HEADER SRC HOMOLOGY 2 DOMAIN 05-AUG-96 1GHU TITLE NMR SOLUTION STRUCTURE OF GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 TITLE 2 (GRB2) SH2 DOMAIN, 24 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-KT KEYWDS SRC HOMOLOGY 2 DOMAIN, GRB2, SH2 EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR K.H.THORNTON,W.T.MUELLER,P.MCCONNELL,G.ZHU,A.R.SALTIEL,V.THANABAL REVDAT 4 23-FEB-22 1GHU 1 REMARK REVDAT 3 24-FEB-09 1GHU 1 VERSN REVDAT 2 01-APR-03 1GHU 1 JRNL REVDAT 1 27-JAN-97 1GHU 0 JRNL AUTH K.H.THORNTON,W.T.MUELLER,P.MCCONNELL,G.ZHU,A.R.SALTIEL, JRNL AUTH 2 V.THANABAL JRNL TITL NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE GROWTH JRNL TITL 2 FACTOR RECEPTOR-BOUND PROTEIN 2 SRC HOMOLOGY 2 DOMAIN. JRNL REF BIOCHEMISTRY V. 35 11852 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8794768 JRNL DOI 10.1021/BI952615S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII REMARK 3 AUTHORS : BIOSYM TECHNOLOGIES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GHU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173579. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-24 REMARK 465 RES C SSSEQI REMARK 465 GLN A 153 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 GLN A 156 REMARK 465 GLN A 157 REMARK 465 PRO A 158 REMARK 465 GLU A 159 REMARK 465 PHE A 160 REMARK 465 ILE A 161 REMARK 465 VAL A 162 REMARK 465 THR A 163 REMARK 465 ASP A 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 HIS A 107 CG HIS A 107 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 HIS A 79 ND1 - CE1 - NE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 1 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 HIS A 107 ND1 - CE1 - NE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 1 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 HIS A 135 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 1 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 HIS A 79 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 2 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 PHE A 101 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 2 HIS A 107 ND1 - CE1 - NE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 2 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 HIS A 135 ND1 - CE1 - NE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 2 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 HIS A 79 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 3 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 HIS A 107 ND1 - CE1 - NE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 3 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 HIS A 135 ND1 - CE1 - NE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 3 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 HIS A 79 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 4 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 HIS A 107 ND1 - CE1 - NE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 4 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 HIS A 135 ND1 - CE1 - NE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 4 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 5 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 HIS A 79 ND1 - CE1 - NE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 5 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 HIS A 107 ND1 - CE1 - NE2 ANGL. DEV. = 8.9 DEGREES REMARK 500 5 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 HIS A 135 ND1 - CE1 - NE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 5 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 243 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 90 -34.11 103.39 REMARK 500 1 ALA A 115 -94.25 -89.03 REMARK 500 1 TRP A 121 -74.07 -92.03 REMARK 500 1 VAL A 122 -64.98 -147.24 REMARK 500 1 ASN A 143 -77.71 -160.32 REMARK 500 2 PHE A 62 -87.27 -116.49 REMARK 500 2 LYS A 64 73.42 67.14 REMARK 500 2 SER A 90 -22.21 84.98 REMARK 500 2 PHE A 101 -140.03 -89.23 REMARK 500 2 ASN A 103 58.72 -140.04 REMARK 500 2 ALA A 115 -79.15 78.53 REMARK 500 2 VAL A 122 -90.68 60.75 REMARK 500 3 TRP A 60 -44.35 -156.59 REMARK 500 3 PHE A 62 -71.91 -118.83 REMARK 500 3 LYS A 64 71.03 63.35 REMARK 500 3 ALA A 115 -83.11 -86.62 REMARK 500 3 TRP A 121 -86.17 -84.04 REMARK 500 3 VAL A 122 -61.02 -139.88 REMARK 500 3 ASN A 129 -58.56 167.32 REMARK 500 3 ARG A 142 -66.64 91.88 REMARK 500 4 LYS A 64 69.68 66.85 REMARK 500 4 GLU A 89 -72.00 74.45 REMARK 500 4 ASN A 103 45.38 -149.31 REMARK 500 4 ASP A 113 -65.42 -100.64 REMARK 500 4 LEU A 120 -61.63 -104.77 REMARK 500 4 TRP A 121 -82.04 -83.90 REMARK 500 4 VAL A 122 -58.78 -136.67 REMARK 500 5 SER A 59 115.27 75.39 REMARK 500 5 PHE A 62 -73.88 -105.60 REMARK 500 5 LYS A 64 -13.15 76.32 REMARK 500 5 GLU A 89 -89.78 72.65 REMARK 500 5 SER A 90 61.46 -152.55 REMARK 500 5 ALA A 115 -78.98 -88.72 REMARK 500 5 TRP A 121 -71.34 -76.82 REMARK 500 5 VAL A 122 -52.41 -156.47 REMARK 500 6 TRP A 60 -47.15 -130.71 REMARK 500 6 PHE A 62 -92.50 -99.84 REMARK 500 6 LYS A 64 69.97 64.69 REMARK 500 6 ASN A 103 -18.90 75.23 REMARK 500 6 ALA A 115 -84.14 -84.60 REMARK 500 6 TRP A 121 -84.74 -83.57 REMARK 500 6 VAL A 122 -55.97 -141.02 REMARK 500 6 ARG A 142 -78.79 86.65 REMARK 500 7 PHE A 62 -80.03 -121.30 REMARK 500 7 ASN A 103 -13.35 70.76 REMARK 500 7 ALA A 115 -70.37 -82.29 REMARK 500 7 LEU A 120 -32.88 -134.67 REMARK 500 7 TRP A 121 -76.60 -114.19 REMARK 500 7 VAL A 122 -73.57 -130.05 REMARK 500 7 SER A 141 -113.25 -105.94 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 PHE A 83 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1GHU A 60 158 UNP P62993 GRB2_HUMAN 60 158 SEQRES 1 A 107 GLY SER TRP PHE PHE GLY LYS ILE PRO ARG ALA LYS ALA SEQRES 2 A 107 GLU GLU MET LEU SER LYS GLN ARG HIS ASP GLY ALA PHE SEQRES 3 A 107 LEU ILE ARG GLU SER GLU SER ALA PRO GLY ASP PHE SER SEQRES 4 A 107 LEU SER VAL LYS PHE GLY ASN ASP VAL GLN HIS PHE LYS SEQRES 5 A 107 VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE LEU TRP VAL SEQRES 6 A 107 VAL LYS PHE ASN SER LEU ASN GLU LEU VAL ASP TYR HIS SEQRES 7 A 107 ARG SER THR SER VAL SER ARG ASN GLN GLN ILE PHE LEU SEQRES 8 A 107 ARG ASP ILE GLU GLN VAL PRO GLN GLN PRO GLU PHE ILE SEQRES 9 A 107 VAL THR ASP HELIX 1 1 ARG A 67 LYS A 76 1 10 HELIX 2 2 LEU A 128 HIS A 135 1 8 SHEET 1 A 3 PHE A 83 GLU A 87 0 SHEET 2 A 3 PHE A 95 PHE A 101 -1 N SER A 98 O LEU A 84 SHEET 3 A 3 ASP A 104 VAL A 110 -1 N VAL A 110 O PHE A 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1