HEADER HORMONE/GROWTH FACTOR 19-SEP-01 1GMN TITLE CRYSTAL STRUCTURES OF NK1-HEPARIN COMPLEXES REVEAL THE BASIS FOR NK1 TITLE 2 ACTIVITY AND ENABLE ENGINEERING OF POTENT AGONISTS OF THE MET TITLE 3 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NK1; COMPND 5 SYNONYM: SCATTER FACTOR, SF, HEPATOPOEITIN A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: NK1 DIMER IN COMPLEX WITH HEPARIN MOLECULE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: YEAST; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC-9K KEYWDS HGF/SF, HORMONE/GROWTH FACTOR, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.LIETHA,D.Y.CHIRGADZE,B.MULLOY,T.L.BLUNDELL,E.GHERARDI REVDAT 8 13-NOV-24 1GMN 1 REMARK REVDAT 7 13-DEC-23 1GMN 1 REMARK HETSYN LINK REVDAT 6 29-JUL-20 1GMN 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 12-JUL-17 1GMN 1 REVDAT 4 27-APR-11 1GMN 1 VERSN REVDAT 3 24-FEB-09 1GMN 1 VERSN REVDAT 2 28-NOV-01 1GMN 1 JRNL REVDAT 1 02-OCT-01 1GMN 0 JRNL AUTH D.LIETHA,D.Y.CHIRGADZE,B.MULLOY,T.L.BLUNDELL,E.GHERARDI JRNL TITL CRYSTAL STRUCTURES OF NK1-HEPARIN COMPLEXES REVEAL THE BASIS JRNL TITL 2 FOR NK1 ACTIVITY AND ENABLE ENGINEERING OF POTENT AGONISTS JRNL TITL 3 OF THE MET RECEPTOR JRNL REF EMBO J. V. 20 5543 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11597998 JRNL DOI 10.1093/EMBOJ/20.20.5543 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 19580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2783 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 125 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.98000 REMARK 3 B22 (A**2) : -7.98000 REMARK 3 B33 (A**2) : 15.97000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 21.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.700 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.940 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 45.69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : EPE.PAR REMARK 3 PARAMETER FILE 4 : HEPARIN.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : EPE.TOP REMARK 3 TOPOLOGY FILE 4 : HEPARIN.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1GMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1290005978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 21.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1NK1 AND 1BHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 8% ETHYLENE GLYCOL, 0.55M REMARK 280 SODIUM DIHYDROGEN PHOSPHATE 0.10M SODIUM HEPES, PH 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.87500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.31250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.43750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.31250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.43750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A ENGINEERED MUTATION: VAL(29)ALA, ASP(72)ASN REMARK 400 CHAIN B ENGINEERED MUTATION: VAL(29)ALA, ASP(72)ASN REMARK 400 REMARK 400 FUNCTION:HEPATOCYTE GROWTH FACTOR IS A POTENT MITOGEN FOR REMARK 400 MATURE HEPATOCYTES AND ACTS AS A GROWTH FACTOR FOR A RANGE REMARK 400 OF TISSUE AND CELL TYPES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 28 REMARK 465 VAL A 29 REMARK 465 GLU A 30 REMARK 465 GLY A 31 REMARK 465 GLN A 32 REMARK 465 ARG A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ARG A 36 REMARK 465 ASN A 37 REMARK 465 VAL A 209 REMARK 465 GLU A 210 REMARK 465 TYR B 28 REMARK 465 VAL B 29 REMARK 465 GLU B 30 REMARK 465 GLY B 31 REMARK 465 GLN B 32 REMARK 465 ARG B 33 REMARK 465 LYS B 34 REMARK 465 ARG B 35 REMARK 465 ARG B 36 REMARK 465 ASN B 37 REMARK 465 THR B 38 REMARK 465 ILE B 39 REMARK 465 HIS B 40 REMARK 465 GLU B 41 REMARK 465 LYS B 52 REMARK 465 ILE B 53 REMARK 465 ASP B 54 REMARK 465 PRO B 55 REMARK 465 ALA B 56 REMARK 465 LEU B 57 REMARK 465 LYS B 58 REMARK 465 ILE B 59 REMARK 465 LYS B 60 REMARK 465 THR B 61 REMARK 465 LYS B 62 REMARK 465 LYS B 63 REMARK 465 VAL B 64 REMARK 465 ASN B 65 REMARK 465 THR B 66 REMARK 465 ALA B 67 REMARK 465 ASP B 68 REMARK 465 GLN B 69 REMARK 465 CYS B 70 REMARK 465 ALA B 71 REMARK 465 ASP B 72 REMARK 465 ARG B 73 REMARK 465 CYS B 74 REMARK 465 THR B 75 REMARK 465 ARG B 76 REMARK 465 ASN B 77 REMARK 465 LYS B 78 REMARK 465 GLY B 79 REMARK 465 LEU B 80 REMARK 465 PRO B 81 REMARK 465 PHE B 82 REMARK 465 THR B 83 REMARK 465 VAL B 88 REMARK 465 PHE B 89 REMARK 465 ASP B 90 REMARK 465 LYS B 91 REMARK 465 ALA B 92 REMARK 465 ARG B 93 REMARK 465 LYS B 94 REMARK 465 GLN B 95 REMARK 465 CYS B 96 REMARK 465 LEU B 97 REMARK 465 SER B 105 REMARK 465 SER B 106 REMARK 465 GLY B 107 REMARK 465 VAL B 108 REMARK 465 LYS B 109 REMARK 465 LYS B 110 REMARK 465 GLU B 111 REMARK 465 PHE B 112 REMARK 465 GLY B 113 REMARK 465 HIS B 114 REMARK 465 GLU B 115 REMARK 465 PHE B 116 REMARK 465 ASP B 117 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 40 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ILE A 53 CG1 CG2 CD1 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 ARG A 76 CD NE CZ NH1 NH2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 MET A 104 SD CE REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 156 CG1 CG2 CD1 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 GLU A 184 CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 GLU A 208 CA C O CB CG CD OE1 REMARK 470 GLU A 208 OE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LEU B 50 CG CD1 CD2 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 TRP B 98 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 98 CZ3 CH2 REMARK 470 MET B 104 CG SD CE REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 173 CG CD OE1 NE2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 GLU B 210 CA C O CB CG CD OE1 REMARK 470 GLU B 210 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 153.81 170.21 REMARK 500 PRO A 55 -96.77 -50.01 REMARK 500 ALA A 56 -111.51 -2.86 REMARK 500 LYS A 62 132.04 -172.84 REMARK 500 PRO A 81 25.38 -66.24 REMARK 500 PRO A 100 30.35 -86.31 REMARK 500 ARG A 126 122.05 -38.67 REMARK 500 SER A 141 47.67 -142.09 REMARK 500 GLU A 174 -131.77 47.89 REMARK 500 ALA B 46 136.10 -39.18 REMARK 500 LYS B 47 84.37 39.40 REMARK 500 THR B 49 158.85 176.04 REMARK 500 SER B 103 -0.36 -51.50 REMARK 500 GLU B 174 -130.15 52.75 REMARK 500 VAL B 209 57.24 -101.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IDS C 5 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 IDS C 1 DBREF 1GMN A 28 210 UNP P14210 HGF_HUMAN 28 210 DBREF 1GMN B 28 210 UNP P14210 HGF_HUMAN 28 210 SEQADV 1GMN VAL A 29 UNP P14210 ALA 29 ENGINEERED MUTATION SEQADV 1GMN ASP A 72 UNP P14210 ASN 72 ENGINEERED MUTATION SEQADV 1GMN VAL B 29 UNP P14210 ALA 29 ENGINEERED MUTATION SEQADV 1GMN ASP B 72 UNP P14210 ASN 72 ENGINEERED MUTATION SEQRES 1 A 183 TYR VAL GLU GLY GLN ARG LYS ARG ARG ASN THR ILE HIS SEQRES 2 A 183 GLU PHE LYS LYS SER ALA LYS THR THR LEU ILE LYS ILE SEQRES 3 A 183 ASP PRO ALA LEU LYS ILE LYS THR LYS LYS VAL ASN THR SEQRES 4 A 183 ALA ASP GLN CYS ALA ASP ARG CYS THR ARG ASN LYS GLY SEQRES 5 A 183 LEU PRO PHE THR CYS LYS ALA PHE VAL PHE ASP LYS ALA SEQRES 6 A 183 ARG LYS GLN CYS LEU TRP PHE PRO PHE ASN SER MET SER SEQRES 7 A 183 SER GLY VAL LYS LYS GLU PHE GLY HIS GLU PHE ASP LEU SEQRES 8 A 183 TYR GLU ASN LYS ASP TYR ILE ARG ASN CYS ILE ILE GLY SEQRES 9 A 183 LYS GLY ARG SER TYR LYS GLY THR VAL SER ILE THR LYS SEQRES 10 A 183 SER GLY ILE LYS CYS GLN PRO TRP SER SER MET ILE PRO SEQRES 11 A 183 HIS GLU HIS SER PHE LEU PRO SER SER TYR ARG GLY LYS SEQRES 12 A 183 ASP LEU GLN GLU ASN TYR CYS ARG ASN PRO ARG GLY GLU SEQRES 13 A 183 GLU GLY GLY PRO TRP CYS PHE THR SER ASN PRO GLU VAL SEQRES 14 A 183 ARG TYR GLU VAL CYS ASP ILE PRO GLN CYS SER GLU VAL SEQRES 15 A 183 GLU SEQRES 1 B 183 TYR VAL GLU GLY GLN ARG LYS ARG ARG ASN THR ILE HIS SEQRES 2 B 183 GLU PHE LYS LYS SER ALA LYS THR THR LEU ILE LYS ILE SEQRES 3 B 183 ASP PRO ALA LEU LYS ILE LYS THR LYS LYS VAL ASN THR SEQRES 4 B 183 ALA ASP GLN CYS ALA ASP ARG CYS THR ARG ASN LYS GLY SEQRES 5 B 183 LEU PRO PHE THR CYS LYS ALA PHE VAL PHE ASP LYS ALA SEQRES 6 B 183 ARG LYS GLN CYS LEU TRP PHE PRO PHE ASN SER MET SER SEQRES 7 B 183 SER GLY VAL LYS LYS GLU PHE GLY HIS GLU PHE ASP LEU SEQRES 8 B 183 TYR GLU ASN LYS ASP TYR ILE ARG ASN CYS ILE ILE GLY SEQRES 9 B 183 LYS GLY ARG SER TYR LYS GLY THR VAL SER ILE THR LYS SEQRES 10 B 183 SER GLY ILE LYS CYS GLN PRO TRP SER SER MET ILE PRO SEQRES 11 B 183 HIS GLU HIS SER PHE LEU PRO SER SER TYR ARG GLY LYS SEQRES 12 B 183 ASP LEU GLN GLU ASN TYR CYS ARG ASN PRO ARG GLY GLU SEQRES 13 B 183 GLU GLY GLY PRO TRP CYS PHE THR SER ASN PRO GLU VAL SEQRES 14 B 183 ARG TYR GLU VAL CYS ASP ILE PRO GLN CYS SER GLU VAL SEQRES 15 B 183 GLU HET IDS C 1 17 HET SGN C 2 19 HET IDS C 3 16 HET SGN C 4 19 HET IDS C 5 15 HET EPE A 306 15 HET EPE B 301 15 HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN EPE HEPES FORMUL 3 IDS 3(C6 H10 O10 S) FORMUL 3 SGN 2(C6 H13 N O11 S2) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 6 HOH *67(H2 O) HELIX 1 AA1 THR A 38 HIS A 40 5 3 HELIX 2 AA2 THR A 66 ARG A 76 1 11 HELIX 3 AA3 ASP A 123 ILE A 125 5 3 HELIX 4 AA4 LEU A 163 TYR A 167 5 5 HELIX 5 AA5 LYS B 122 ILE B 125 5 4 HELIX 6 AA6 LEU B 163 ARG B 168 5 6 SHEET 1 AA1 5 PHE A 42 ILE A 51 0 SHEET 2 AA1 5 LYS A 109 ASN A 121 -1 O GLU A 120 N LYS A 43 SHEET 3 AA1 5 ALA A 86 ASP A 90 -1 N PHE A 87 O TYR A 119 SHEET 4 AA1 5 GLN A 95 PHE A 99 -1 O PHE A 99 N ALA A 86 SHEET 5 AA1 5 LYS A 60 LYS A 63 -1 N LYS A 60 O TRP A 98 SHEET 1 AA2 2 TRP A 188 PHE A 190 0 SHEET 2 AA2 2 TYR A 198 VAL A 200 -1 O GLU A 199 N CYS A 189 SHEET 1 AA3 3 LYS B 43 LYS B 44 0 SHEET 2 AA3 3 TYR B 119 GLU B 120 -1 O GLU B 120 N LYS B 43 SHEET 3 AA3 3 ALA B 86 PHE B 87 -1 N PHE B 87 O TYR B 119 SHEET 1 AA4 2 TRP B 188 PHE B 190 0 SHEET 2 AA4 2 TYR B 198 VAL B 200 -1 O GLU B 199 N CYS B 189 SSBOND 1 CYS A 74 CYS A 84 1555 1555 2.96 SSBOND 2 CYS A 128 CYS A 206 1555 1555 2.79 SSBOND 3 CYS A 149 CYS A 189 1555 1555 2.03 SSBOND 4 CYS A 177 CYS A 201 1555 1555 2.03 SSBOND 5 CYS B 128 CYS B 206 1555 1555 2.89 SSBOND 6 CYS B 149 CYS B 189 1555 1555 2.04 SSBOND 7 CYS B 177 CYS B 201 1555 1555 2.03 LINK O4 IDS C 1 C1 SGN C 2 1555 1555 1.40 LINK O4 SGN C 2 C1 IDS C 3 1555 1555 1.40 LINK O4 IDS C 3 C1 SGN C 4 1555 1555 1.41 LINK O4 SGN C 4 C1 IDS C 5 1555 1555 1.41 CISPEP 1 ILE A 156 PRO A 157 0 -0.06 CISPEP 2 ILE B 156 PRO B 157 0 0.06 CRYST1 86.560 86.560 117.750 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008492 0.00000