data_1GMK # _entry.id 1GMK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1GMK pdb_00001gmk 10.2210/pdb1gmk/pdb WWPDB D_1000173620 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-01 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2018-04-18 7 'Structure model' 2 0 2023-11-15 8 'Structure model' 2 1 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Data collection' 10 6 'Structure model' Other 11 7 'Structure model' 'Atomic model' 12 7 'Structure model' 'Data collection' 13 7 'Structure model' 'Database references' 14 7 'Structure model' 'Derived calculations' 15 8 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' diffrn_detector 2 6 'Structure model' pdbx_database_status 3 7 'Structure model' atom_site 4 7 'Structure model' chem_comp_atom 5 7 'Structure model' chem_comp_bond 6 7 'Structure model' database_2 7 7 'Structure model' pdbx_struct_conn_angle 8 7 'Structure model' struct_conn 9 7 'Structure model' struct_conn_type 10 7 'Structure model' struct_site 11 8 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_diffrn_detector.detector' 2 6 'Structure model' '_pdbx_database_status.process_site' 3 7 'Structure model' '_atom_site.auth_atom_id' 4 7 'Structure model' '_atom_site.label_atom_id' 5 7 'Structure model' '_database_2.pdbx_DOI' 6 7 'Structure model' '_database_2.pdbx_database_accession' 7 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 8 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 9 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 10 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 15 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 7 'Structure model' '_pdbx_struct_conn_angle.value' 24 7 'Structure model' '_struct_conn.conn_type_id' 25 7 'Structure model' '_struct_conn.id' 26 7 'Structure model' '_struct_conn.pdbx_dist_value' 27 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 7 'Structure model' '_struct_conn.ptnr1_symmetry' 36 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 7 'Structure model' '_struct_conn.ptnr2_symmetry' 44 7 'Structure model' '_struct_conn_type.id' 45 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 46 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 47 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GMK _pdbx_database_status.recvd_initial_deposition_date 1996-07-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1TK2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE' PDB 2XDC unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 1AV2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1BDW unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS' PDB 1C4D unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1GRM unspecified 'SOLUTION STRUCTURE OF THE GRAMICIDIN A' PDB 1JNO unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1' PDB 1MAG unspecified 'SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,' PDB 1MIC unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL' PDB 1NG8 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES' PDB 1NRM unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES' PDB 1NRU unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+' PDB 1NT5 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO3 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO4 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1NT6 unspecified 'SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL' PDB 1W5U unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' PDB 2IZQ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL' PDB 3L8L unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI' PDB 1AL4 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL' PDB 1ALX unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL' PDB 1ALZ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Doyle, D.A.' 1 'Wallace, B.A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure of the Gramicidin/Potassium Thiocyanate Complex.' J.Mol.Biol. 266 963 ? 1997 JMOBAK UK 0022-2836 0070 ? 9086274 10.1006/JMBI.1996.0837 1 'The Structure of the Gramicidin/Kscn Complex' Biophys.J. 66 A353 ? 1994 BIOJAU US 0006-3495 0030 ? ? ? 2 'Crystalline Ion Complexes of Gramicidin A' Ann.N.Y.Acad.Sci. 435 551 ? 1984 ANYAA9 US 0077-8923 0332 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Doyle, D.A.' 1 ? primary 'Wallace, B.A.' 2 ? 1 'Doyle, D.A.' 3 ? 1 'Wallace, B.A.' 4 ? 2 'Kimball, M.R.' 5 ? 2 'Wallace, B.A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GRAMICIDIN A' 1882.294 4 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn 'THIOCYANATE ION' 58.082 4 ? ? ? ? 4 non-polymer syn METHANOL 32.042 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VALYL GRAMICIDIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' _entity_poly.pdbx_seq_one_letter_code_can VGALAVVVWLWLWLWX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'THIOCYANATE ION' SCN 4 METHANOL MOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP n 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'BREVIBACILLUS BREVIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1393 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 1 1 FVA 1 1 1 FVA FVA B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DLE 4 4 4 DLE DLE B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 DVA 6 6 6 DVA DVA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 DLE 10 10 10 DLE DLE B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 DLE 12 12 12 DLE DLE B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 DLE 14 14 14 DLE DLE B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ETA 16 16 16 ETA ETA B . n C 1 1 FVA 1 1 1 FVA FVA C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 DLE 4 4 4 DLE DLE C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 DVA 6 6 6 DVA DVA C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 DLE 10 10 10 DLE DLE C . n C 1 11 TRP 11 11 11 TRP TRP C . n C 1 12 DLE 12 12 12 DLE DLE C . n C 1 13 TRP 13 13 13 TRP TRP C . n C 1 14 DLE 14 14 14 DLE DLE C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ETA 16 16 16 ETA ETA C . n D 1 1 FVA 1 1 1 FVA FVA D . n D 1 2 GLY 2 2 2 GLY GLY D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 DLE 4 4 4 DLE DLE D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 DVA 6 6 6 DVA DVA D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 DVA 8 8 8 DVA DVA D . n D 1 9 TRP 9 9 9 TRP TRP D . n D 1 10 DLE 10 10 10 DLE DLE D . n D 1 11 TRP 11 11 11 TRP TRP D . n D 1 12 DLE 12 12 12 DLE DLE D . n D 1 13 TRP 13 13 13 TRP TRP D . n D 1 14 DLE 14 14 14 DLE DLE D . n D 1 15 TRP 15 15 15 TRP TRP D . n D 1 16 ETA 16 16 16 ETA ETA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 K 1 17 17 K K A . F 3 SCN 1 18 18 SCN SCN A . G 3 SCN 1 19 19 SCN SCN A . H 4 MOH 1 20 20 MOH MOH A . I 4 MOH 1 21 21 MOH MOH A . J 4 MOH 1 22 22 MOH MOH A . K 4 MOH 1 23 23 MOH MOH A . L 4 MOH 1 24 24 MOH MOH A . M 4 MOH 1 25 25 MOH MOH A . N 2 K 1 17 17 K K B . O 3 SCN 1 18 18 SCN SCN B . P 4 MOH 1 19 19 MOH MOH B . Q 4 MOH 1 20 20 MOH MOH B . R 4 MOH 1 21 21 MOH MOH B . S 4 MOH 1 22 22 MOH MOH B . T 4 MOH 1 23 23 MOH MOH B . U 2 K 1 17 17 K K C . V 3 SCN 1 18 18 SCN SCN C . W 4 MOH 1 19 19 MOH MOH C . X 4 MOH 1 20 20 MOH MOH C . Y 4 MOH 1 21 21 MOH MOH C . Z 4 MOH 1 22 22 MOH MOH C . AA 4 MOH 1 23 23 MOH MOH C . BA 4 MOH 1 24 24 MOH MOH C . CA 2 K 1 17 17 K K D . DA 4 MOH 1 18 18 MOH MOH D . EA 4 MOH 1 19 19 MOH MOH D . FA 4 MOH 1 20 20 MOH MOH D . GA 4 MOH 1 21 21 MOH MOH D . HA 4 MOH 1 22 22 MOH MOH D . IA 4 MOH 1 23 23 MOH MOH D . JA 4 MOH 1 24 24 MOH MOH D . KA 4 MOH 1 25 25 MOH MOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TRP 9 ? CG ? A TRP 9 CG 2 1 Y 1 A TRP 9 ? CD1 ? A TRP 9 CD1 3 1 Y 1 A TRP 9 ? CD2 ? A TRP 9 CD2 4 1 Y 1 A TRP 9 ? NE1 ? A TRP 9 NE1 5 1 Y 1 A TRP 9 ? CE2 ? A TRP 9 CE2 6 1 Y 1 A TRP 9 ? CE3 ? A TRP 9 CE3 7 1 Y 1 A TRP 9 ? CZ2 ? A TRP 9 CZ2 8 1 Y 1 A TRP 9 ? CZ3 ? A TRP 9 CZ3 9 1 Y 1 A TRP 9 ? CH2 ? A TRP 9 CH2 10 1 Y 1 B TRP 15 ? CG ? B TRP 15 CG 11 1 Y 1 B TRP 15 ? CD1 ? B TRP 15 CD1 12 1 Y 1 B TRP 15 ? CD2 ? B TRP 15 CD2 13 1 Y 1 B TRP 15 ? NE1 ? B TRP 15 NE1 14 1 Y 1 B TRP 15 ? CE2 ? B TRP 15 CE2 15 1 Y 1 B TRP 15 ? CE3 ? B TRP 15 CE3 16 1 Y 1 B TRP 15 ? CZ2 ? B TRP 15 CZ2 17 1 Y 1 B TRP 15 ? CZ3 ? B TRP 15 CZ3 18 1 Y 1 B TRP 15 ? CH2 ? B TRP 15 CH2 19 1 Y 1 C TRP 9 ? CG ? C TRP 9 CG 20 1 Y 1 C TRP 9 ? CD1 ? C TRP 9 CD1 21 1 Y 1 C TRP 9 ? CD2 ? C TRP 9 CD2 22 1 Y 1 C TRP 9 ? NE1 ? C TRP 9 NE1 23 1 Y 1 C TRP 9 ? CE2 ? C TRP 9 CE2 24 1 Y 1 C TRP 9 ? CE3 ? C TRP 9 CE3 25 1 Y 1 C TRP 9 ? CZ2 ? C TRP 9 CZ2 26 1 Y 1 C TRP 9 ? CZ3 ? C TRP 9 CZ3 27 1 Y 1 C TRP 9 ? CH2 ? C TRP 9 CH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 CADRAL 'data reduction' . ? 3 SHELX76 'data scaling' . ? 4 X-PLOR phasing 3.1 ? 5 # _cell.entry_id 1GMK _cell.length_a 32.060 _cell.length_b 51.800 _cell.length_c 31.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GMK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1GMK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description 'DATA COLLECTED AT ROOM TEMPERATURE WITH CRYSTAL IN METHANOL.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'CRYSTALLIZED IN METHANOL' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS FAST' _diffrn_detector.pdbx_collection_date 1991-10-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1GMK _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 5476 _reflns.number_all ? _reflns.percent_possible_obs 73.3 _reflns.pdbx_Rmerge_I_obs 0.03250 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.000 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1GMK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 2241 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 83.3 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE LOW TEMPERATURE FACTORS OF ATOMS N OF SCN 1, 2, 3, AND 4 ARE PROBABLY DUE TO POSITIONAL DISORDER OF THE THIOCYANATE MOLECULE WITH THE RESULT THAT OCCASIONALLY THE HEAVY SULFUR ATOM IS SITUATED CLOSE TO THE PRESENT LOCATION OF THE NITROGEN. TWO METHANOL MOLECULES, MOH 5 AND MOH 19, WERE PLACED IN DENSITIES THAT ARE BELIEVED TO BELONG TO COMBINED DISORDERED CONFORMATIONS OF TRP A 15 AND TRP C 9 (MOH 19), AND TRP D 15 AND TRP A 9 (MOH 5). ; _refine.pdbx_starting_model 'GRAMICIDIN/CSCL COMPLEX, THEN GRAMICIDIN/CSSCN COMPLEX, BOTH WITHOUT IONS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 517 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 583 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.78 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 28.14 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.57 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1GMK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1GMK _struct.title 'GRAMICIDIN/KSCN COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GMK _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'GRAMICIDIN, ANTIFUNGAL, ANTIBACTERIAL, ANTIBIOTIC, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN, DOUBLE HELIX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 2 ? O N N 3 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 2 ? V N N 3 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 4 ? AA N N 4 ? BA N N 4 ? CA N N 2 ? DA N N 4 ? EA N N 4 ? FA N N 4 ? GA N N 4 ? HA N N 4 ? IA N N 4 ? JA N N 4 ? KA N N 4 ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00243 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00243 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GMK A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 1 1GMK B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 3 1 1GMK C 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 4 1 1GMK D 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3660 ? 1 MORE -25.2 ? 1 'SSA (A^2)' 4010 ? 2 'ABSA (A^2)' 3870 ? 2 MORE -26.3 ? 2 'SSA (A^2)' 4040 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 C,D,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1 A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N ? ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale16 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale17 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale18 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale19 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale20 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale21 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale22 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N ? ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale24 covale both ? B TRP 11 C ? ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale25 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale26 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale27 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale28 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N ? ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale29 covale both ? C FVA 1 C ? ? ? 1_555 C GLY 2 N ? ? C FVA 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? C ALA 3 C ? ? ? 1_555 C DLE 4 N ? ? C ALA 3 C DLE 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale31 covale both ? C DLE 4 C ? ? ? 1_555 C ALA 5 N ? ? C DLE 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale32 covale both ? C ALA 5 C ? ? ? 1_555 C DVA 6 N ? ? C ALA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale33 covale both ? C DVA 6 C ? ? ? 1_555 C VAL 7 N ? ? C DVA 6 C VAL 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale34 covale both ? C VAL 7 C ? ? ? 1_555 C DVA 8 N ? ? C VAL 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale35 covale both ? C DVA 8 C ? ? ? 1_555 C TRP 9 N ? ? C DVA 8 C TRP 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale36 covale both ? C TRP 9 C ? ? ? 1_555 C DLE 10 N ? ? C TRP 9 C DLE 10 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale37 covale both ? C DLE 10 C ? ? ? 1_555 C TRP 11 N ? ? C DLE 10 C TRP 11 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale38 covale both ? C TRP 11 C ? ? ? 1_555 C DLE 12 N ? ? C TRP 11 C DLE 12 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale39 covale both ? C DLE 12 C ? ? ? 1_555 C TRP 13 N ? ? C DLE 12 C TRP 13 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale40 covale both ? C TRP 13 C ? ? ? 1_555 C DLE 14 N ? ? C TRP 13 C DLE 14 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale41 covale both ? C DLE 14 C ? ? ? 1_555 C TRP 15 N ? ? C DLE 14 C TRP 15 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale42 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N ? ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale43 covale both ? D FVA 1 C ? ? ? 1_555 D GLY 2 N ? ? D FVA 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale44 covale both ? D ALA 3 C ? ? ? 1_555 D DLE 4 N ? ? D ALA 3 D DLE 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale45 covale both ? D DLE 4 C ? ? ? 1_555 D ALA 5 N ? ? D DLE 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale46 covale both ? D ALA 5 C ? ? ? 1_555 D DVA 6 N ? ? D ALA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale47 covale both ? D DVA 6 C ? ? ? 1_555 D VAL 7 N ? ? D DVA 6 D VAL 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale48 covale both ? D VAL 7 C ? ? ? 1_555 D DVA 8 N ? ? D VAL 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale49 covale both ? D DVA 8 C ? ? ? 1_555 D TRP 9 N ? ? D DVA 8 D TRP 9 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale50 covale both ? D TRP 9 C ? ? ? 1_555 D DLE 10 N ? ? D TRP 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale51 covale both ? D DLE 10 C ? ? ? 1_555 D TRP 11 N ? ? D DLE 10 D TRP 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale52 covale both ? D TRP 11 C ? ? ? 1_555 D DLE 12 N ? ? D TRP 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale53 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N ? ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale54 covale both ? D TRP 13 C ? ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale55 covale both ? D DLE 14 C ? ? ? 1_555 D TRP 15 N ? ? D DLE 14 D TRP 15 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale56 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N ? ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A FVA 1 O1 ? ? ? 1_555 E K . K ? ? A FVA 1 A K 17 3_555 ? ? ? ? ? ? ? 3.418 ? ? metalc2 metalc ? ? A FVA 1 O1 ? ? ? 3_545 E K . K ? ? A FVA 1 A K 17 1_555 ? ? ? ? ? ? ? 3.418 ? ? metalc3 metalc ? ? A TRP 13 O ? ? ? 1_555 E K . K ? ? A TRP 13 A K 17 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc4 metalc ? ? E K . K ? ? ? 1_555 B FVA 1 O1 ? ? A K 17 B FVA 1 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc5 metalc ? ? B DVA 6 O ? ? ? 1_555 N K . K ? ? B DVA 6 B K 17 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc6 metalc ? ? B DVA 8 O ? ? ? 1_555 N K . K ? ? B DVA 8 B K 17 1_555 ? ? ? ? ? ? ? 3.097 ? ? metalc7 metalc ? ? C TRP 9 O ? ? ? 1_555 CA K . K ? ? C TRP 9 D K 17 1_555 ? ? ? ? ? ? ? 3.481 ? ? metalc8 metalc ? ? U K . K ? ? ? 1_555 D FVA 1 O1 ? ? C K 17 D FVA 1 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc9 metalc ? ? D DVA 6 O ? ? ? 1_555 CA K . K ? ? D DVA 6 D K 17 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc10 metalc ? ? D DVA 8 O ? ? ? 1_555 CA K . K ? ? D DVA 8 D K 17 1_555 ? ? ? ? ? ? ? 2.761 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? A FVA 1 ? A FVA 1 ? 1_555 K ? E K . ? A K 17 ? 3_555 O1 ? A FVA 1 ? A FVA 1 ? 3_545 89.5 ? 2 O1 ? A FVA 1 ? A FVA 1 ? 1_555 K ? E K . ? A K 17 ? 3_555 O ? A TRP 13 ? A TRP 13 ? 1_555 81.7 ? 3 O1 ? A FVA 1 ? A FVA 1 ? 3_545 K ? E K . ? A K 17 ? 3_555 O ? A TRP 13 ? A TRP 13 ? 1_555 7.8 ? 4 O1 ? A FVA 1 ? A FVA 1 ? 1_555 K ? E K . ? A K 17 ? 3_555 O1 ? B FVA 1 ? B FVA 1 ? 1_555 84.4 ? 5 O1 ? A FVA 1 ? A FVA 1 ? 3_545 K ? E K . ? A K 17 ? 3_555 O1 ? B FVA 1 ? B FVA 1 ? 1_555 6.5 ? 6 O ? A TRP 13 ? A TRP 13 ? 1_555 K ? E K . ? A K 17 ? 3_555 O1 ? B FVA 1 ? B FVA 1 ? 1_555 5.1 ? 7 O ? B DVA 6 ? B DVA 6 ? 1_555 K ? N K . ? B K 17 ? 1_555 O ? B DVA 8 ? B DVA 8 ? 1_555 126.5 ? 8 O ? C TRP 9 ? C TRP 9 ? 1_555 K ? CA K . ? D K 17 ? 1_555 O ? D DVA 6 ? D DVA 6 ? 1_555 99.5 ? 9 O ? C TRP 9 ? C TRP 9 ? 1_555 K ? CA K . ? D K 17 ? 1_555 O ? D DVA 8 ? D DVA 8 ? 1_555 123.5 ? 10 O ? D DVA 6 ? D DVA 6 ? 1_555 K ? CA K . ? D K 17 ? 1_555 O ? D DVA 8 ? D DVA 8 ? 1_555 135.4 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? DA ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel DA 1 2 ? anti-parallel DA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? DLE A 10 ? GLY A 2 DLE A 10 AA 2 DVA B 8 ? DLE B 14 ? DVA B 8 DLE B 14 DA 1 GLY D 2 ? ALA D 3 ? GLY D 2 ALA D 3 DA 2 GLY C 2 ? DLE C 12 ? GLY C 2 DLE C 12 DA 3 DVA D 8 ? DLE D 14 ? DVA D 8 DLE D 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 5 ? N ALA A 5 O TRP B 9 ? O TRP B 9 DA 1 2 N ALA D 3 ? N ALA D 3 O TRP C 11 ? O TRP C 11 DA 2 3 O DLE C 12 ? O DLE C 12 N DVA D 8 ? N DVA D 8 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 17 ? 4 'BINDING SITE FOR RESIDUE K A 17' AC2 Software A SCN 18 ? 5 'BINDING SITE FOR RESIDUE SCN A 18' AC3 Software A SCN 19 ? 2 'BINDING SITE FOR RESIDUE SCN A 19' AC4 Software B K 17 ? 5 'BINDING SITE FOR RESIDUE K B 17' AC5 Software B SCN 18 ? 1 'BINDING SITE FOR RESIDUE SCN B 18' AC6 Software C K 17 ? 1 'BINDING SITE FOR RESIDUE K C 17' AC7 Software C SCN 18 ? 8 'BINDING SITE FOR RESIDUE SCN C 18' AC8 Software D K 17 ? 6 'BINDING SITE FOR RESIDUE K D 17' AC9 Software ? ? ? ? 32 'BINDING SITE FOR CHAIN A OF GRAMICIDIN A' BC1 Software ? ? ? ? 35 'BINDING SITE FOR CHAIN B OF GRAMICIDIN A' BC2 Software ? ? ? ? 32 'BINDING SITE FOR CHAIN C OF GRAMICIDIN A' BC3 Software ? ? ? ? 33 'BINDING SITE FOR CHAIN D OF GRAMICIDIN A' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TRP A 13 ? TRP A 13 . ? 1_555 ? 2 AC1 4 DLE A 14 ? DLE A 14 . ? 1_555 ? 3 AC1 4 TRP A 15 ? TRP A 15 . ? 1_555 ? 4 AC1 4 ETA A 16 ? ETA A 16 . ? 1_555 ? 5 AC2 5 DLE A 4 ? DLE A 4 . ? 1_555 ? 6 AC2 5 ALA A 5 ? ALA A 5 . ? 1_555 ? 7 AC2 5 TRP B 11 ? TRP B 11 . ? 1_555 ? 8 AC2 5 DLE B 12 ? DLE B 12 . ? 1_555 ? 9 AC2 5 DLE B 14 ? DLE B 14 . ? 1_555 ? 10 AC3 2 DLE A 10 ? DLE A 10 . ? 1_555 ? 11 AC3 2 TRP A 11 ? TRP A 11 . ? 1_555 ? 12 AC4 5 TRP A 9 ? TRP A 9 . ? 1_555 ? 13 AC4 5 DLE A 10 ? DLE A 10 . ? 1_555 ? 14 AC4 5 DVA B 6 ? DVA B 6 . ? 1_555 ? 15 AC4 5 VAL B 7 ? VAL B 7 . ? 1_555 ? 16 AC4 5 DVA B 8 ? DVA B 8 . ? 1_555 ? 17 AC5 1 GLY A 2 ? GLY A 2 . ? 3_545 ? 18 AC6 1 ETA C 16 ? ETA C 16 . ? 1_555 ? 19 AC7 8 ALA C 3 ? ALA C 3 . ? 1_555 ? 20 AC7 8 DLE C 4 ? DLE C 4 . ? 1_555 ? 21 AC7 8 ALA C 5 ? ALA C 5 . ? 1_555 ? 22 AC7 8 DVA C 6 ? DVA C 6 . ? 1_555 ? 23 AC7 8 TRP D 9 ? TRP D 9 . ? 1_555 ? 24 AC7 8 TRP D 11 ? TRP D 11 . ? 1_555 ? 25 AC7 8 DLE D 12 ? DLE D 12 . ? 1_555 ? 26 AC7 8 DLE D 14 ? DLE D 14 . ? 1_555 ? 27 AC8 6 TRP C 9 ? TRP C 9 . ? 1_555 ? 28 AC8 6 TRP C 11 ? TRP C 11 . ? 1_555 ? 29 AC8 6 ALA D 5 ? ALA D 5 . ? 1_555 ? 30 AC8 6 DVA D 6 ? DVA D 6 . ? 1_555 ? 31 AC8 6 VAL D 7 ? VAL D 7 . ? 1_555 ? 32 AC8 6 DVA D 8 ? DVA D 8 . ? 1_555 ? 33 AC9 32 K E . ? K A 17 . ? 3_555 ? 34 AC9 32 K E . ? K A 17 . ? 1_555 ? 35 AC9 32 SCN F . ? SCN A 18 . ? 1_555 ? 36 AC9 32 SCN G . ? SCN A 19 . ? 1_555 ? 37 AC9 32 GLY B 2 ? GLY B 2 . ? 3_555 ? 38 AC9 32 GLY B 2 ? GLY B 2 . ? 1_555 ? 39 AC9 32 ALA B 3 ? ALA B 3 . ? 1_555 ? 40 AC9 32 DLE B 4 ? DLE B 4 . ? 1_555 ? 41 AC9 32 ALA B 5 ? ALA B 5 . ? 1_555 ? 42 AC9 32 DVA B 6 ? DVA B 6 . ? 1_555 ? 43 AC9 32 VAL B 7 ? VAL B 7 . ? 1_555 ? 44 AC9 32 DVA B 8 ? DVA B 8 . ? 1_555 ? 45 AC9 32 TRP B 9 ? TRP B 9 . ? 1_555 ? 46 AC9 32 DLE B 10 ? DLE B 10 . ? 1_555 ? 47 AC9 32 TRP B 11 ? TRP B 11 . ? 1_555 ? 48 AC9 32 DLE B 12 ? DLE B 12 . ? 1_555 ? 49 AC9 32 TRP B 13 ? TRP B 13 . ? 1_555 ? 50 AC9 32 DLE B 14 ? DLE B 14 . ? 1_555 ? 51 AC9 32 TRP B 15 ? TRP B 15 . ? 3_545 ? 52 AC9 32 ETA B 16 ? ETA B 16 . ? 1_555 ? 53 AC9 32 K N . ? K B 17 . ? 1_555 ? 54 AC9 32 SCN O . ? SCN B 18 . ? 3_555 ? 55 AC9 32 DLE C 4 ? DLE C 4 . ? 1_455 ? 56 AC9 32 VAL C 7 ? VAL C 7 . ? 1_555 ? 57 AC9 32 TRP C 11 ? TRP C 11 . ? 1_455 ? 58 AC9 32 DLE C 12 ? DLE C 12 . ? 1_455 ? 59 AC9 32 DLE C 14 ? DLE C 14 . ? 1_555 ? 60 AC9 32 TRP C 15 ? TRP C 15 . ? 1_555 ? 61 AC9 32 TRP D 9 ? TRP D 9 . ? 1_455 ? 62 AC9 32 DLE D 10 ? DLE D 10 . ? 1_455 ? 63 AC9 32 TRP D 11 ? TRP D 11 . ? 4_456 ? 64 AC9 32 TRP D 15 ? TRP D 15 . ? 4_455 ? 65 BC1 35 GLY A 2 ? GLY A 2 . ? 1_555 ? 66 BC1 35 GLY A 2 ? GLY A 2 . ? 3_545 ? 67 BC1 35 ALA A 3 ? ALA A 3 . ? 1_555 ? 68 BC1 35 DLE A 4 ? DLE A 4 . ? 1_555 ? 69 BC1 35 ALA A 5 ? ALA A 5 . ? 1_555 ? 70 BC1 35 DVA A 6 ? DVA A 6 . ? 1_555 ? 71 BC1 35 VAL A 7 ? VAL A 7 . ? 1_555 ? 72 BC1 35 DVA A 8 ? DVA A 8 . ? 1_555 ? 73 BC1 35 TRP A 9 ? TRP A 9 . ? 1_555 ? 74 BC1 35 DLE A 10 ? DLE A 10 . ? 1_555 ? 75 BC1 35 TRP A 11 ? TRP A 11 . ? 1_555 ? 76 BC1 35 DLE A 12 ? DLE A 12 . ? 1_555 ? 77 BC1 35 TRP A 13 ? TRP A 13 . ? 1_555 ? 78 BC1 35 DLE A 14 ? DLE A 14 . ? 1_555 ? 79 BC1 35 TRP A 15 ? TRP A 15 . ? 3_555 ? 80 BC1 35 ETA A 16 ? ETA A 16 . ? 1_555 ? 81 BC1 35 ETA A 16 ? ETA A 16 . ? 3_555 ? 82 BC1 35 K E . ? K A 17 . ? 1_555 ? 83 BC1 35 SCN F . ? SCN A 18 . ? 1_555 ? 84 BC1 35 K N . ? K B 17 . ? 1_555 ? 85 BC1 35 SCN O . ? SCN B 18 . ? 1_555 ? 86 BC1 35 DVA C 6 ? DVA C 6 . ? 4_455 ? 87 BC1 35 VAL C 7 ? VAL C 7 . ? 1_555 ? 88 BC1 35 TRP C 11 ? TRP C 11 . ? 1_455 ? 89 BC1 35 DLE C 12 ? DLE C 12 . ? 2_555 ? 90 BC1 35 TRP C 15 ? TRP C 15 . ? 2_554 ? 91 BC1 35 DLE D 4 ? DLE D 4 . ? 2_554 ? 92 BC1 35 DVA D 6 ? DVA D 6 . ? 1_555 ? 93 BC1 35 TRP D 9 ? TRP D 9 . ? 1_455 ? 94 BC1 35 DLE D 10 ? DLE D 10 . ? 1_455 ? 95 BC1 35 TRP D 11 ? TRP D 11 . ? 4_456 ? 96 BC1 35 TRP D 11 ? TRP D 11 . ? 1_455 ? 97 BC1 35 TRP D 13 ? TRP D 13 . ? 1_555 ? 98 BC1 35 DLE D 14 ? DLE D 14 . ? 1_555 ? 99 BC1 35 TRP D 15 ? TRP D 15 . ? 4_455 ? 100 BC2 32 DLE A 4 ? DLE A 4 . ? 1_655 ? 101 BC2 32 VAL A 7 ? VAL A 7 . ? 1_555 ? 102 BC2 32 TRP A 11 ? TRP A 11 . ? 1_655 ? 103 BC2 32 TRP A 13 ? TRP A 13 . ? 1_555 ? 104 BC2 32 DLE B 4 ? DLE B 4 . ? 2_555 ? 105 BC2 32 TRP B 9 ? TRP B 9 . ? 1_655 ? 106 BC2 32 TRP B 11 ? TRP B 11 . ? 4_555 ? 107 BC2 32 TRP B 13 ? TRP B 13 . ? 1_555 ? 108 BC2 32 K U . ? K C 17 . ? 1_555 ? 109 BC2 32 K U . ? K C 17 . ? 3_655 ? 110 BC2 32 SCN V . ? SCN C 18 . ? 1_555 ? 111 BC2 32 GLY D 2 ? GLY D 2 . ? 3_655 ? 112 BC2 32 GLY D 2 ? GLY D 2 . ? 1_555 ? 113 BC2 32 ALA D 3 ? ALA D 3 . ? 1_555 ? 114 BC2 32 DLE D 4 ? DLE D 4 . ? 1_555 ? 115 BC2 32 ALA D 5 ? ALA D 5 . ? 1_555 ? 116 BC2 32 DVA D 6 ? DVA D 6 . ? 1_555 ? 117 BC2 32 VAL D 7 ? VAL D 7 . ? 1_555 ? 118 BC2 32 DVA D 8 ? DVA D 8 . ? 1_555 ? 119 BC2 32 TRP D 9 ? TRP D 9 . ? 1_555 ? 120 BC2 32 DLE D 10 ? DLE D 10 . ? 1_555 ? 121 BC2 32 TRP D 11 ? TRP D 11 . ? 1_555 ? 122 BC2 32 DLE D 12 ? DLE D 12 . ? 1_555 ? 123 BC2 32 TRP D 13 ? TRP D 13 . ? 1_555 ? 124 BC2 32 TRP D 13 ? TRP D 13 . ? 3_645 ? 125 BC2 32 DLE D 14 ? DLE D 14 . ? 3_645 ? 126 BC2 32 DLE D 14 ? DLE D 14 . ? 1_555 ? 127 BC2 32 TRP D 15 ? TRP D 15 . ? 3_645 ? 128 BC2 32 TRP D 15 ? TRP D 15 . ? 1_555 ? 129 BC2 32 ETA D 16 ? ETA D 16 . ? 3_645 ? 130 BC2 32 ETA D 16 ? ETA D 16 . ? 1_555 ? 131 BC2 32 K CA . ? K D 17 . ? 1_555 ? 132 BC3 33 DLE A 4 ? DLE A 4 . ? 1_655 ? 133 BC3 33 DVA A 6 ? DVA A 6 . ? 4_556 ? 134 BC3 33 TRP A 9 ? TRP A 9 . ? 4_555 ? 135 BC3 33 TRP A 11 ? TRP A 11 . ? 1_655 ? 136 BC3 33 DLE B 4 ? DLE B 4 . ? 2_555 ? 137 BC3 33 DVA B 6 ? DVA B 6 . ? 1_555 ? 138 BC3 33 DVA B 8 ? DVA B 8 . ? 2_554 ? 139 BC3 33 TRP B 9 ? TRP B 9 . ? 1_655 ? 140 BC3 33 DLE B 10 ? DLE B 10 . ? 1_655 ? 141 BC3 33 TRP B 11 ? TRP B 11 . ? 4_555 ? 142 BC3 33 TRP B 13 ? TRP B 13 . ? 1_555 ? 143 BC3 33 DLE B 14 ? DLE B 14 . ? 1_555 ? 144 BC3 33 DLE B 14 ? DLE B 14 . ? 4_556 ? 145 BC3 33 GLY C 2 ? GLY C 2 . ? 3_645 ? 146 BC3 33 GLY C 2 ? GLY C 2 . ? 1_555 ? 147 BC3 33 ALA C 3 ? ALA C 3 . ? 1_555 ? 148 BC3 33 DLE C 4 ? DLE C 4 . ? 1_555 ? 149 BC3 33 ALA C 5 ? ALA C 5 . ? 1_555 ? 150 BC3 33 DVA C 6 ? DVA C 6 . ? 1_555 ? 151 BC3 33 VAL C 7 ? VAL C 7 . ? 1_555 ? 152 BC3 33 DVA C 8 ? DVA C 8 . ? 1_555 ? 153 BC3 33 TRP C 9 ? TRP C 9 . ? 1_555 ? 154 BC3 33 DLE C 10 ? DLE C 10 . ? 1_555 ? 155 BC3 33 TRP C 11 ? TRP C 11 . ? 1_555 ? 156 BC3 33 DLE C 12 ? DLE C 12 . ? 1_555 ? 157 BC3 33 TRP C 13 ? TRP C 13 . ? 1_555 ? 158 BC3 33 DLE C 14 ? DLE C 14 . ? 1_555 ? 159 BC3 33 TRP C 15 ? TRP C 15 . ? 3_655 ? 160 BC3 33 TRP C 15 ? TRP C 15 . ? 1_555 ? 161 BC3 33 ETA C 16 ? ETA C 16 . ? 3_655 ? 162 BC3 33 K U . ? K C 17 . ? 1_555 ? 163 BC3 33 SCN V . ? SCN C 18 . ? 1_555 ? 164 BC3 33 K CA . ? K D 17 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 13 ? ? 179.64 174.99 2 1 TRP A 15 ? ? -153.88 4.96 3 1 DLE B 4 ? ? 84.84 132.53 4 1 DVA B 6 ? ? 115.39 122.45 5 1 ALA C 3 ? ? 178.04 103.06 6 1 ALA C 5 ? ? -170.32 108.55 7 1 TRP C 11 ? ? -176.35 124.50 8 1 TRP C 15 ? ? -125.86 -95.77 9 1 DLE D 4 ? ? 108.69 158.16 10 1 DVA D 6 ? ? 77.22 154.15 11 1 TRP D 15 ? ? -161.81 118.04 # _pdbx_molecule_features.prd_id PRD_000150 _pdbx_molecule_features.name 'GRAMICIDIN A' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 0). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000150 A 2 PRD_000150 B 3 PRD_000150 C 4 PRD_000150 D # _pdbx_entry_details.entry_id 1GMK _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D HERE, GRAMICIDIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DLE N N N N 14 DLE CA C N R 15 DLE CB C N N 16 DLE CG C N N 17 DLE CD1 C N N 18 DLE CD2 C N N 19 DLE C C N N 20 DLE O O N N 21 DLE OXT O N N 22 DLE H H N N 23 DLE H2 H N N 24 DLE HA H N N 25 DLE HB2 H N N 26 DLE HB3 H N N 27 DLE HG H N N 28 DLE HD11 H N N 29 DLE HD12 H N N 30 DLE HD13 H N N 31 DLE HD21 H N N 32 DLE HD22 H N N 33 DLE HD23 H N N 34 DLE HXT H N N 35 DVA N N N N 36 DVA CA C N R 37 DVA CB C N N 38 DVA CG1 C N N 39 DVA CG2 C N N 40 DVA C C N N 41 DVA O O N N 42 DVA OXT O N N 43 DVA H H N N 44 DVA H2 H N N 45 DVA HA H N N 46 DVA HB H N N 47 DVA HG11 H N N 48 DVA HG12 H N N 49 DVA HG13 H N N 50 DVA HG21 H N N 51 DVA HG22 H N N 52 DVA HG23 H N N 53 DVA HXT H N N 54 ETA CA C N N 55 ETA N N N N 56 ETA C C N N 57 ETA O O N N 58 ETA HA1 H N N 59 ETA HA2 H N N 60 ETA H H N N 61 ETA H2 H N N 62 ETA HB1 H N N 63 ETA HB2 H N N 64 ETA HO H N N 65 FVA C C N N 66 FVA N N N N 67 FVA O O N N 68 FVA CA C N S 69 FVA CB C N N 70 FVA CG1 C N N 71 FVA CG2 C N N 72 FVA H H N N 73 FVA HA H N N 74 FVA HB H N N 75 FVA HG11 H N N 76 FVA HG12 H N N 77 FVA HG13 H N N 78 FVA HG21 H N N 79 FVA HG22 H N N 80 FVA HG23 H N N 81 FVA O1 O N N 82 FVA CN C N N 83 FVA HN H N N 84 FVA OXT O N N 85 FVA HXT H N N 86 GLY N N N N 87 GLY CA C N N 88 GLY C C N N 89 GLY O O N N 90 GLY OXT O N N 91 GLY H H N N 92 GLY H2 H N N 93 GLY HA2 H N N 94 GLY HA3 H N N 95 GLY HXT H N N 96 K K K N N 97 MOH C C N N 98 MOH O O N N 99 MOH H1 H N N 100 MOH H2 H N N 101 MOH H3 H N N 102 MOH HO H N N 103 SCN S S N N 104 SCN C C N N 105 SCN N N N N 106 TRP N N N N 107 TRP CA C N S 108 TRP C C N N 109 TRP O O N N 110 TRP CB C N N 111 TRP CG C Y N 112 TRP CD1 C Y N 113 TRP CD2 C Y N 114 TRP NE1 N Y N 115 TRP CE2 C Y N 116 TRP CE3 C Y N 117 TRP CZ2 C Y N 118 TRP CZ3 C Y N 119 TRP CH2 C Y N 120 TRP OXT O N N 121 TRP H H N N 122 TRP H2 H N N 123 TRP HA H N N 124 TRP HB2 H N N 125 TRP HB3 H N N 126 TRP HD1 H N N 127 TRP HE1 H N N 128 TRP HE3 H N N 129 TRP HZ2 H N N 130 TRP HZ3 H N N 131 TRP HH2 H N N 132 TRP HXT H N N 133 VAL N N N N 134 VAL CA C N S 135 VAL C C N N 136 VAL O O N N 137 VAL CB C N N 138 VAL CG1 C N N 139 VAL CG2 C N N 140 VAL OXT O N N 141 VAL H H N N 142 VAL H2 H N N 143 VAL HA H N N 144 VAL HB H N N 145 VAL HG11 H N N 146 VAL HG12 H N N 147 VAL HG13 H N N 148 VAL HG21 H N N 149 VAL HG22 H N N 150 VAL HG23 H N N 151 VAL HXT H N N 152 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DLE N CA sing N N 13 DLE N H sing N N 14 DLE N H2 sing N N 15 DLE CA CB sing N N 16 DLE CA C sing N N 17 DLE CA HA sing N N 18 DLE CB CG sing N N 19 DLE CB HB2 sing N N 20 DLE CB HB3 sing N N 21 DLE CG CD1 sing N N 22 DLE CG CD2 sing N N 23 DLE CG HG sing N N 24 DLE CD1 HD11 sing N N 25 DLE CD1 HD12 sing N N 26 DLE CD1 HD13 sing N N 27 DLE CD2 HD21 sing N N 28 DLE CD2 HD22 sing N N 29 DLE CD2 HD23 sing N N 30 DLE C O doub N N 31 DLE C OXT sing N N 32 DLE OXT HXT sing N N 33 DVA N CA sing N N 34 DVA N H sing N N 35 DVA N H2 sing N N 36 DVA CA CB sing N N 37 DVA CA C sing N N 38 DVA CA HA sing N N 39 DVA CB CG1 sing N N 40 DVA CB CG2 sing N N 41 DVA CB HB sing N N 42 DVA CG1 HG11 sing N N 43 DVA CG1 HG12 sing N N 44 DVA CG1 HG13 sing N N 45 DVA CG2 HG21 sing N N 46 DVA CG2 HG22 sing N N 47 DVA CG2 HG23 sing N N 48 DVA C O doub N N 49 DVA C OXT sing N N 50 DVA OXT HXT sing N N 51 ETA CA N sing N N 52 ETA CA C sing N N 53 ETA CA HA1 sing N N 54 ETA CA HA2 sing N N 55 ETA N H sing N N 56 ETA N H2 sing N N 57 ETA C O sing N N 58 ETA C HB1 sing N N 59 ETA C HB2 sing N N 60 ETA O HO sing N N 61 FVA O C doub N N 62 FVA C CA sing N N 63 FVA H N sing N N 64 FVA N CN sing N N 65 FVA N CA sing N N 66 FVA CB CA sing N N 67 FVA CA HA sing N N 68 FVA HB CB sing N N 69 FVA CB CG2 sing N N 70 FVA CB CG1 sing N N 71 FVA HG13 CG1 sing N N 72 FVA HG12 CG1 sing N N 73 FVA CG1 HG11 sing N N 74 FVA HG22 CG2 sing N N 75 FVA HG23 CG2 sing N N 76 FVA CG2 HG21 sing N N 77 FVA CN O1 doub N N 78 FVA HN CN sing N N 79 FVA C OXT sing N N 80 FVA OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 MOH C O sing N N 91 MOH C H1 sing N N 92 MOH C H2 sing N N 93 MOH C H3 sing N N 94 MOH O HO sing N N 95 SCN S C sing N N 96 SCN C N trip N N 97 TRP N CA sing N N 98 TRP N H sing N N 99 TRP N H2 sing N N 100 TRP CA C sing N N 101 TRP CA CB sing N N 102 TRP CA HA sing N N 103 TRP C O doub N N 104 TRP C OXT sing N N 105 TRP CB CG sing N N 106 TRP CB HB2 sing N N 107 TRP CB HB3 sing N N 108 TRP CG CD1 doub Y N 109 TRP CG CD2 sing Y N 110 TRP CD1 NE1 sing Y N 111 TRP CD1 HD1 sing N N 112 TRP CD2 CE2 doub Y N 113 TRP CD2 CE3 sing Y N 114 TRP NE1 CE2 sing Y N 115 TRP NE1 HE1 sing N N 116 TRP CE2 CZ2 sing Y N 117 TRP CE3 CZ3 doub Y N 118 TRP CE3 HE3 sing N N 119 TRP CZ2 CH2 doub Y N 120 TRP CZ2 HZ2 sing N N 121 TRP CZ3 CH2 sing Y N 122 TRP CZ3 HZ3 sing N N 123 TRP CH2 HH2 sing N N 124 TRP OXT HXT sing N N 125 VAL N CA sing N N 126 VAL N H sing N N 127 VAL N H2 sing N N 128 VAL CA C sing N N 129 VAL CA CB sing N N 130 VAL CA HA sing N N 131 VAL C O doub N N 132 VAL C OXT sing N N 133 VAL CB CG1 sing N N 134 VAL CB CG2 sing N N 135 VAL CB HB sing N N 136 VAL CG1 HG11 sing N N 137 VAL CG1 HG12 sing N N 138 VAL CG1 HG13 sing N N 139 VAL CG2 HG21 sing N N 140 VAL CG2 HG22 sing N N 141 VAL CG2 HG23 sing N N 142 VAL OXT HXT sing N N 143 # _pdbx_initial_refinement_model.accession_code 1C4D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'GRAMICIDIN/CSCL COMPLEX, THEN GRAMICIDIN/CSSCN COMPLEX, BOTH WITHOUT IONS' # _atom_sites.entry_id 1GMK _atom_sites.fract_transf_matrix[1][1] 0.031192 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019305 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032216 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O S # loop_