HEADER GLUTATHIONE BIOSYNTHESIS LIGASE 12-MAR-93 1GLT OBSLTE 31-JUL-95 1GLT 2GLT TITLE THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE TITLE 2 FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS GLUTATHIONE BIOSYNTHESIS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YAMAGUCHI,H.KATO,Y.KATSUBE REVDAT 1 31-JAN-94 1GLT 0 JRNL AUTH H.YAMAGUCHI,H.KATO,Y.HATA,T.NISHIOKA,A.KIMURA, JRNL AUTH 2 J.ODA,Y.KATSUBE JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE JRNL TITL 2 SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 JRNL TITL 3 ANGSTROMS RESOLUTION JRNL REF J.MOL.BIOL. V. 229 1083 1993 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.KATO,H.YAMAGUCHI,Y.HATA,T.NISHIOKA,Y.KATSUBE, REMARK 1 AUTH 2 J.ODA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF REMARK 1 TITL 2 GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B REMARK 1 REF J.MOL.BIOL. V. 209 503 1989 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.KATO,M.KOBAYASHI,K.MURATA,T.NISHIOKA,J.ODA REMARK 1 TITL OVEREXPRESSION OF GLUTATHIONE SYNTHETASE IN REMARK 1 TITL 2 ESCHERICHIA COLI REMARK 1 REF AGRIC.BIOL.CHEM. V. 53 3071 1989 REMARK 1 REFN ASTM ABCHA6 JA ISSN 0002-1369 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.KATO,T.TANAKA,T.NISHIOKA,A.KIMURA,J.ODA REMARK 1 TITL ROLE OF CYSTEINE RESIDUES IN GLUTATHIONE REMARK 1 TITL 2 SYNTHETASE FROM ESCHERICHIA COLI B: CHEMICAL REMARK 1 TITL 3 MODIFICATION AND OLIGONUCLEOTIDE SITE-DIRECTED REMARK 1 TITL 4 MUTAGENESIS REMARK 1 REF J.BIOL.CHEM. V. 263 11646 1988 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.GUSHIMA,S.YASUDA,E.SOEDA,M.YOKOTA,M.KONDO, REMARK 1 AUTH 2 A.KIMURA REMARK 1 TITL COMPLETE NUCLEOTIDE SEQUENCE OF THE E.COLI REMARK 1 TITL 2 GLUTATHIONE SYNTHETASE GSH-II REMARK 1 REF NUCLEIC ACIDS RES. V. 12 9299 1984 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ 1GLT REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GLT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1GLT RESIDUES 224 - 242 AND RESIDUES 167 - 169 HAVE NO 1GLT REMARK 5 SIGNIFICANT ELECTRON DENSITY AND ARE NOT INCLUDED IN THE REMARK 5 1GLT MODEL. THE AMINO ACID SEQUENCE OF THE REGION 167 - 169 REMARK 5 IS 1GLT GLY-MET-GLY-GLY. THE AMINO ACID SEQUENCE OF THE REMARK 5 REGION 1GLT 224 - 241 IS ILE-PRO-GLN-GLY-GLY-GLU-THR-ARG- REMARK 5 GLY-ASN-LEU- 1GLT ALA-ALA-GLY-GLY. 1GLT REMARK 6 REMARK 6 1GLT THE STRAND FROM LEU 43 TO ILE 46 MAKES UP A REMARK 6 INTERSUBUNIT 1GLT BETA-SHEET WITH THE STRAND FROM THR 138 REMARK 6 TO ARG 142 OF 1GLT ANOTHER SUBUNIT. 1GLT REMARK 7 REMARK 7 1GLT THE ASYMMETRIC UNIT OF THE CRYSTAL CONTAINS ONE REMARK 7 SUBUNIT OF 1GLT THE TETRAMERIC MOLECULE. SUBUNITS IN THE REMARK 7 TETRAMERIC 1GLT MOLECULE CAN BE GENERATED BY APPLYING REMARK 7 FOLLOWING OPERATIONS 1GLT TO THE FRACTIONAL REMARK 7 CRYSTALLOGRAPHIC COORDINATES XFRAC, 1GLT YFRAC, ZFRAC. 1GLT REMARK 7 1GLT 0 1 0 XFRAC 0 XFRAC2 1GLT 1 0 0 X YFRAC + 0 = YFRAC2 REMARK 7 1GLT 0 0 -1 ZFRAC 0.6666666 ZFRAC2 1GLT 1GLT -1 0 0 XFRAC 1 REMARK 7 XFRAC3 1GLT 0 -1 0 X YFRAC + 1 = XFRAC3 1GLT 0 0 1 ZFRAC 0 REMARK 7 XFRAC3 1GLT 1GLT 0 -1 0 XFRAC 1 XFRAC4 1GLT -1 0 0 X YFRAC REMARK 7 + 1 = YFRAC4 1GLT 0 0 -1 ZFRAC 0.6666666 ZFRAC4 1GLT REMARK 8 REMARK 8 1GLT THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 8 1GLT ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS REMARK 8 BELOW, 1GLT TWO SHEETS ARE DEFINED. STRANDS 1 AND 2 OF S1 REMARK 8 AND S2 ARE 1GLT IDENTICAL. 1GLT REMARK 9 REMARK 9 1GLT THIS IS A PRELIMINARY SET OF COORDINATES. FURTHER 1GLT REMARK 9 REFINEMENT IS IN PROGRESS. 1GLT REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,2/3+Z REMARK 290 3555 -X+Y,-X,1/3+Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,2/3+Z REMARK 290 6555 X-Y,X,1/3+Z REMARK 290 7555 Y,X,2/3-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,1/3-Z REMARK 290 10555 -Y,-X,2/3-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,1/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.46667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.73333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.46667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.73333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.46667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY 164 REMARK 465 MET 165 REMARK 465 GLY 166 REMARK 465 GLY 167 REMARK 465 ILE 226 REMARK 465 PRO 227 REMARK 465 GLN 228 REMARK 465 GLY 229 REMARK 465 GLY 230 REMARK 465 GLU 231 REMARK 465 THR 232 REMARK 465 ARG 233 REMARK 465 GLY 234 REMARK 465 ASN 235 REMARK 465 LEU 236 REMARK 465 ALA 237 REMARK 465 ALA 238 REMARK 465 GLY 239 REMARK 465 GLY 240 REMARK 465 ARG 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NZ LYS 209 OD1 ASP 251 1.85 REMARK 500 NH2 ARG 55 O HOH 478 1.99 REMARK 500 OE1 GLU 137 O HOH 466 1.99 REMARK 500 NH1 ARG 51 OD1 ASP 74 2.05 REMARK 500 OH TYR 33 OE1 GLU 310 2.12 REMARK 500 SG CYS 289 O HOH 401 2.12 REMARK 500 OE1 GLU 296 O HOH 460 2.12 REMARK 500 NE2 GLN 314 O HOH 480 2.13 REMARK 500 OG SER 155 O HOH 497 2.16 REMARK 500 O GLY 48 NH1 ARG 104 2.17 REMARK 500 OD2 ASP 156 NH2 ARG 172 2.18 REMARK 500 OE2 GLU 185 CD2 HIS 190 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH 413 O HOH 497 5554 1.58 REMARK 500 O HOH 503 O HOH 504 8556 1.91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG 104 CD - NE - CZ ANGL. DEV. = 29.4 DEGREES REMARK 500 ASN 114 C - N - CA ANGL. DEV. = 42.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN 114 125.12 43.64 REMARK 500 SER 155 -59.13 74.32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL 113 ASN 114 -131.67 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 439 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH 450 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH 451 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH 477 DISTANCE = 5.04 ANGSTROMS SEQRES 1 316 MET ILE LYS LEU GLY ILE VAL MET ASP PRO ILE ALA ASN SEQRES 2 316 ILE ASN ILE LYS LYS ASP SER SER PHE ALA MET LEU LEU SEQRES 3 316 GLU ALA GLN ARG ARG GLY TYR GLU LEU HIS TYR MET GLU SEQRES 4 316 MET GLY ASP LEU TYR LEU ILE ASN GLY GLU ALA ARG ALA SEQRES 5 316 HIS THR ARG THR LEU ASN VAL LYS GLN ASN TYR GLU GLU SEQRES 6 316 TRP PHE SER PHE VAL GLY GLU GLN ASP LEU PRO LEU ALA SEQRES 7 316 ASP LEU ASP VAL ILE LEU MET ARG LYS ASP PRO PRO PHE SEQRES 8 316 ASP THR GLU PHE ILE TYR ALA THR TYR ILE LEU GLU ARG SEQRES 9 316 ALA GLU GLU LYS GLY THR LEU ILE VAL ASN LYS PRO GLN SEQRES 10 316 SER LEU ARG ASP CYS ASN GLU LYS LEU PHE THR ALA TRP SEQRES 11 316 PHE SER ASP LEU THR PRO GLU THR LEU VAL THR ARG ASN SEQRES 12 316 LYS ALA GLN LEU LYS ALA PHE TRP GLU LYS HIS SER ASP SEQRES 13 316 ILE ILE LEU LYS PRO LEU ASP GLY MET GLY GLY ALA SER SEQRES 14 316 ILE PHE ARG VAL LYS GLU GLY ASP PRO ASN LEU GLY VAL SEQRES 15 316 ILE ALA GLU THR LEU THR GLU HIS GLY THR ARG TYR CYS SEQRES 16 316 MET ALA GLN ASN TYR LEU PRO ALA ILE LYS ASP GLY ASP SEQRES 17 316 LYS ARG VAL LEU VAL VAL ASP GLY GLU PRO VAL PRO TYR SEQRES 18 316 CYS LEU ALA ARG ILE PRO GLN GLY GLY GLU THR ARG GLY SEQRES 19 316 ASN LEU ALA ALA GLY GLY ARG GLY GLU PRO ARG PRO LEU SEQRES 20 316 THR GLU SER ASP TRP LYS ILE ALA ARG GLN ILE GLY PRO SEQRES 21 316 THR LEU LYS GLU LYS GLY LEU ILE PHE VAL GLY LEU ASP SEQRES 22 316 ILE ILE GLY ASP ARG LEU THR GLU ILE ASN VAL THR SER SEQRES 23 316 PRO THR CYS ILE ARG GLU ILE GLU ALA GLU PHE PRO VAL SEQRES 24 316 SER ILE THR GLY MET LEU MET ASP ALA ILE GLU ALA ARG SEQRES 25 316 LEU GLN GLN GLN FTNOTE 1 CIS PROLINE - PRO 90 FTNOTE 2 VAL 113 - ASN 114 228.327 PEPTIDE BOND DEVIATES FTNOTE 2 SIGNIFICANTLY FROM TRANS CONFORMATION FORMUL 2 HOH *106(H2 O1) HELIX 1 H1 SER 20 ARG 30 1 11 HELIX 2 H2 THR 93 GLU 106 1 14 HELIX 3 H3 PRO 116 ASP 121 1 6 HELIX 4 H4 LEU 126 TRP 130 5 5 HELIX 5 H5 LYS 144 HIS 154 1 11 HELIX 6 H6 LEU 180 LEU 187 1 8 HELIX 7 H7 PRO 202 ASP 206 5 5 HELIX 8 H8 GLU 249 LYS 265 1KINKED AT PRO 260 17 HELIX 9 H9 ILE 290 GLU 296 1 7 HELIX 10 H10 ILE 301 GLN 315 1 15 SHEET 1 S1 6 PHE 67 PRO 76 0 SHEET 2 S1 6 GLU 49 VAL 59 -1 SHEET 3 S1 6 TYR 33 MET 38 -1 SHEET 4 S1 6 LYS 3 MET 8 1 SHEET 5 S1 6 VAL 82 ARG 86 1 SHEET 6 S1 6 LEU 111 VAL 113 1 SHEET 1 S2 3 PHE 67 PRO 76 0 SHEET 2 S2 3 GLU 49 VAL 59 -1 SHEET 3 S2 3 LEU 43 ILE 46 -1 SHEET 1 S3 4 THR 138 ARG 142 0 SHEET 2 S3 4 CYS 195 ASN 199 -1 SHEET 3 S3 4 ILE 157 PRO 161 -1 SHEET 4 S3 4 PHE 171 VAL 173 -1 SHEET 1 S4 5 GLU 243 PRO 246 0 SHEET 2 S4 5 TYR 221 ARG 225 -1 SHEET 3 S4 5 ASP 208 VAL 214 -1 SHEET 4 S4 5 PHE 269 ILE 274 -1 SHEET 5 S4 5 LEU 279 ASN 283 -1 TURN 1 T1 PRO 10 ASN 13 TYPE I TURN 2 T2 ASN 15 LYS 18 TYPE III TURN 3 T3 GLU 39 ASP 42 TYPE I TURN 4 T4 MET 40 LEU 43 TYPE III TURN 5 T5 ILE 46 GLU 49 TYPE I' TURN 6 T6 PRO 76 ASP 79 TYPE III TURN 7 T7 LEU 77 LEU 80 TYPE III TURN 8 T8 PHE 131 LEU 134 TYPE III TURN 9 T9 LYS 174 ASP 177 TYPE II TURN 10 T10 VAL 214 GLU 217 TYPE I' TURN 11 T11 ILE 275 ARG 278 TYPE II' CISPEP 1 PRO 89 PRO 90 0 2.67 CRYST1 88.000 88.000 164.200 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011364 0.006561 0.000000 0.00000 SCALE2 0.000000 0.013122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006090 0.00000