HEADER OXIDOREDUCTASE 03-AUG-01 1GJX TITLE SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE CHIMERIC DIHYDROLIPOYL TITLE 2 DEHYDROGENASE P64K FROM NEISSERIA MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIPOYL DOMAIN RESIDUES 2-82; COMPND 5 SYNONYM: LIPOAMIDE DEHYDROGENASE, E3 COMPONENT; COMPND 6 EC: 1.8.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PM-143 KEYWDS OXIDOREDUCTASE, LIPOYL DOMAIN, DIHYDROLIPOYL DEHYDROGENASE, KEYWDS 2 MULTIENZYME COMPLEX, NEISSERIA MENINGITIDIS, POST-TRANSLATIONAL KEYWDS 3 MODIFICATION EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR K.TOZAWA,R.W.BROADHURST,A.R.C.RAINE,C.FULLER,A.ALVAREZ,G.GUILLEN, AUTHOR 2 G.PADRON,R.N.PERHAM REVDAT 3 15-MAY-24 1GJX 1 REMARK REVDAT 2 24-FEB-09 1GJX 1 VERSN REVDAT 1 28-NOV-01 1GJX 0 JRNL AUTH K.TOZAWA,R.W.BROADHURST,A.R.RAINE,C.FULLER,A.ALVAREZ, JRNL AUTH 2 G.GUILLEN,G.PADRON,R.N.PERHAM JRNL TITL SOLUTION STRUCTURE OF THE LIPOYL DOMAIN OF THE CHIMERIC JRNL TITL 2 DIHYDROLIPOYL DEHYDROGENASE P64K FROM NEISSERIA MENINGITIDIS JRNL REF EUR.J.BIOCHEM. V. 268 4908 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11559360 JRNL DOI 10.1046/J.0014-2956.2001.02422.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1GJX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1290008427. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; TOCSY; HNCA; HN REMARK 210 (CO)CA; 15N NOESY-HSQC; 15N- REMARK 210 TOCSY-HSQC; HCCH-TOCSY; 13C- REMARK 210 NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, ANSIG REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS, LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED LIPOYL DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 35 O VAL A 47 1.52 REMARK 500 H LYS A 56 O VAL A 74 1.56 REMARK 500 H LEU A 5 O VAL A 73 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 172.50 56.59 REMARK 500 1 LEU A 5 -176.01 -51.87 REMARK 500 1 PRO A 8 -167.05 -72.70 REMARK 500 1 HIS A 13 -85.71 175.06 REMARK 500 1 GLU A 22 47.72 -140.09 REMARK 500 1 VAL A 25 112.19 65.40 REMARK 500 1 VAL A 31 48.54 -86.03 REMARK 500 1 ASP A 32 73.89 163.65 REMARK 500 1 THR A 40 -89.58 -132.55 REMARK 500 1 ASP A 41 21.68 -150.26 REMARK 500 1 LYS A 42 -43.44 -134.71 REMARK 500 1 ALA A 49 150.05 59.67 REMARK 500 1 VAL A 51 -178.83 -178.33 REMARK 500 1 VAL A 58 119.68 -165.37 REMARK 500 1 LYS A 61 -159.93 -170.97 REMARK 500 1 GLU A 68 115.66 -39.57 REMARK 500 1 LEU A 71 95.45 49.06 REMARK 500 1 ILE A 72 -74.86 -95.20 REMARK 500 1 ALA A 77 138.04 57.12 REMARK 500 1 GLU A 78 39.82 39.27 REMARK 500 2 PRO A 8 -169.36 -75.37 REMARK 500 2 ASN A 15 94.95 46.01 REMARK 500 2 GLU A 22 59.48 -146.41 REMARK 500 2 VAL A 31 47.68 -87.96 REMARK 500 2 ASP A 32 70.45 166.61 REMARK 500 2 THR A 40 -59.26 -121.28 REMARK 500 2 ASP A 41 -38.39 -172.68 REMARK 500 2 MET A 45 -164.54 -117.25 REMARK 500 2 ALA A 49 106.16 56.10 REMARK 500 2 GLU A 50 70.69 -110.60 REMARK 500 2 ALA A 52 63.77 -160.59 REMARK 500 2 VAL A 60 148.55 -173.58 REMARK 500 2 GLU A 68 95.20 -42.90 REMARK 500 2 ILE A 72 -85.74 -48.07 REMARK 500 2 ALA A 77 147.05 56.73 REMARK 500 2 GLU A 78 49.32 39.54 REMARK 500 3 LEU A 2 176.86 -49.90 REMARK 500 3 PRO A 8 -166.17 -76.38 REMARK 500 3 ASN A 15 95.51 44.89 REMARK 500 3 GLU A 22 40.09 -146.30 REMARK 500 3 VAL A 25 117.51 62.72 REMARK 500 3 VAL A 31 42.45 -89.94 REMARK 500 3 ASP A 32 72.84 163.70 REMARK 500 3 THR A 40 -82.92 -133.03 REMARK 500 3 ASP A 41 -43.48 -143.79 REMARK 500 3 ALA A 43 133.64 -175.65 REMARK 500 3 MET A 45 -167.95 -117.29 REMARK 500 3 PRO A 48 33.35 -89.64 REMARK 500 3 ALA A 49 163.93 56.57 REMARK 500 3 GLU A 50 44.83 -157.76 REMARK 500 REMARK 500 THIS ENTRY HAS 360 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1GJX A 1 81 UNP Q9JZ09 Q9JZ09 2 82 SEQRES 1 A 81 ALA LEU VAL GLU LEU LYS VAL PRO ASP ILE GLY GLY HIS SEQRES 2 A 81 GLU ASN VAL ASP ILE ILE ALA VAL GLU VAL ASN VAL GLY SEQRES 3 A 81 ASP THR ILE ALA VAL ASP ASP THR LEU ILE THR LEU GLU SEQRES 4 A 81 THR ASP LYS ALA THR MET ASP VAL PRO ALA GLU VAL ALA SEQRES 5 A 81 GLY VAL VAL LYS GLU VAL LYS VAL LYS VAL GLY ASP LYS SEQRES 6 A 81 ILE SER GLU GLY GLY LEU ILE VAL VAL VAL GLU ALA GLU SEQRES 7 A 81 GLY THR ALA SHEET 1 AA 4 LEU A 2 LYS A 6 0 SHEET 2 AA 4 ILE A 72 ALA A 77 -1 O VAL A 75 N VAL A 3 SHEET 3 AA 4 LYS A 56 LYS A 61 -1 O GLU A 76 N LYS A 56 SHEET 4 AA 4 ASP A 27 ALA A 30 -1 O LYS A 56 N ASP A 27 SHEET 1 AB 4 ALA A 43 VAL A 47 0 SHEET 2 AB 4 LEU A 35 THR A 40 -1 O ILE A 36 N VAL A 47 SHEET 3 AB 4 ILE A 18 VAL A 21 -1 O ASP A 17 N GLU A 39 SHEET 4 AB 4 ASP A 64 SER A 67 -1 O ILE A 66 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1