HEADER TRANSPORT(THYROXINE) 17-AUG-01 1GKO TITLE AN ENGINEERED TRANSTHYRETIN MONOMER THAT IS NON-AMYLOIDOGENIC - UNLESS TITLE 2 PARTIALLY DENATURED COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TBPA, TTR, ATTR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORT(THYROXINE), TRANSTHYRETIN, TTR, MUTANT MONOMER KEYWDS 2 TRANSTHYRETIN, MUTANT MONOMER TTR, AMYLOID FORMING PROTEIN, AMYLOID EXPDTA X-RAY DIFFRACTION AUTHOR X.JIANG,C.S.SMITH,H.M.PETRASSI,P.HAMMARSTROM,J.T.WHITE, AUTHOR 2 J.C.SACCHETTINI,J.W.KELLY REVDAT 5 13-DEC-23 1GKO 1 REMARK REVDAT 4 17-JUL-19 1GKO 1 REMARK REVDAT 3 24-FEB-09 1GKO 1 VERSN REVDAT 2 04-JAN-02 1GKO 1 DBREF REVDAT 1 28-NOV-01 1GKO 0 JRNL AUTH X.JIANG,C.S.SMITH,H.M.PETRASSI,P.HAMMARSTROM,J.T.WHITE, JRNL AUTH 2 J.C.SACCHETTINI,J.W.KELLY JRNL TITL AN ENGINEERED TRANSTHYRETIN MONOMER THAT IS JRNL TITL 2 NONAMYLOIDOGENIC, UNLESS IT IS PARTIALLY DENATURED JRNL REF BIOCHEMISTRY V. 40 11442 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11560492 JRNL DOI 10.1021/BI011194D REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.17000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 9.26700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.204 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.796 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.177 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.113 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1290008484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 8.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 27.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1BMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS BUFFER, PH REMARK 280 8.5, 30% W/V POLYETHYLENE GLYCOL 4000, PH 8.80, MICROBATCH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.36450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.06300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.65050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.06300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.36450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.65050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 32.36450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 41.65050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 86.12600 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A, B, C, D ENGINEERED MUTATION PHE87MET AND LEU130MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 ASN B 124 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 LYS C 9 REMARK 465 PRO C 125 REMARK 465 LYS C 126 REMARK 465 GLU C 127 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 LYS D 9 REMARK 465 ASN D 124 REMARK 465 PRO D 125 REMARK 465 LYS D 126 REMARK 465 GLU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 -38.30 -29.08 REMARK 500 ASP A 38 -115.35 -66.01 REMARK 500 ASP A 39 33.51 -157.21 REMARK 500 HIS B 90 154.23 179.74 REMARK 500 ASP C 38 -105.33 -67.28 REMARK 500 ASP C 39 15.62 -156.32 REMARK 500 HIS D 90 -165.31 -175.34 REMARK 500 ASN D 98 18.48 58.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BM7 RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (PREALBUMIN) COMPLEX WITH FLUFENAMIC ACID (2- REMARK 900 [[3-(TRIFLUOROMETHYL)PHENYL ]AMINO] BENZOIC ACID) REMARK 900 RELATED ID: 1BMZ RELATED DB: PDB REMARK 900 HUMAN TRANSTHYRETIN (PREALBUMIN) REMARK 900 RELATED ID: 1BZ8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (DEL VAL122) REMARK 900 RELATED ID: 1BZD RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1BZE RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1E3F RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 1E4H RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 1E5A RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 1ETA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (PREALBUMIN) NATURALLY OCCURRING VARIANT WITH 1:1 MIX REMARK 900 OF VAL AND MET AT POSITION 30 COMPLEXED WITH THYROXINE (3,5 ,3',5'- REMARK 900 TETRAIODO-L-THYRONINE) REMARK 900 RELATED ID: 1ETB RELATED DB: PDB REMARK 900 TRANSTHYRETIN (PREALBUMIN) MUTANT WITH ALA 109 REPLACED BY THR REMARK 900 (A109T) COMPLEXED WITH THYROXINE (3,5,3',5'-TETRAIODO-L-THYRONINE) REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN AT 1.5A RESOLUTION REMARK 900 RELATED ID: 1F64 RELATED DB: PDB REMARK 900 LEU55PRO TTR-IDOX THEORETICAL MODEL REMARK 900 RELATED ID: 1F86 RELATED DB: PDB REMARK 900 TRANSTHYRETIN THR119MET PROTEIN STABILISATION REMARK 900 RELATED ID: 1FH2 RELATED DB: PDB REMARK 900 TRANSTHYRETIN STABILITY AS A KEY FACTOR IN AMYLOIDOGENESIS REMARK 900 RELATED ID: 1FHN RELATED DB: PDB REMARK 900 TRANSTHYRETIN STABILITY AS A KEY FACTOR IN AMYLOIDOGENESIS REMARK 900 RELATED ID: 1RLB RELATED DB: PDB REMARK 900 RETINOL BINDING PROTEIN COMPLEXED WITH TRANSTHYRETIN 1RLB 3 REMARK 900 RELATED ID: 1THA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3,3'-DIIODO-L- REMARK 900 THYRONINE REMARK 900 RELATED ID: 1THC RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5'-DIBROMO-2' REMARK 900 ,4,4',6-TETRA- HYDROXYAURONE REMARK 900 RELATED ID: 1TLM RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH MILRINONE REMARK 900 RELATED ID: 1TSH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1TTA RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) REMARK 900 RELATED ID: 1TTB RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) MUTANT WITH ALA 109 REPLACED BY REMARK 900 THR (A109T) REMARK 900 RELATED ID: 1TTC RELATED DB: PDB REMARK 900 TRANSTHYRETIN (FORMERLY PREALBUMIN) MUTANT WITH VAL 30 REPLACED BY REMARK 900 MET (V30M) REMARK 900 RELATED ID: 1TTR RELATED DB: PDB REMARK 900 TRANSTHYRETIN - V/122/I CARDIOMYOPATHIC MUTANT REMARK 900 RELATED ID: 1TYR RELATED DB: PDB REMARK 900 TRANSTHYRETIN COMPLEX WITH RETINOIC ACID REMARK 900 RELATED ID: 2PAB RELATED DB: PDB REMARK 900 PREALBUMIN (HUMAN PLASMA) REMARK 900 RELATED ID: 2ROX RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH THYROXINE (T4) REMARK 900 RELATED ID: 2ROY RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5'-DINITRO-N- REMARK 900 ACETYL-L-THYRONINE REMARK 900 RELATED ID: 2TRH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 2TRY RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 5TTR RELATED DB: PDB REMARK 900 LEU 55 PRO TRANSTHYRETIN CRYSTAL STRUCTURE DBREF 1GKO A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1GKO B 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1GKO C 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1GKO D 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 1GKO MET A 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 1GKO MET A 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1GKO MET B 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 1GKO MET B 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1GKO MET C 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 1GKO MET C 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1GKO MET D 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 1GKO MET D 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 C 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 C 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 C 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 C 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 C 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 C 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 C 127 TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS ALA SEQRES 8 C 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 C 127 TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SER SEQRES 10 C 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 D 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 D 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 D 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 D 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 D 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 D 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 D 127 TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS ALA SEQRES 8 D 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 D 127 TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SER SEQRES 10 D 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU FORMUL 5 HOH *198(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 HELIX 3 3 ASP C 74 ALA C 81 1 8 HELIX 4 4 ASP D 74 ALA D 81 1 8 SHEET 1 AA 7 SER A 23 PRO A 24 0 SHEET 2 AA 7 LEU A 12 ASP A 18 -1 O ASP A 18 N SER A 23 SHEET 3 AA 7 ARG A 104 SER A 112 1 O TYR A 105 N MET A 13 SHEET 4 AA 7 SER A 115 THR A 123 -1 O SER A 115 N SER A 112 SHEET 5 AA 7 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA 7 ARG B 104 SER B 112 -1 O ARG B 104 N THR B 123 SHEET 7 AA 7 LEU B 12 ASP B 18 1 O MET B 13 N ILE B 107 SHEET 1 AB 3 SER A 23 PRO A 24 0 SHEET 2 AB 3 LEU A 12 ASP A 18 -1 O ASP A 18 N SER A 23 SHEET 3 AB 3 GLU A 54 LEU A 55 -1 O LEU A 55 N VAL A 14 SHEET 1 AC 4 TRP A 41 LYS A 48 0 SHEET 2 AC 4 ALA A 29 LYS A 35 -1 O VAL A 30 N GLY A 47 SHEET 3 AC 4 GLY A 67 ILE A 73 -1 O ILE A 68 N LYS A 35 SHEET 4 AC 4 ALA A 91 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 1 BA 4 TRP B 41 LYS B 48 0 SHEET 2 BA 4 ALA B 29 LYS B 35 -1 O VAL B 30 N GLY B 47 SHEET 3 BA 4 GLY B 67 ILE B 73 -1 O ILE B 68 N LYS B 35 SHEET 4 BA 4 ALA B 91 ALA B 97 -1 O ALA B 91 N ILE B 73 SHEET 1 CA 7 SER C 23 PRO C 24 0 SHEET 2 CA 7 LEU C 12 ASP C 18 -1 O ASP C 18 N SER C 23 SHEET 3 CA 7 ARG C 104 SER C 112 1 O TYR C 105 N MET C 13 SHEET 4 CA 7 SER C 115 THR C 123 -1 O SER C 115 N SER C 112 SHEET 5 CA 7 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 CA 7 ARG D 104 SER D 112 -1 O ARG D 104 N THR D 123 SHEET 7 CA 7 LEU D 12 ASP D 18 1 O MET D 13 N ILE D 107 SHEET 1 CB 3 SER C 23 PRO C 24 0 SHEET 2 CB 3 LEU C 12 ASP C 18 -1 O ASP C 18 N SER C 23 SHEET 3 CB 3 GLU C 54 LEU C 55 -1 O LEU C 55 N VAL C 14 SHEET 1 CC 4 TRP C 41 LYS C 48 0 SHEET 2 CC 4 ALA C 29 LYS C 35 -1 O VAL C 30 N GLY C 47 SHEET 3 CC 4 GLY C 67 ILE C 73 -1 O ILE C 68 N LYS C 35 SHEET 4 CC 4 ALA C 91 ALA C 97 -1 O ALA C 91 N ILE C 73 SHEET 1 DA 4 TRP D 41 LYS D 48 0 SHEET 2 DA 4 ALA D 29 LYS D 35 -1 O VAL D 30 N GLY D 47 SHEET 3 DA 4 GLY D 67 ILE D 73 -1 O ILE D 68 N LYS D 35 SHEET 4 DA 4 ALA D 91 ALA D 97 -1 O ALA D 91 N ILE D 73 CRYST1 64.729 83.301 86.126 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011611 0.00000