data_1GMD # _entry.id 1GMD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1GMD WWPDB D_1000173617 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GMD _pdbx_database_status.recvd_initial_deposition_date 1993-08-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yennawar, N.H.' 1 'Yennawar, H.P.' 2 'Banerjee, S.' 3 'Farber, G.K.' 4 # _citation.id primary _citation.title 'X-ray crystal structure of gamma-chymotrypsin in hexane.' _citation.journal_abbrev Biochemistry _citation.journal_volume 33 _citation.page_first 7326 _citation.page_last 7336 _citation.year 1994 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8003497 _citation.pdbx_database_id_DOI 10.1021/bi00189a038 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yennawar, N.H.' 1 primary 'Yennawar, H.P.' 2 primary 'Farber, G.K.' 3 # _cell.entry_id 1GMD _cell.length_a 69.340 _cell.length_b 69.320 _cell.length_c 97.510 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1GMD _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GAMMA-CHYMOTRYPSIN A' 1253.511 1 3.4.21.1 ? ? ? 2 polymer nat 'GAMMA-CHYMOTRYPSIN A' 13934.556 1 3.4.21.1 ? ? ? 3 polymer nat 'GAMMA-CHYMOTRYPSIN A' 10074.495 1 3.4.21.1 ? ? ? 4 polymer nat 'PRO GLY ALA TYR ASP PEPTIDE' 521.521 1 ? ? ? ? 5 non-polymer syn HEXANE 86.175 7 ? ? ? ? 6 water nat water 18.015 130 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no CGVPAIQPVLSGL CGVPAIQPVLSGL E ? 2 'polypeptide(L)' no no ;IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYN SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY ; ;IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYN SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY ; F ? 3 'polypeptide(L)' no no ;ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVY ARVTALVNWVQQTLAAN ; ;ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVY ARVTALVNWVQQTLAAN ; G ? 4 'polypeptide(L)' no no PGAYD PGAYD B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 VAL n 1 4 PRO n 1 5 ALA n 1 6 ILE n 1 7 GLN n 1 8 PRO n 1 9 VAL n 1 10 LEU n 1 11 SER n 1 12 GLY n 1 13 LEU n 2 1 ILE n 2 2 VAL n 2 3 ASN n 2 4 GLY n 2 5 GLU n 2 6 GLU n 2 7 ALA n 2 8 VAL n 2 9 PRO n 2 10 GLY n 2 11 SER n 2 12 TRP n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 SER n 2 18 LEU n 2 19 GLN n 2 20 ASP n 2 21 LYS n 2 22 THR n 2 23 GLY n 2 24 PHE n 2 25 HIS n 2 26 PHE n 2 27 CYS n 2 28 GLY n 2 29 GLY n 2 30 SER n 2 31 LEU n 2 32 ILE n 2 33 ASN n 2 34 GLU n 2 35 ASN n 2 36 TRP n 2 37 VAL n 2 38 VAL n 2 39 THR n 2 40 ALA n 2 41 ALA n 2 42 HIS n 2 43 CYS n 2 44 GLY n 2 45 VAL n 2 46 THR n 2 47 THR n 2 48 SER n 2 49 ASP n 2 50 VAL n 2 51 VAL n 2 52 VAL n 2 53 ALA n 2 54 GLY n 2 55 GLU n 2 56 PHE n 2 57 ASP n 2 58 GLN n 2 59 GLY n 2 60 SER n 2 61 SER n 2 62 SER n 2 63 GLU n 2 64 LYS n 2 65 ILE n 2 66 GLN n 2 67 LYS n 2 68 LEU n 2 69 LYS n 2 70 ILE n 2 71 ALA n 2 72 LYS n 2 73 VAL n 2 74 PHE n 2 75 LYS n 2 76 ASN n 2 77 SER n 2 78 LYS n 2 79 TYR n 2 80 ASN n 2 81 SER n 2 82 LEU n 2 83 THR n 2 84 ILE n 2 85 ASN n 2 86 ASN n 2 87 ASP n 2 88 ILE n 2 89 THR n 2 90 LEU n 2 91 LEU n 2 92 LYS n 2 93 LEU n 2 94 SER n 2 95 THR n 2 96 ALA n 2 97 ALA n 2 98 SER n 2 99 PHE n 2 100 SER n 2 101 GLN n 2 102 THR n 2 103 VAL n 2 104 SER n 2 105 ALA n 2 106 VAL n 2 107 CYS n 2 108 LEU n 2 109 PRO n 2 110 SER n 2 111 ALA n 2 112 SER n 2 113 ASP n 2 114 ASP n 2 115 PHE n 2 116 ALA n 2 117 ALA n 2 118 GLY n 2 119 THR n 2 120 THR n 2 121 CYS n 2 122 VAL n 2 123 THR n 2 124 THR n 2 125 GLY n 2 126 TRP n 2 127 GLY n 2 128 LEU n 2 129 THR n 2 130 ARG n 2 131 TYR n 3 1 ALA n 3 2 ASN n 3 3 THR n 3 4 PRO n 3 5 ASP n 3 6 ARG n 3 7 LEU n 3 8 GLN n 3 9 GLN n 3 10 ALA n 3 11 SER n 3 12 LEU n 3 13 PRO n 3 14 LEU n 3 15 LEU n 3 16 SER n 3 17 ASN n 3 18 THR n 3 19 ASN n 3 20 CYS n 3 21 LYS n 3 22 LYS n 3 23 TYR n 3 24 TRP n 3 25 GLY n 3 26 THR n 3 27 LYS n 3 28 ILE n 3 29 LYS n 3 30 ASP n 3 31 ALA n 3 32 MET n 3 33 ILE n 3 34 CYS n 3 35 ALA n 3 36 GLY n 3 37 ALA n 3 38 SER n 3 39 GLY n 3 40 VAL n 3 41 SER n 3 42 SER n 3 43 CYS n 3 44 MET n 3 45 GLY n 3 46 ASP n 3 47 SER n 3 48 GLY n 3 49 GLY n 3 50 PRO n 3 51 LEU n 3 52 VAL n 3 53 CYS n 3 54 LYS n 3 55 LYS n 3 56 ASN n 3 57 GLY n 3 58 ALA n 3 59 TRP n 3 60 THR n 3 61 LEU n 3 62 VAL n 3 63 GLY n 3 64 ILE n 3 65 VAL n 3 66 SER n 3 67 TRP n 3 68 GLY n 3 69 SER n 3 70 SER n 3 71 THR n 3 72 CYS n 3 73 SER n 3 74 THR n 3 75 SER n 3 76 THR n 3 77 PRO n 3 78 GLY n 3 79 VAL n 3 80 TYR n 3 81 ALA n 3 82 ARG n 3 83 VAL n 3 84 THR n 3 85 ALA n 3 86 LEU n 3 87 VAL n 3 88 ASN n 3 89 TRP n 3 90 VAL n 3 91 GLN n 3 92 GLN n 3 93 THR n 3 94 LEU n 3 95 ALA n 3 96 ALA n 3 97 ASN n 4 1 PRO n 4 2 GLY n 4 3 ALA n 4 4 TYR n 4 5 ASP n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP CTRA_BOVIN P00766 1 1 ? ? 2 UNP CTRA_BOVIN P00766 2 16 ? ? 3 UNP CTRA_BOVIN P00766 3 149 ? ? 4 PDB 1GMD 1GMD 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GMD E 1 ? 13 ? P00766 1 ? 13 ? 1 13 2 2 1GMD F 1 ? 131 ? P00766 16 ? 146 ? 16 146 3 3 1GMD G 1 ? 97 ? P00766 149 ? 245 ? 149 245 4 4 1GMD B 1 ? 5 ? 1GMD 501 ? 505 ? 501 505 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEX non-polymer . HEXANE ? 'C6 H14' 86.175 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1GMD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1GMD _reflns.number_all ? _reflns.number_obs ? _reflns.percent_possible_obs ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1GMD _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1772 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 1944 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.82 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1GMD _struct.title 'X-ray crystal structure of gamma-chymotrypsin in hexane' _struct.pdbx_descriptor PROTEIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GMD _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, SERINE PROTEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id H1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 83 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 97 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id G _struct_conf.beg_auth_seq_id 231 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id G _struct_conf.end_auth_seq_id 245 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 B CYS 107 SG ? ? E CYS 1 F CYS 122 1_555 ? ? ? ? ? ? ? 2.040 ? disulf2 disulf ? ? B CYS 27 SG ? ? ? 1_555 B CYS 43 SG ? ? F CYS 42 F CYS 58 1_555 ? ? ? ? ? ? ? 2.029 ? disulf3 disulf ? ? B CYS 121 SG ? ? ? 1_555 C CYS 53 SG ? ? F CYS 136 G CYS 201 1_555 ? ? ? ? ? ? ? 2.047 ? disulf4 disulf ? ? C CYS 20 SG ? ? ? 1_555 C CYS 34 SG ? ? G CYS 168 G CYS 182 1_555 ? ? ? ? ? ? ? 2.037 ? disulf5 disulf ? ? C CYS 43 SG ? ? ? 1_555 C CYS 72 SG ? ? G CYS 191 G CYS 220 1_555 ? ? ? ? ? ? ? 2.035 ? covale1 covale ? ? C SER 47 OG ? ? ? 1_555 D TYR 4 C ? ? G SER 195 B TYR 504 1_555 ? ? ? ? ? ? ? 1.437 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 7 ? S2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S1 2 3 ? anti-parallel S1 3 4 ? anti-parallel S1 4 5 ? anti-parallel S1 5 6 ? anti-parallel S1 6 7 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S2 5 6 ? anti-parallel S2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 PRO B 13 ? ASP B 20 ? PRO F 28 ASP F 35 S1 2 CYS B 27 ? GLU B 34 ? CYS F 42 GLU F 49 S1 3 ASN B 35 ? ALA B 41 ? ASN F 50 ALA F 56 S1 4 ASN B 86 ? THR B 95 ? ASN F 101 THR F 110 S1 5 GLN B 66 ? SER B 77 ? GLN F 81 SER F 92 S1 6 SER B 48 ? GLY B 54 ? SER F 63 GLY F 69 S1 7 PRO B 13 ? ASP B 20 ? PRO F 28 ASP F 35 S2 1 GLY B 118 ? TRP B 126 ? GLY F 133 TRP F 141 S2 2 LEU C 7 ? LEU C 14 ? LEU G 155 LEU G 162 S2 3 ALA C 31 ? SER C 38 ? ALA G 179 SER G 186 S2 4 SER C 75 ? ALA C 81 ? SER G 223 ALA G 229 S2 5 ILE C 64 ? SER C 70 ? ILE G 212 SER G 218 S2 6 GLY C 45 ? CYS C 53 ? GLY G 193 CYS G 201 S2 7 GLY B 118 ? TRP B 126 ? GLY F 133 TRP F 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE HEX F 401' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE HEX F 402' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE HEX F 403' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE HEX F 404' AC5 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE HEX F 405' AC6 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE HEX F 406' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE HEX E 407' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ILE B 1 ? ILE F 16 . ? 1_555 ? 2 AC1 6 ASN B 3 ? ASN F 18 . ? 1_555 ? 3 AC1 6 GLY B 4 ? GLY F 19 . ? 1_555 ? 4 AC1 6 THR B 129 ? THR F 144 . ? 1_555 ? 5 AC1 6 HOH M . ? HOH F 318 . ? 1_555 ? 6 AC1 6 GLN C 8 ? GLN G 156 . ? 1_555 ? 7 AC2 8 TRP B 12 ? TRP F 27 . ? 1_555 ? 8 AC2 8 TRP B 14 ? TRP F 29 . ? 1_555 ? 9 AC2 8 VAL B 122 ? VAL F 137 . ? 1_555 ? 10 AC2 8 THR B 123 ? THR F 138 . ? 1_555 ? 11 AC2 8 THR B 124 ? THR F 139 . ? 1_555 ? 12 AC2 8 GLN C 9 ? GLN G 157 . ? 1_555 ? 13 AC2 8 PRO C 50 ? PRO G 198 . ? 1_555 ? 14 AC2 8 VAL C 52 ? VAL G 200 . ? 1_555 ? 15 AC3 6 LEU B 82 ? LEU F 97 . ? 2_675 ? 16 AC3 6 LEU B 128 ? LEU F 143 . ? 1_555 ? 17 AC3 6 TYR B 131 ? TYR F 146 . ? 1_555 ? 18 AC3 6 LYS C 27 ? LYS G 175 . ? 2_675 ? 19 AC3 6 MET C 44 ? MET G 192 . ? 1_555 ? 20 AC3 6 SER C 70 ? SER G 218 . ? 1_555 ? 21 AC4 5 LEU A 10 ? LEU E 10 . ? 8_777 ? 22 AC4 5 SER A 11 ? SER E 11 . ? 8_777 ? 23 AC4 5 ASN B 3 ? ASN F 18 . ? 1_555 ? 24 AC4 5 HOH M . ? HOH F 302 . ? 1_555 ? 25 AC4 5 GLY C 39 ? GLY G 187 . ? 1_555 ? 26 AC5 11 PRO B 13 ? PRO F 28 . ? 1_555 ? 27 AC5 11 GLN B 15 ? GLN F 30 . ? 1_555 ? 28 AC5 11 VAL B 16 ? VAL F 31 . ? 1_555 ? 29 AC5 11 SER B 17 ? SER F 32 . ? 1_555 ? 30 AC5 11 VAL B 52 ? VAL F 67 . ? 1_555 ? 31 AC5 11 ALA B 53 ? ALA F 68 . ? 1_555 ? 32 AC5 11 GLY B 54 ? GLY F 69 . ? 1_555 ? 33 AC5 11 GLU B 55 ? GLU F 70 . ? 1_555 ? 34 AC5 11 THR B 102 ? THR F 117 . ? 1_555 ? 35 AC5 11 TRP B 126 ? TRP F 141 . ? 1_555 ? 36 AC5 11 HOH M . ? HOH F 267 . ? 1_555 ? 37 AC6 8 ASP D 5 ? ASP B 505 . ? 2_675 ? 38 AC6 8 ALA B 41 ? ALA F 56 . ? 1_555 ? 39 AC6 8 HIS B 42 ? HIS F 57 . ? 2_675 ? 40 AC6 8 HIS B 42 ? HIS F 57 . ? 1_555 ? 41 AC6 8 CYS B 43 ? CYS F 58 . ? 2_675 ? 42 AC6 8 GLY B 44 ? GLY F 59 . ? 2_675 ? 43 AC6 8 TYR B 79 ? TYR F 94 . ? 1_555 ? 44 AC6 8 SER B 81 ? SER F 96 . ? 1_555 ? 45 AC7 4 CYS A 1 ? CYS E 1 . ? 1_555 ? 46 AC7 4 HOH L . ? HOH E 350 . ? 1_555 ? 47 AC7 4 THR B 22 ? THR F 37 . ? 6_576 ? 48 AC7 4 HOH M . ? HOH F 250 . ? 1_555 ? # _database_PDB_matrix.entry_id 1GMD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GMD _atom_sites.fract_transf_matrix[1][1] 0.014422 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014426 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010255 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS E . n A 1 2 GLY 2 2 2 GLY GLY E . n A 1 3 VAL 3 3 3 VAL VAL E . n A 1 4 PRO 4 4 4 PRO PRO E . n A 1 5 ALA 5 5 5 ALA ALA E . n A 1 6 ILE 6 6 6 ILE ILE E . n A 1 7 GLN 7 7 7 GLN GLN E . n A 1 8 PRO 8 8 8 PRO PRO E . n A 1 9 VAL 9 9 9 VAL VAL E . n A 1 10 LEU 10 10 10 LEU LEU E . n A 1 11 SER 11 11 10 SER LEU E . n A 1 12 GLY 12 12 ? ? ? E . n A 1 13 LEU 13 13 ? ? ? E . n B 2 1 ILE 1 16 16 ILE ILE F . n B 2 2 VAL 2 17 17 VAL VAL F . n B 2 3 ASN 3 18 18 ASN ASN F . n B 2 4 GLY 4 19 19 GLY GLY F . n B 2 5 GLU 5 20 20 GLU GLU F . n B 2 6 GLU 6 21 21 GLU GLU F . n B 2 7 ALA 7 22 22 ALA ALA F . n B 2 8 VAL 8 23 23 VAL VAL F . n B 2 9 PRO 9 24 24 PRO PRO F . n B 2 10 GLY 10 25 25 GLY GLY F . n B 2 11 SER 11 26 26 SER SER F . n B 2 12 TRP 12 27 27 TRP TRP F . n B 2 13 PRO 13 28 28 PRO PRO F . n B 2 14 TRP 14 29 29 TRP TRP F . n B 2 15 GLN 15 30 30 GLN GLN F . n B 2 16 VAL 16 31 31 VAL VAL F . n B 2 17 SER 17 32 32 SER SER F . n B 2 18 LEU 18 33 33 LEU LEU F . n B 2 19 GLN 19 34 34 GLN GLN F . n B 2 20 ASP 20 35 35 ASP ASP F . n B 2 21 LYS 21 36 36 LYS LYS F . n B 2 22 THR 22 37 37 THR THR F . n B 2 23 GLY 23 38 38 GLY GLY F . n B 2 24 PHE 24 39 39 PHE PHE F . n B 2 25 HIS 25 40 40 HIS HIS F . n B 2 26 PHE 26 41 41 PHE PHE F . n B 2 27 CYS 27 42 42 CYS CYS F . n B 2 28 GLY 28 43 43 GLY GLY F . n B 2 29 GLY 29 44 44 GLY GLY F . n B 2 30 SER 30 45 45 SER SER F . n B 2 31 LEU 31 46 46 LEU LEU F . n B 2 32 ILE 32 47 47 ILE ILE F . n B 2 33 ASN 33 48 48 ASN ASN F . n B 2 34 GLU 34 49 49 GLU GLU F . n B 2 35 ASN 35 50 50 ASN ASN F . n B 2 36 TRP 36 51 51 TRP TRP F . n B 2 37 VAL 37 52 52 VAL VAL F . n B 2 38 VAL 38 53 53 VAL VAL F . n B 2 39 THR 39 54 54 THR THR F . n B 2 40 ALA 40 55 55 ALA ALA F . n B 2 41 ALA 41 56 56 ALA ALA F . n B 2 42 HIS 42 57 57 HIS HIS F . n B 2 43 CYS 43 58 58 CYS CYS F . n B 2 44 GLY 44 59 59 GLY GLY F . n B 2 45 VAL 45 60 60 VAL VAL F . n B 2 46 THR 46 61 61 THR THR F . n B 2 47 THR 47 62 62 THR THR F . n B 2 48 SER 48 63 63 SER SER F . n B 2 49 ASP 49 64 64 ASP ASP F . n B 2 50 VAL 50 65 65 VAL VAL F . n B 2 51 VAL 51 66 66 VAL VAL F . n B 2 52 VAL 52 67 67 VAL VAL F . n B 2 53 ALA 53 68 68 ALA ALA F . n B 2 54 GLY 54 69 69 GLY GLY F . n B 2 55 GLU 55 70 70 GLU GLU F . n B 2 56 PHE 56 71 71 PHE PHE F . n B 2 57 ASP 57 72 72 ASP ASP F . n B 2 58 GLN 58 73 73 GLN GLN F . n B 2 59 GLY 59 74 74 GLY GLY F . n B 2 60 SER 60 75 75 SER SER F . n B 2 61 SER 61 76 76 SER SER F . n B 2 62 SER 62 77 77 SER SER F . n B 2 63 GLU 63 78 78 GLU GLU F . n B 2 64 LYS 64 79 79 LYS LYS F . n B 2 65 ILE 65 80 80 ILE ILE F . n B 2 66 GLN 66 81 81 GLN GLN F . n B 2 67 LYS 67 82 82 LYS LYS F . n B 2 68 LEU 68 83 83 LEU LEU F . n B 2 69 LYS 69 84 84 LYS LYS F . n B 2 70 ILE 70 85 85 ILE ILE F . n B 2 71 ALA 71 86 86 ALA ALA F . n B 2 72 LYS 72 87 87 LYS LYS F . n B 2 73 VAL 73 88 88 VAL VAL F . n B 2 74 PHE 74 89 89 PHE PHE F . n B 2 75 LYS 75 90 90 LYS LYS F . n B 2 76 ASN 76 91 91 ASN ASN F . n B 2 77 SER 77 92 92 SER SER F . n B 2 78 LYS 78 93 93 LYS LYS F . n B 2 79 TYR 79 94 94 TYR TYR F . n B 2 80 ASN 80 95 95 ASN ASN F . n B 2 81 SER 81 96 96 SER SER F . n B 2 82 LEU 82 97 97 LEU LEU F . n B 2 83 THR 83 98 98 THR THR F . n B 2 84 ILE 84 99 99 ILE ILE F . n B 2 85 ASN 85 100 100 ASN ASN F . n B 2 86 ASN 86 101 101 ASN ASN F . n B 2 87 ASP 87 102 102 ASP ASP F . n B 2 88 ILE 88 103 103 ILE ILE F . n B 2 89 THR 89 104 104 THR THR F . n B 2 90 LEU 90 105 105 LEU LEU F . n B 2 91 LEU 91 106 106 LEU LEU F . n B 2 92 LYS 92 107 107 LYS LYS F . n B 2 93 LEU 93 108 108 LEU LEU F . n B 2 94 SER 94 109 109 SER SER F . n B 2 95 THR 95 110 110 THR THR F . n B 2 96 ALA 96 111 111 ALA ALA F . n B 2 97 ALA 97 112 112 ALA ALA F . n B 2 98 SER 98 113 113 SER SER F . n B 2 99 PHE 99 114 114 PHE PHE F . n B 2 100 SER 100 115 115 SER SER F . n B 2 101 GLN 101 116 116 GLN GLN F . n B 2 102 THR 102 117 117 THR THR F . n B 2 103 VAL 103 118 118 VAL VAL F . n B 2 104 SER 104 119 119 SER SER F . n B 2 105 ALA 105 120 120 ALA ALA F . n B 2 106 VAL 106 121 121 VAL VAL F . n B 2 107 CYS 107 122 122 CYS CYS F . n B 2 108 LEU 108 123 123 LEU LEU F . n B 2 109 PRO 109 124 124 PRO PRO F . n B 2 110 SER 110 125 125 SER SER F . n B 2 111 ALA 111 126 126 ALA ALA F . n B 2 112 SER 112 127 127 SER SER F . n B 2 113 ASP 113 128 128 ASP ASP F . n B 2 114 ASP 114 129 129 ASP ASP F . n B 2 115 PHE 115 130 130 PHE PHE F . n B 2 116 ALA 116 131 131 ALA ALA F . n B 2 117 ALA 117 132 132 ALA ALA F . n B 2 118 GLY 118 133 133 GLY GLY F . n B 2 119 THR 119 134 134 THR THR F . n B 2 120 THR 120 135 135 THR THR F . n B 2 121 CYS 121 136 136 CYS CYS F . n B 2 122 VAL 122 137 137 VAL VAL F . n B 2 123 THR 123 138 138 THR THR F . n B 2 124 THR 124 139 139 THR THR F . n B 2 125 GLY 125 140 140 GLY GLY F . n B 2 126 TRP 126 141 141 TRP TRP F . n B 2 127 GLY 127 142 142 GLY GLY F . n B 2 128 LEU 128 143 143 LEU LEU F . n B 2 129 THR 129 144 144 THR THR F . n B 2 130 ARG 130 145 145 ARG ARG F . n B 2 131 TYR 131 146 146 TYR TYR F . n C 3 1 ALA 1 149 ? ? ? G . n C 3 2 ASN 2 150 ? ? ? G . n C 3 3 THR 3 151 151 THR THR G . n C 3 4 PRO 4 152 152 PRO PRO G . n C 3 5 ASP 5 153 153 ASP ASP G . n C 3 6 ARG 6 154 154 ARG ARG G . n C 3 7 LEU 7 155 155 LEU LEU G . n C 3 8 GLN 8 156 156 GLN GLN G . n C 3 9 GLN 9 157 157 GLN GLN G . n C 3 10 ALA 10 158 158 ALA ALA G . n C 3 11 SER 11 159 159 SER SER G . n C 3 12 LEU 12 160 160 LEU LEU G . n C 3 13 PRO 13 161 161 PRO PRO G . n C 3 14 LEU 14 162 162 LEU LEU G . n C 3 15 LEU 15 163 163 LEU LEU G . n C 3 16 SER 16 164 164 SER SER G . n C 3 17 ASN 17 165 165 ASN ASN G . n C 3 18 THR 18 166 166 THR THR G . n C 3 19 ASN 19 167 167 ASN ASN G . n C 3 20 CYS 20 168 168 CYS CYS G . n C 3 21 LYS 21 169 169 LYS LYS G . n C 3 22 LYS 22 170 170 LYS LYS G . n C 3 23 TYR 23 171 171 TYR TYR G . n C 3 24 TRP 24 172 172 TRP TRP G . n C 3 25 GLY 25 173 173 GLY GLY G . n C 3 26 THR 26 174 174 THR THR G . n C 3 27 LYS 27 175 175 LYS LYS G . n C 3 28 ILE 28 176 176 ILE ILE G . n C 3 29 LYS 29 177 177 LYS LYS G . n C 3 30 ASP 30 178 178 ASP ASP G . n C 3 31 ALA 31 179 179 ALA ALA G . n C 3 32 MET 32 180 180 MET MET G . n C 3 33 ILE 33 181 181 ILE ILE G . n C 3 34 CYS 34 182 182 CYS CYS G . n C 3 35 ALA 35 183 183 ALA ALA G . n C 3 36 GLY 36 184 184 GLY GLY G . n C 3 37 ALA 37 185 185 ALA ALA G . n C 3 38 SER 38 186 186 SER SER G . n C 3 39 GLY 39 187 187 GLY GLY G . n C 3 40 VAL 40 188 188 VAL VAL G . n C 3 41 SER 41 189 189 SER SER G . n C 3 42 SER 42 190 190 SER SER G . n C 3 43 CYS 43 191 191 CYS CYS G . n C 3 44 MET 44 192 192 MET MET G . n C 3 45 GLY 45 193 193 GLY GLY G . n C 3 46 ASP 46 194 194 ASP ASP G . n C 3 47 SER 47 195 195 SER SER G . n C 3 48 GLY 48 196 196 GLY GLY G . n C 3 49 GLY 49 197 197 GLY GLY G . n C 3 50 PRO 50 198 198 PRO PRO G . n C 3 51 LEU 51 199 199 LEU LEU G . n C 3 52 VAL 52 200 200 VAL VAL G . n C 3 53 CYS 53 201 201 CYS CYS G . n C 3 54 LYS 54 202 202 LYS LYS G . n C 3 55 LYS 55 203 203 LYS LYS G . n C 3 56 ASN 56 204 204 ASN ASN G . n C 3 57 GLY 57 205 205 GLY GLY G . n C 3 58 ALA 58 206 206 ALA ALA G . n C 3 59 TRP 59 207 207 TRP TRP G . n C 3 60 THR 60 208 208 THR THR G . n C 3 61 LEU 61 209 209 LEU LEU G . n C 3 62 VAL 62 210 210 VAL VAL G . n C 3 63 GLY 63 211 211 GLY GLY G . n C 3 64 ILE 64 212 212 ILE ILE G . n C 3 65 VAL 65 213 213 VAL VAL G . n C 3 66 SER 66 214 214 SER SER G . n C 3 67 TRP 67 215 215 TRP TRP G . n C 3 68 GLY 68 216 216 GLY GLY G . n C 3 69 SER 69 217 217 SER SER G . n C 3 70 SER 70 218 218 SER SER G . n C 3 71 THR 71 219 219 THR THR G . n C 3 72 CYS 72 220 220 CYS CYS G . n C 3 73 SER 73 221 221 SER SER G . n C 3 74 THR 74 222 222 THR THR G . n C 3 75 SER 75 223 223 SER SER G . n C 3 76 THR 76 224 224 THR THR G . n C 3 77 PRO 77 225 225 PRO PRO G . n C 3 78 GLY 78 226 226 GLY GLY G . n C 3 79 VAL 79 227 227 VAL VAL G . n C 3 80 TYR 80 228 228 TYR TYR G . n C 3 81 ALA 81 229 229 ALA ALA G . n C 3 82 ARG 82 230 230 ARG ARG G . n C 3 83 VAL 83 231 231 VAL VAL G . n C 3 84 THR 84 232 232 THR THR G . n C 3 85 ALA 85 233 233 ALA ALA G . n C 3 86 LEU 86 234 234 LEU LEU G . n C 3 87 VAL 87 235 235 VAL VAL G . n C 3 88 ASN 88 236 236 ASN ASN G . n C 3 89 TRP 89 237 237 TRP TRP G . n C 3 90 VAL 90 238 238 VAL VAL G . n C 3 91 GLN 91 239 239 GLN GLN G . n C 3 92 GLN 92 240 240 GLN GLN G . n C 3 93 THR 93 241 241 THR THR G . n C 3 94 LEU 94 242 242 LEU LEU G . n C 3 95 ALA 95 243 243 ALA ALA G . n C 3 96 ALA 96 244 244 ALA ALA G . n C 3 97 ASN 97 245 245 ASN ASN G . n D 4 1 PRO 1 501 501 PRO PRO B . n D 4 2 GLY 2 502 502 GLY GLY B . n D 4 3 ALA 3 503 503 ALA ALA B . n D 4 4 TYR 4 504 504 TYR TYR B . n D 4 5 ASP 5 505 505 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEX 1 407 407 HEX HEX E . F 5 HEX 1 401 401 HEX HEX F . G 5 HEX 1 402 402 HEX HEX F . H 5 HEX 1 403 403 HEX HEX F . I 5 HEX 1 404 404 HEX HEX F . J 5 HEX 1 405 405 HEX HEX F . K 5 HEX 1 406 406 HEX HEX F . L 6 HOH 1 256 256 HOH HOH E . L 6 HOH 2 278 278 HOH HOH E . L 6 HOH 3 279 279 HOH HOH E . L 6 HOH 4 300 300 HOH HOH E . L 6 HOH 5 301 301 HOH HOH E . L 6 HOH 6 315 315 HOH HOH E . L 6 HOH 7 316 316 HOH HOH E . L 6 HOH 8 324 324 HOH HOH E . L 6 HOH 9 327 327 HOH HOH E . L 6 HOH 10 331 331 HOH HOH E . L 6 HOH 11 339 339 HOH HOH E . L 6 HOH 12 346 346 HOH HOH E . L 6 HOH 13 350 350 HOH HOH E . L 6 HOH 14 357 357 HOH HOH E . L 6 HOH 15 358 358 HOH HOH E . M 6 HOH 1 250 250 HOH HOH F . M 6 HOH 2 251 251 HOH HOH F . M 6 HOH 3 255 255 HOH HOH F . M 6 HOH 4 257 257 HOH HOH F . M 6 HOH 5 258 258 HOH HOH F . M 6 HOH 6 259 259 HOH HOH F . M 6 HOH 7 260 260 HOH HOH F . M 6 HOH 8 261 261 HOH HOH F . M 6 HOH 9 263 263 HOH HOH F . M 6 HOH 10 264 264 HOH HOH F . M 6 HOH 11 265 265 HOH HOH F . M 6 HOH 12 266 266 HOH HOH F . M 6 HOH 13 267 267 HOH HOH F . M 6 HOH 14 268 268 HOH HOH F . M 6 HOH 15 269 269 HOH HOH F . M 6 HOH 16 270 270 HOH HOH F . M 6 HOH 17 272 272 HOH HOH F . M 6 HOH 18 273 273 HOH HOH F . M 6 HOH 19 274 274 HOH HOH F . M 6 HOH 20 275 275 HOH HOH F . M 6 HOH 21 276 276 HOH HOH F . M 6 HOH 22 277 277 HOH HOH F . M 6 HOH 23 280 280 HOH HOH F . M 6 HOH 24 281 281 HOH HOH F . M 6 HOH 25 282 282 HOH HOH F . M 6 HOH 26 285 285 HOH HOH F . M 6 HOH 27 286 286 HOH HOH F . M 6 HOH 28 287 287 HOH HOH F . M 6 HOH 29 288 288 HOH HOH F . M 6 HOH 30 294 294 HOH HOH F . M 6 HOH 31 302 302 HOH HOH F . M 6 HOH 32 303 303 HOH HOH F . M 6 HOH 33 304 304 HOH HOH F . M 6 HOH 34 305 305 HOH HOH F . M 6 HOH 35 306 306 HOH HOH F . M 6 HOH 36 307 307 HOH HOH F . M 6 HOH 37 308 308 HOH HOH F . M 6 HOH 38 309 309 HOH HOH F . M 6 HOH 39 310 310 HOH HOH F . M 6 HOH 40 311 311 HOH HOH F . M 6 HOH 41 312 312 HOH HOH F . M 6 HOH 42 313 313 HOH HOH F . M 6 HOH 43 314 314 HOH HOH F . M 6 HOH 44 318 318 HOH HOH F . M 6 HOH 45 322 322 HOH HOH F . M 6 HOH 46 323 323 HOH HOH F . M 6 HOH 47 325 325 HOH HOH F . M 6 HOH 48 326 326 HOH HOH F . M 6 HOH 49 328 328 HOH HOH F . M 6 HOH 50 329 329 HOH HOH F . M 6 HOH 51 330 330 HOH HOH F . M 6 HOH 52 332 332 HOH HOH F . M 6 HOH 53 333 333 HOH HOH F . M 6 HOH 54 340 340 HOH HOH F . M 6 HOH 55 341 341 HOH HOH F . M 6 HOH 56 342 342 HOH HOH F . M 6 HOH 57 345 345 HOH HOH F . M 6 HOH 58 347 347 HOH HOH F . M 6 HOH 59 348 348 HOH HOH F . M 6 HOH 60 349 349 HOH HOH F . M 6 HOH 61 351 351 HOH HOH F . M 6 HOH 62 359 359 HOH HOH F . M 6 HOH 63 360 360 HOH HOH F . M 6 HOH 64 361 361 HOH HOH F . M 6 HOH 65 362 362 HOH HOH F . M 6 HOH 66 363 363 HOH HOH F . M 6 HOH 67 372 372 HOH HOH F . M 6 HOH 68 373 373 HOH HOH F . M 6 HOH 69 374 374 HOH HOH F . M 6 HOH 70 378 378 HOH HOH F . M 6 HOH 71 379 379 HOH HOH F . N 6 HOH 1 252 252 HOH HOH G . N 6 HOH 2 253 253 HOH HOH G . N 6 HOH 3 254 254 HOH HOH G . N 6 HOH 4 262 262 HOH HOH G . N 6 HOH 5 271 271 HOH HOH G . N 6 HOH 6 283 283 HOH HOH G . N 6 HOH 7 284 284 HOH HOH G . N 6 HOH 8 289 289 HOH HOH G . N 6 HOH 9 290 290 HOH HOH G . N 6 HOH 10 291 291 HOH HOH G . N 6 HOH 11 292 292 HOH HOH G . N 6 HOH 12 293 293 HOH HOH G . N 6 HOH 13 295 295 HOH HOH G . N 6 HOH 14 296 296 HOH HOH G . N 6 HOH 15 297 297 HOH HOH G . N 6 HOH 16 298 298 HOH HOH G . N 6 HOH 17 299 299 HOH HOH G . N 6 HOH 18 317 317 HOH HOH G . N 6 HOH 19 319 319 HOH HOH G . N 6 HOH 20 320 320 HOH HOH G . N 6 HOH 21 321 321 HOH HOH G . N 6 HOH 22 334 334 HOH HOH G . N 6 HOH 23 335 335 HOH HOH G . N 6 HOH 24 336 336 HOH HOH G . N 6 HOH 25 337 337 HOH HOH G . N 6 HOH 26 338 338 HOH HOH G . N 6 HOH 27 343 343 HOH HOH G . N 6 HOH 28 344 344 HOH HOH G . N 6 HOH 29 352 352 HOH HOH G . N 6 HOH 30 353 353 HOH HOH G . N 6 HOH 31 354 354 HOH HOH G . N 6 HOH 32 356 356 HOH HOH G . N 6 HOH 33 364 364 HOH HOH G . N 6 HOH 34 365 365 HOH HOH G . N 6 HOH 35 366 366 HOH HOH G . N 6 HOH 36 367 367 HOH HOH G . N 6 HOH 37 368 368 HOH HOH G . N 6 HOH 38 369 369 HOH HOH G . N 6 HOH 39 370 370 HOH HOH G . N 6 HOH 40 371 371 HOH HOH G . N 6 HOH 41 375 375 HOH HOH G . N 6 HOH 42 376 376 HOH HOH G . N 6 HOH 43 377 377 HOH HOH G . O 6 HOH 1 355 355 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1.0000000000 0.0000000000 0.0000000000 69.3400000000 0.0000000000 -1.0000000000 0.0000000000 138.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-10-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' # _software.name X-PLOR _software.classification refinement _software.version 1GMD _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEETS PRESENTED AS *S1* AND *S2* ON SHEET RECORDS BELOW ARE ACTUALLY SIX-STRANDED BETA BARRELS. THIS IS REPRESENTED BY SEVEN-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1GMD _pdbx_entry_details.compound_details ;RESIDUES 500 - 505 ARE A PENTAPEPTIDE IN THE ACTIVE SITE AS A TETRAHEDRAL INTERMEDIATE. C OF RESIDUE TYR 504 IS TETRAHEDRAL AND IS COVALENTLY LINKED TO SER 195 OG AND N OF ASP 505. THE CARBOXY TERMINUS OF ASP 505 WAS NOT CLEAR IN THE ELECTRON DENSITY MAP AND HAS NOT BEEN MODELLED. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 TYR _pdbx_validate_rmsd_bond.auth_seq_id_1 504 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 TYR _pdbx_validate_rmsd_bond.auth_seq_id_2 504 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.431 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation 0.202 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B PRO 501 ? ? N B PRO 501 ? ? CD B PRO 501 ? ? 101.82 111.50 -9.68 1.40 N 2 1 CA B TYR 504 ? ? C B TYR 504 ? ? N B ASP 505 ? ? 93.34 117.20 -23.86 2.20 Y 3 1 O B TYR 504 ? ? C B TYR 504 ? ? N B ASP 505 ? ? 86.64 122.70 -36.06 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN F 48 ? ? -173.19 -178.09 2 1 PHE F 71 ? ? -125.29 -52.41 3 1 SER F 115 ? ? -164.50 -152.18 4 1 LEU F 143 ? ? -34.12 140.86 5 1 ARG F 145 ? ? -175.08 134.97 6 1 ALA G 183 ? ? -171.61 145.54 7 1 SER G 195 ? ? -32.71 132.77 8 1 SER G 214 ? ? -122.24 -73.82 9 1 TYR B 504 ? ? -103.71 77.61 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TYR _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 504 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 505 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -113.34 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id TYR _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 504 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -46.77 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ASP _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 505 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.112 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E SER 11 ? CA ? A SER 11 CA 2 1 Y 1 E SER 11 ? C ? A SER 11 C 3 1 Y 1 E SER 11 ? O ? A SER 11 O 4 1 Y 1 E SER 11 ? CB ? A SER 11 CB 5 1 Y 1 E SER 11 ? OG ? A SER 11 OG 6 1 Y 1 B ASP 505 ? C ? D ASP 5 C 7 1 Y 1 B ASP 505 ? O ? D ASP 5 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E GLY 12 ? A GLY 12 2 1 Y 1 E LEU 13 ? A LEU 13 3 1 Y 1 G ALA 149 ? C ALA 1 4 1 Y 1 G ASN 150 ? C ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 HEXANE HEX 6 water HOH #