ARG GLY SER THR PRO TYR ARG HIS SEQRES 8 B 134 GLY ASP SER VAL THR PHE ALA CYS LYS THR ASN PHE SER SEQRES 9 B 134 MET ASN GLY ASN LYS SER VAL TRP CYS GLN ALA ASN ASN SEQRES 10 B 134 MET TRP GLY PRO THR ARG LEU PRO THR CYS VAL SER VAL SEQRES 11 B 134 PHE PRO LEU GLU SEQRES 1 C 134 ALA ILE SER CYS GLY SER PRO PRO PRO ILE LEU ASN GLY SEQRES 2 C 134 ARG ILE SER TYR TYR SER THR PRO ILE ALA VAL GLY THR SEQRES 3 C 134 VAL ILE ARG TYR SER CYS SER GLY THR PHE ARG LEU ILE SEQRES 4 C 134 GLY GLU LYS SER LEU LEU CYS ILE THR LYS ASP LYS VAL SEQRES 5 C 134 ASP GLY THR TRP ASP LYS PRO ALA PRO LYS CYS GLU TYR SEQRES 6 C 134 PHE ASN LYS TYR SER SER CYS PRO GLU PRO ILE VAL PRO SEQRES 7 C 134 GLY GLY TYR LYS ILE ARG GLY SER THR PRO TYR ARG HIS SEQRES 8 C 134 GLY ASP SER VAL THR PHE ALA CYS LYS THR ASN PHE SER SEQRES 9 C 134 MET ASN GLY ASN LYS SER VAL TRP CYS GLN ALA ASN ASN SEQRES 10 C 134 MET TRP GLY PRO THR ARG LEU PRO THR CYS VAL SER VAL SEQRES 11 C 134 PHE PRO LEU GLU HET ZN A 802 1 HET NDG B 702 15 HET ZN B 801 1 HET NDG C 701 15 HETNAM ZN ZINC ION HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE FORMUL 4 ZN 2(ZN 2+) FORMUL 5 NDG 2(C8 H15 N O6) FORMUL 8 HOH *666(H2 O) HELIX 1 1 ASP A 3 HIS A 9 1 7 HELIX 2 2 GLU A 19 GLU A 39 1 21 HELIX 3 3 GLN A 40 GLY A 45 1 6 HELIX 4 4 LYS A 48 ALA A 65 1 18 HELIX 5 5 SER A 82 VAL A 97 1 16 HELIX 6 6 ASP A 103 GLN A 119 1 17 HELIX 7 7 HIS A 133 GLY A 138 5 6 HELIX 8 8 ILE A 137 ASN A 142 5 6 HELIX 9 9 GLU A 145 GLU A 166 1 22 HELIX 10 10 SER A 171 TYR A 187 1 17 HELIX 11 11 MET A 188 LEU A 190 5 3 HELIX 12 12 ARG A 192 MET A 206 1 15 HELIX 13 13 LYS A 210 ALA A 221 1 12 HELIX 14 14 ASP A 223 ASN A 225 5 3 HELIX 15 15 TYR A 235 LYS A 251 1 17 HELIX 16 16 PHE A 255 GLN A 266 1 12 HELIX 17 17 SER A 275 ALA A 293 1 19 HELIX 18 18 PRO A 294 ASP A 296 5 3 SHEET 1 A 2 SER B 3 CYS B 4 0 SHEET 2 A 2 ILE B 22 ALA B 23 -1 O ILE B 22 N CYS B 4 SHEET 1 B 4 GLY B 13 ILE B 15 0 SHEET 2 B 4 VAL B 27 CYS B 32 -1 O SER B 31 N ARG B 14 SHEET 3 B 4 SER B 43 ILE B 47 -1 O LEU B 44 N ILE B 28 SHEET 4 B 4 THR B 55 TRP B 56 -1 O THR B 55 N ILE B 47 SHEET 1 C 2 PHE B 36 ILE B 39 0 SHEET 2 C 2 LYS B 62 TYR B 65 -1 O LYS B 62 N ILE B 39 SHEET 1 D 3 GLY B 80 ARG B 84 0 SHEET 2 D 3 SER B 94 CYS B 99 -1 O THR B 96 N ILE B 83 SHEET 3 D 3 SER B 110 TRP B 112 -1 O VAL B 111 N VAL B 95 SHEET 1 E 2 SER B 104 ASN B 106 0 SHEET 2 E 2 THR B 126 VAL B 128 -1 N THR B 126 O ASN B 106 SHEET 1 F 2 SER C 3 CYS C 4 0 SHEET 2 F 2 ILE C 22 ALA C 23 -1 O ILE C 22 N CYS C 4 SHEET 1 G 4 GLY C 13 ILE C 15 0 SHEET 2 G 4 VAL C 27 CYS C 32 -1 O SER C 31 N ARG C 14 SHEET 3 G 4 SER C 43 ILE C 47 -1 O LEU C 44 N ILE C 28 SHEET 4 G 4 THR C 55 TRP C 56 -1 N THR C 55 O ILE C 47 SHEET 1 H 2 PHE C 36 ILE C 39 0 SHEET 2 H 2 LYS C 62 TYR C 65 -1 O LYS C 62 N ILE C 39 SHEET 1 I 2 SER C 71 CYS C 72 0 SHEET 2 I 2 TYR C 89 ARG C 90 -1 O TYR C 89 N CYS C 72 SHEET 1 J 3 GLY C 80 ARG C 84 0 SHEET 2 J 3 SER C 94 CYS C 99 -1 O THR C 96 N ILE C 83 SHEET 3 J 3 SER C 110 TRP C 112 -1 N VAL C 111 O VAL C 95 SHEET 1 K 2 PHE C 103 ASN C 106 0 SHEET 2 K 2 THR C 126 SER C 129 -1 O THR C 126 N ASN C 106 SSBOND 1 CYS A 108 CYS A 165 1555 1555 2.04 SSBOND 2 CYS B 4 CYS B 46 1555 1555 2.03 SSBOND 3 CYS B 32 CYS B 63 1555 1555 2.02 SSBOND 4 CYS B 72 CYS B 113 1555 1555 2.04 SSBOND 5 CYS B 99 CYS B 127 1555 1555 2.03 SSBOND 6 CYS C 4 CYS C 46 1555 1555 2.04 SSBOND 7 CYS C 32 CYS C 63 1555 1555 2.01 SSBOND 8 CYS C 72 CYS C 113 1555 1555 2.04 SSBOND 9 CYS C 99 CYS C 127 1555 1555 2.02 LINK OE2 GLU A 117 ZN ZN A 802 1555 1555 2.58 LINK OE1 GLU A 117 ZN ZN A 802 1555 1555 2.40 LINK ZN ZN A 802 O HOH A1108 1555 1555 2.35 LINK ZN ZN A 802 O HOH B 922 1555 1555 2.44 CISPEP 1 THR B 20 PRO B 21 0 0.44 CISPEP 2 THR B 87 PRO B 88 0 -0.49 CISPEP 3 THR C 20 PRO C 21 0 4.17 CISPEP 4 THR C 87 PRO C 88 0 -0.24 CISPEP 5 LEU C 133 GLU C 134 0 27.21 CRYST1 170.000 170.000 174.000 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005882 0.003396 0.000000 0.00000 SCALE2 0.000000 0.006792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005747 0.00000