HEADER HYDROLASE/HYDROLASE INHIBITOR 10-AUG-01 1GKC TITLE MMP9-INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 92 KDA TYPE IV COLLAGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 107-215,391-443; COMPND 5 SYNONYM: MMP-9,92 KDA GELATINASE, GELATINASE B, MATRIX COMPND 6 METALLOPROTEINASE-9; COMPND 7 EC: 3.4.24.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MATRIX METALLOPROTEASE, HYDROLASE, GLYCOPROTEIN, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ROWSELL,R.A.PAUPTIT REVDAT 4 13-DEC-23 1GKC 1 REMARK LINK REVDAT 3 13-JUL-11 1GKC 1 VERSN REVDAT 2 24-FEB-09 1GKC 1 VERSN REVDAT 1 16-MAY-02 1GKC 0 JRNL AUTH S.ROWSELL,P.HAWTIN,C.A.MINSHULL,H.JEPSON,S.BROCKBANK, JRNL AUTH 2 D.BARRATT,A.M.SLATER,W.MCPHEAT,D.WATERSON,A.HENNEY, JRNL AUTH 3 R.A.PAUPTIT JRNL TITL CRYSTAL STRUCTURE OF MMP9 IN COMPLEX WITH A REVERSE JRNL TITL 2 HYDROXAMATE INHIBITOR JRNL REF J.MOL.BIOL. V. 319 173 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12051944 JRNL DOI 10.1016/S0022-2836(02)00262-0 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 17375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1517 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 68 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.43000 REMARK 3 B22 (A**2) : -5.43000 REMARK 3 B33 (A**2) : 10.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.710 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.710 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 47.85 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.09 ; 50 REMARK 3 GROUP 1 B-FACTOR (A**2) : 2.6 ; 2.0 REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : FRA.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FRA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR, CNS REMARK 4 REMARK 4 1GKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1290008443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : SILICON MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 51.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : 0.47900 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALLISATION DROPS CONTAINED A REMARK 280 1:1 MIXTURE OF PURIFIED COMPLEX SOLUTION (0.55 MG/ML PROTEIN AND REMARK 280 0.5 MM INHIBITOR SOLUTION CONCENTRATED TO ~4 MG/ML IN 20 MM TRIS- REMARK 280 HCL PH 7.5, 2 MM CACL2, 50 MM NACL) AND RESERVOIR BUFFER (3.6 M REMARK 280 NACL, 0.1 M HEPES PH 7.5)., PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.32750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.00250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.00250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.66375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.00250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.00250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 196.99125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.00250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.00250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.66375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.00250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.00250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 196.99125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.32750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 106 REMARK 465 PHE A 107 REMARK 465 GLN A 108 REMARK 465 THR A 109 REMARK 465 MET B 106 REMARK 465 PHE B 107 REMARK 465 GLN B 108 REMARK 465 THR B 109 REMARK 465 PHE B 110 REMARK 465 GLU B 111 REMARK 465 GLY B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 424 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 173 -129.16 52.07 REMARK 500 HIS A 175 28.96 -141.50 REMARK 500 ASP A 177 -164.75 -74.70 REMARK 500 ASP A 185 -173.11 55.53 REMARK 500 SER A 211 -156.62 -148.73 REMARK 500 PRO A 421 -3.96 -58.90 REMARK 500 ALA B 173 -129.37 50.24 REMARK 500 ASP B 177 -162.50 -71.71 REMARK 500 ASP B 185 -178.06 61.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1446 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 43.8 REMARK 620 3 ASP A 206 O 153.8 161.9 REMARK 620 4 ASP A 206 OD1 109.4 98.9 72.7 REMARK 620 5 GLU A 208 O 113.3 78.0 89.5 108.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1452 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 149 O REMARK 620 2 HOH A2021 O 72.3 REMARK 620 3 HOH A2022 O 54.7 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1445 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 O REMARK 620 2 GLY A 197 O 171.8 REMARK 620 3 GLN A 199 O 96.0 79.8 REMARK 620 4 ASP A 201 OD1 88.2 99.0 92.7 REMARK 620 5 HOH A2028 O 94.0 89.1 166.0 97.5 REMARK 620 6 HOH A2039 O 79.2 92.8 74.9 161.1 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 ASP A 177 OD2 102.3 REMARK 620 3 HIS A 190 NE2 120.6 119.2 REMARK 620 4 HIS A 203 ND1 108.2 88.0 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1444 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 GLY A 183 O 83.8 REMARK 620 3 ASP A 185 O 71.1 78.2 REMARK 620 4 LEU A 187 O 86.1 169.9 98.0 REMARK 620 5 ASP A 205 OD2 95.3 82.7 157.6 98.7 REMARK 620 6 GLU A 208 OE2 146.1 108.7 80.6 79.6 117.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1447 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 211 OG REMARK 620 2 LEU A 212 O 76.6 REMARK 620 3 GLY A 213 O 134.1 71.1 REMARK 620 4 LYS A 214 O 141.1 93.9 73.7 REMARK 620 5 HOH A2047 O 60.2 128.5 160.3 102.5 REMARK 620 6 HOH A2050 O 90.3 104.6 68.1 128.4 102.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 401 NE2 REMARK 620 2 HIS A 405 NE2 101.9 REMARK 620 3 HIS A 411 NE2 107.2 92.6 REMARK 620 4 NFH A1448 ON 119.9 137.0 84.8 REMARK 620 5 NFH A1448 OM 108.2 86.6 144.0 71.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1446 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD2 REMARK 620 2 ASP B 131 OD1 42.4 REMARK 620 3 ASP B 206 OD1 97.0 107.7 REMARK 620 4 ASP B 206 O 165.5 148.0 71.0 REMARK 620 5 GLU B 208 O 81.1 113.8 111.2 95.4 REMARK 620 6 HOH B2011 O 106.4 65.0 93.2 83.0 153.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1448 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 149 O REMARK 620 2 THR B 152 O 56.0 REMARK 620 3 HOH B2021 O 89.0 111.4 REMARK 620 4 HOH B2022 O 61.2 63.3 147.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1445 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 165 O REMARK 620 2 GLY B 197 O 171.2 REMARK 620 3 GLN B 199 O 101.1 82.4 REMARK 620 4 ASP B 201 OD1 90.6 97.0 98.0 REMARK 620 5 HOH B2030 O 88.4 86.4 163.5 95.3 REMARK 620 6 HOH B2041 O 80.4 92.2 81.0 170.6 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1452 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 175 NE2 REMARK 620 2 ASP B 177 OD2 105.6 REMARK 620 3 HIS B 190 NE2 114.2 111.9 REMARK 620 4 HIS B 203 ND1 118.0 91.2 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1444 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD1 REMARK 620 2 GLY B 183 O 82.9 REMARK 620 3 ASP B 185 O 74.6 74.7 REMARK 620 4 LEU B 187 O 91.0 173.9 104.0 REMARK 620 5 ASP B 205 OD2 95.2 79.0 152.8 101.3 REMARK 620 6 GLU B 208 OE2 151.1 103.5 79.9 82.0 113.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1447 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 211 OG REMARK 620 2 LEU B 212 O 81.0 REMARK 620 3 GLY B 213 O 145.1 75.4 REMARK 620 4 LYS B 214 O 135.4 90.9 71.0 REMARK 620 5 HOH B2052 O 60.8 120.4 154.1 87.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 401 NE2 REMARK 620 2 HIS B 405 NE2 101.4 REMARK 620 3 HIS B 411 NE2 104.0 95.5 REMARK 620 4 NFH B1449 ON 118.7 138.6 84.8 REMARK 620 5 NFH B1449 OM 110.9 87.6 143.5 69.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1445 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NFH A 1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1445 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1447 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1448 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NFH B 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1452 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE INITIAL METHIONINE IN THE MATERIAL CRYSTALLISED IS A REMARK 999 CLONING ARTEFACT. DBREF 1GKC A 106 106 PDB 1GKC 1GKC 106 106 DBREF 1GKC A 107 215 UNP P14780 MM09_HUMAN 107 215 DBREF 1GKC A 391 443 UNP P14780 MM09_HUMAN 391 443 DBREF 1GKC B 106 106 PDB 1GKC 1GKC 106 106 DBREF 1GKC B 107 215 UNP P14780 MM09_HUMAN 107 215 DBREF 1GKC B 391 443 UNP P14780 MM09_HUMAN 391 443 SEQRES 1 A 163 MET PHE GLN THR PHE GLU GLY ASP LEU LYS TRP HIS HIS SEQRES 2 A 163 HIS ASN ILE THR TYR TRP ILE GLN ASN TYR SER GLU ASP SEQRES 3 A 163 LEU PRO ARG ALA VAL ILE ASP ASP ALA PHE ALA ARG ALA SEQRES 4 A 163 PHE ALA LEU TRP SER ALA VAL THR PRO LEU THR PHE THR SEQRES 5 A 163 ARG VAL TYR SER ARG ASP ALA ASP ILE VAL ILE GLN PHE SEQRES 6 A 163 GLY VAL ALA GLU HIS GLY ASP GLY TYR PRO PHE ASP GLY SEQRES 7 A 163 LYS ASP GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO SEQRES 8 A 163 GLY ILE GLN GLY ASP ALA HIS PHE ASP ASP ASP GLU LEU SEQRES 9 A 163 TRP SER LEU GLY LYS GLY GLN GLY TYR SER LEU PHE LEU SEQRES 10 A 163 VAL ALA ALA HIS GLU PHE GLY HIS ALA LEU GLY LEU ASP SEQRES 11 A 163 HIS SER SER VAL PRO GLU ALA LEU MET TYR PRO MET TYR SEQRES 12 A 163 ARG PHE THR GLU GLY PRO PRO LEU HIS LYS ASP ASP VAL SEQRES 13 A 163 ASN GLY ILE ARG HIS LEU TYR SEQRES 1 B 163 MET PHE GLN THR PHE GLU GLY ASP LEU LYS TRP HIS HIS SEQRES 2 B 163 HIS ASN ILE THR TYR TRP ILE GLN ASN TYR SER GLU ASP SEQRES 3 B 163 LEU PRO ARG ALA VAL ILE ASP ASP ALA PHE ALA ARG ALA SEQRES 4 B 163 PHE ALA LEU TRP SER ALA VAL THR PRO LEU THR PHE THR SEQRES 5 B 163 ARG VAL TYR SER ARG ASP ALA ASP ILE VAL ILE GLN PHE SEQRES 6 B 163 GLY VAL ALA GLU HIS GLY ASP GLY TYR PRO PHE ASP GLY SEQRES 7 B 163 LYS ASP GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO SEQRES 8 B 163 GLY ILE GLN GLY ASP ALA HIS PHE ASP ASP ASP GLU LEU SEQRES 9 B 163 TRP SER LEU GLY LYS GLY GLN GLY TYR SER LEU PHE LEU SEQRES 10 B 163 VAL ALA ALA HIS GLU PHE GLY HIS ALA LEU GLY LEU ASP SEQRES 11 B 163 HIS SER SER VAL PRO GLU ALA LEU MET TYR PRO MET TYR SEQRES 12 B 163 ARG PHE THR GLU GLY PRO PRO LEU HIS LYS ASP ASP VAL SEQRES 13 B 163 ASN GLY ILE ARG HIS LEU TYR HET CA A1444 1 HET CA A1445 1 HET CA A1446 1 HET CA A1447 1 HET NFH A1448 22 HET ZN A1450 1 HET ZN A1451 1 HET CA A1452 1 HET CA B1444 1 HET CA B1445 1 HET CA B1446 1 HET CA B1447 1 HET CA B1448 1 HET NFH B1449 22 HET ZN B1451 1 HET ZN B1452 1 HETNAM CA CALCIUM ION HETNAM NFH N~2~-[(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}-4- HETNAM 2 NFH METHYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE HETNAM ZN ZINC ION FORMUL 3 CA 10(CA 2+) FORMUL 7 NFH 2(C15 H29 N3 O4) FORMUL 8 ZN 4(ZN 2+) FORMUL 19 HOH *120(H2 O) HELIX 1 1 PRO A 133 ALA A 150 1 18 HELIX 2 2 LEU A 395 LEU A 407 1 13 HELIX 3 3 HIS A 432 TYR A 443 1 12 HELIX 4 4 PRO B 133 ALA B 150 1 18 HELIX 5 5 LEU B 395 LEU B 407 1 13 HELIX 6 6 HIS B 432 TYR B 443 1 12 SHEET 1 AA 5 THR A 155 ARG A 158 0 SHEET 2 AA 5 ASN A 120 ILE A 125 1 O ILE A 121 N THR A 157 SHEET 3 AA 5 ILE A 166 GLY A 171 1 O ILE A 166 N TRP A 124 SHEET 4 AA 5 ALA A 202 ASP A 205 1 O ALA A 202 N GLN A 169 SHEET 5 AA 5 ALA A 189 ALA A 191 -1 O HIS A 190 N HIS A 203 SHEET 1 AB 2 TRP A 210 SER A 211 0 SHEET 2 AB 2 TYR A 393 SER A 394 1 O TYR A 393 N SER A 211 SHEET 1 BA 5 THR B 155 ARG B 158 0 SHEET 2 BA 5 ASN B 120 ILE B 125 1 O ILE B 121 N THR B 157 SHEET 3 BA 5 ILE B 166 GLY B 171 1 O ILE B 166 N TRP B 124 SHEET 4 BA 5 ALA B 202 ASP B 205 1 O ALA B 202 N GLN B 169 SHEET 5 BA 5 ALA B 189 ALA B 191 -1 O HIS B 190 N HIS B 203 SHEET 1 BB 2 TRP B 210 SER B 211 0 SHEET 2 BB 2 TYR B 393 SER B 394 1 O TYR B 393 N SER B 211 LINK OD1 ASP A 131 CA CA A1446 1555 1555 3.14 LINK OD2 ASP A 131 CA CA A1446 1555 1555 2.60 LINK O SER A 149 CA CA A1452 1555 1555 2.97 LINK O ASP A 165 CA CA A1445 1555 1555 2.53 LINK NE2 HIS A 175 ZN ZN A1451 1555 1555 2.06 LINK OD2 ASP A 177 ZN ZN A1451 1555 1555 2.12 LINK OD1 ASP A 182 CA CA A1444 1555 1555 2.65 LINK O GLY A 183 CA CA A1444 1555 1555 2.41 LINK O ASP A 185 CA CA A1444 1555 1555 2.60 LINK O LEU A 187 CA CA A1444 1555 1555 2.51 LINK NE2 HIS A 190 ZN ZN A1451 1555 1555 2.14 LINK O GLY A 197 CA CA A1445 1555 1555 2.48 LINK O GLN A 199 CA CA A1445 1555 1555 2.64 LINK OD1 ASP A 201 CA CA A1445 1555 1555 2.62 LINK ND1 HIS A 203 ZN ZN A1451 1555 1555 2.23 LINK OD2 ASP A 205 CA CA A1444 1555 1555 2.54 LINK O ASP A 206 CA CA A1446 1555 1555 2.68 LINK OD1 ASP A 206 CA CA A1446 1555 1555 2.81 LINK OE2 GLU A 208 CA CA A1444 1555 1555 2.68 LINK O GLU A 208 CA CA A1446 1555 1555 2.69 LINK OG SER A 211 CA CA A1447 1555 1555 3.24 LINK O LEU A 212 CA CA A1447 1555 1555 2.70 LINK O GLY A 213 CA CA A1447 1555 1555 3.08 LINK O LYS A 214 CA CA A1447 1555 1555 2.74 LINK NE2 HIS A 401 ZN ZN A1450 1555 1555 2.21 LINK NE2 HIS A 405 ZN ZN A1450 1555 1555 2.23 LINK NE2 HIS A 411 ZN ZN A1450 1555 1555 2.22 LINK CA CA A1445 O HOH A2028 1555 1555 2.75 LINK CA CA A1445 O HOH A2039 1555 1555 2.82 LINK CA CA A1447 O HOH A2047 1555 1555 2.61 LINK CA CA A1447 O HOH A2050 1555 1555 2.70 LINK ON NFH A1448 ZN ZN A1450 1555 1555 2.07 LINK OM NFH A1448 ZN ZN A1450 1555 1555 2.38 LINK CA CA A1452 O HOH A2021 1555 1555 2.88 LINK CA CA A1452 O HOH A2022 1555 1555 3.04 LINK OD2 ASP B 131 CA CA B1446 1555 1555 2.53 LINK OD1 ASP B 131 CA CA B1446 1555 1555 3.22 LINK O SER B 149 CA CA B1448 1555 1555 3.19 LINK O THR B 152 CA CA B1448 1555 1555 3.19 LINK O ASP B 165 CA CA B1445 1555 1555 2.48 LINK NE2 HIS B 175 ZN ZN B1452 1555 1555 2.00 LINK OD2 ASP B 177 ZN ZN B1452 1555 1555 2.18 LINK OD1 ASP B 182 CA CA B1444 1555 1555 2.61 LINK O GLY B 183 CA CA B1444 1555 1555 2.50 LINK O ASP B 185 CA CA B1444 1555 1555 2.71 LINK O LEU B 187 CA CA B1444 1555 1555 2.38 LINK NE2 HIS B 190 ZN ZN B1452 1555 1555 2.28 LINK O GLY B 197 CA CA B1445 1555 1555 2.51 LINK O GLN B 199 CA CA B1445 1555 1555 2.47 LINK OD1 ASP B 201 CA CA B1445 1555 1555 2.61 LINK ND1 HIS B 203 ZN ZN B1452 1555 1555 2.12 LINK OD2 ASP B 205 CA CA B1444 1555 1555 2.59 LINK OD1 ASP B 206 CA CA B1446 1555 1555 2.90 LINK O ASP B 206 CA CA B1446 1555 1555 2.69 LINK OE2 GLU B 208 CA CA B1444 1555 1555 2.73 LINK O GLU B 208 CA CA B1446 1555 1555 2.53 LINK OG SER B 211 CA CA B1447 1555 1555 3.12 LINK O LEU B 212 CA CA B1447 1555 1555 2.64 LINK O GLY B 213 CA CA B1447 1555 1555 3.01 LINK O LYS B 214 CA CA B1447 1555 1555 2.89 LINK NE2 HIS B 401 ZN ZN B1451 1555 1555 2.29 LINK NE2 HIS B 405 ZN ZN B1451 1555 1555 2.15 LINK NE2 HIS B 411 ZN ZN B1451 1555 1555 2.31 LINK CA CA B1445 O HOH B2030 1555 1555 2.60 LINK CA CA B1445 O HOH B2041 1555 1555 2.75 LINK CA CA B1446 O HOH B2011 1555 1555 2.78 LINK CA CA B1447 O HOH B2052 1555 1555 2.65 LINK CA CA B1448 O HOH B2021 1555 1555 2.98 LINK CA CA B1448 O HOH B2022 1555 1555 2.89 LINK ON NFH B1449 ZN ZN B1451 1555 1555 1.98 LINK OM NFH B1449 ZN ZN B1451 1555 1555 2.54 SITE 1 AC1 6 ASP A 182 GLY A 183 ASP A 185 LEU A 187 SITE 2 AC1 6 ASP A 205 GLU A 208 SITE 1 AC2 6 ASP A 165 GLY A 197 GLN A 199 ASP A 201 SITE 2 AC2 6 HOH A2028 HOH A2039 SITE 1 AC3 3 ASP A 131 ASP A 206 GLU A 208 SITE 1 AC4 7 SER A 211 LEU A 212 GLY A 213 LYS A 214 SITE 2 AC4 7 GLY A 215 HOH A2047 HOH A2050 SITE 1 AC5 15 GLY A 186 LEU A 187 LEU A 188 ALA A 189 SITE 2 AC5 15 TYR A 393 HIS A 401 GLU A 402 HIS A 405 SITE 3 AC5 15 HIS A 411 PRO A 421 MET A 422 TYR A 423 SITE 4 AC5 15 ZN A1450 HOH A2038 HOH A2056 SITE 1 AC6 4 HIS A 401 HIS A 405 HIS A 411 NFH A1448 SITE 1 AC7 4 HIS A 175 ASP A 177 HIS A 190 HIS A 203 SITE 1 AC8 3 SER A 149 HOH A2021 HOH A2022 SITE 1 AC9 6 ASP B 182 GLY B 183 ASP B 185 LEU B 187 SITE 2 AC9 6 ASP B 205 GLU B 208 SITE 1 BC1 6 ASP B 165 GLY B 197 GLN B 199 ASP B 201 SITE 2 BC1 6 HOH B2030 HOH B2041 SITE 1 BC2 4 ASP B 131 ASP B 206 GLU B 208 HOH B2011 SITE 1 BC3 6 SER B 211 LEU B 212 GLY B 213 LYS B 214 SITE 2 BC3 6 GLN B 391 HOH B2052 SITE 1 BC4 4 SER B 149 THR B 152 HOH B2021 HOH B2022 SITE 1 BC5 14 GLY B 186 LEU B 187 LEU B 188 ALA B 189 SITE 2 BC5 14 TYR B 393 HIS B 401 GLU B 402 HIS B 405 SITE 3 BC5 14 HIS B 411 TYR B 420 PRO B 421 MET B 422 SITE 4 BC5 14 TYR B 423 ZN B1451 SITE 1 BC6 4 HIS B 401 HIS B 405 HIS B 411 NFH B1449 SITE 1 BC7 4 HIS B 175 ASP B 177 HIS B 190 HIS B 203 CRYST1 56.005 56.005 262.655 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017856 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003807 0.00000 MTRIX1 1 -0.228610 -0.962500 0.146040 68.09161 1 MTRIX2 1 -0.957770 0.195490 -0.210850 96.29951 1 MTRIX3 1 0.174400 -0.188080 -0.966550 249.65909 1