HEADER TRANSCRIPTION REGULATION 12-OCT-98 1GNF TITLE SOLUTION STRUCTURE OF THE N-TERMINAL ZINC FINGER OF MURINE GATA-1, TITLE 2 NMR, 25 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR GATA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL ZINC FINGER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS ZINC FINGER, TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR K.KOWALSKI,R.CZOLIJ,G.F.KING,M.CROSSLEY,J.P.MACKAY REVDAT 3 29-NOV-17 1GNF 1 REMARK HELIX REVDAT 2 24-FEB-09 1GNF 1 VERSN REVDAT 1 08-JUN-99 1GNF 0 JRNL AUTH K.KOWALSKI,R.CZOLIJ,G.F.KING,M.CROSSLEY,J.P.MACKAY JRNL TITL THE SOLUTION STRUCTURE OF THE N-TERMINAL ZINC FINGER OF JRNL TITL 2 GATA-1 REVEALS A SPECIFIC BINDING FACE FOR THE JRNL TITL 3 TRANSCRIPTIONAL CO-FACTOR FOG. JRNL REF J.BIOMOL.NMR V. 13 249 1999 JRNL REFN ISSN 0925-2738 JRNL PMID 10212985 JRNL DOI 10.1023/A:1008309602929 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1GNF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173632. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 95% H2O:5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY; DQFCOSY; NOESY; ECOSY; REMARK 210 HSQC; TOCSY-HSQC; NOESY-HSQC; J- REMARK 210 MODULATED HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX600; DRX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA 2.12, X-PLOR 3.843 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESIDUAL RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR 1H, AND REMARK 210 HETERONUCLEAR 1H/15N NMR SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 218 H GLY A 221 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 200 -80.18 -48.09 REMARK 500 1 ALA A 201 -160.60 -68.24 REMARK 500 1 ASN A 206 -60.85 -91.95 REMARK 500 1 ALA A 209 106.51 -50.24 REMARK 500 1 ASP A 218 -160.61 -122.24 REMARK 500 1 HIS A 222 -163.82 -79.51 REMARK 500 1 ASN A 226 -72.68 174.10 REMARK 500 1 PRO A 240 -73.63 -73.12 REMARK 500 1 LEU A 241 -169.49 66.71 REMARK 500 2 SER A 199 71.22 42.63 REMARK 500 2 GLU A 200 -78.09 -53.68 REMARK 500 2 ALA A 201 169.20 -49.87 REMARK 500 2 CYS A 204 108.18 -49.26 REMARK 500 2 LEU A 214 137.15 65.90 REMARK 500 2 ASP A 218 -160.11 -124.68 REMARK 500 2 HIS A 222 -166.71 -71.76 REMARK 500 2 ASN A 226 -81.67 167.78 REMARK 500 2 PRO A 240 -164.84 -74.11 REMARK 500 3 SER A 199 40.03 -173.74 REMARK 500 3 PRO A 213 -155.18 -69.90 REMARK 500 3 LEU A 214 118.69 -37.32 REMARK 500 3 ASP A 218 -162.88 -128.02 REMARK 500 3 HIS A 222 -166.70 -74.73 REMARK 500 3 LEU A 224 173.99 -55.44 REMARK 500 3 ASN A 226 -76.15 168.08 REMARK 500 3 LEU A 241 -164.03 -117.36 REMARK 500 4 SER A 199 27.14 46.78 REMARK 500 4 ARG A 216 124.94 -175.78 REMARK 500 4 ASP A 218 -157.71 -127.56 REMARK 500 4 LEU A 224 173.21 -53.33 REMARK 500 4 ASN A 226 -56.68 69.87 REMARK 500 4 MET A 234 -61.88 -93.72 REMARK 500 4 LEU A 241 -97.60 -108.95 REMARK 500 4 ILE A 242 -76.11 -93.93 REMARK 500 5 SER A 199 27.97 -143.55 REMARK 500 5 GLU A 200 -78.00 -53.94 REMARK 500 5 ALA A 211 72.17 -111.02 REMARK 500 5 LEU A 214 119.03 69.02 REMARK 500 5 ARG A 216 121.51 63.44 REMARK 500 5 ASP A 218 -163.93 -126.14 REMARK 500 5 CYS A 225 42.71 -100.66 REMARK 500 5 ASN A 226 -56.93 67.94 REMARK 500 5 GLN A 237 -164.23 -79.55 REMARK 500 5 LEU A 241 -126.94 -142.77 REMARK 500 6 SER A 199 25.12 47.22 REMARK 500 6 ASN A 206 -61.42 -91.77 REMARK 500 6 LEU A 214 140.52 -172.18 REMARK 500 6 TRP A 215 -72.11 -98.27 REMARK 500 6 ARG A 216 126.40 61.38 REMARK 500 6 ASP A 218 -163.16 -123.67 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 202 0.31 SIDE CHAIN REMARK 500 1 ARG A 216 0.32 SIDE CHAIN REMARK 500 1 ARG A 217 0.25 SIDE CHAIN REMARK 500 1 ARG A 219 0.29 SIDE CHAIN REMARK 500 1 ARG A 239 0.23 SIDE CHAIN REMARK 500 2 ARG A 202 0.21 SIDE CHAIN REMARK 500 2 ARG A 216 0.19 SIDE CHAIN REMARK 500 2 ARG A 217 0.26 SIDE CHAIN REMARK 500 2 ARG A 219 0.31 SIDE CHAIN REMARK 500 2 ARG A 239 0.14 SIDE CHAIN REMARK 500 2 ARG A 243 0.20 SIDE CHAIN REMARK 500 3 ARG A 202 0.25 SIDE CHAIN REMARK 500 3 ARG A 216 0.32 SIDE CHAIN REMARK 500 3 ARG A 217 0.11 SIDE CHAIN REMARK 500 3 ARG A 219 0.25 SIDE CHAIN REMARK 500 3 ARG A 239 0.20 SIDE CHAIN REMARK 500 3 ARG A 243 0.31 SIDE CHAIN REMARK 500 4 ARG A 202 0.30 SIDE CHAIN REMARK 500 4 ARG A 216 0.31 SIDE CHAIN REMARK 500 4 ARG A 217 0.31 SIDE CHAIN REMARK 500 4 ARG A 219 0.29 SIDE CHAIN REMARK 500 4 ARG A 239 0.21 SIDE CHAIN REMARK 500 4 ARG A 243 0.32 SIDE CHAIN REMARK 500 5 ARG A 202 0.30 SIDE CHAIN REMARK 500 5 ARG A 216 0.31 SIDE CHAIN REMARK 500 5 ARG A 217 0.19 SIDE CHAIN REMARK 500 5 ARG A 219 0.15 SIDE CHAIN REMARK 500 5 ARG A 239 0.15 SIDE CHAIN REMARK 500 5 ARG A 243 0.23 SIDE CHAIN REMARK 500 6 ARG A 216 0.13 SIDE CHAIN REMARK 500 6 ARG A 217 0.31 SIDE CHAIN REMARK 500 6 ARG A 219 0.19 SIDE CHAIN REMARK 500 6 ARG A 239 0.22 SIDE CHAIN REMARK 500 6 ARG A 243 0.31 SIDE CHAIN REMARK 500 7 ARG A 202 0.29 SIDE CHAIN REMARK 500 7 ARG A 216 0.20 SIDE CHAIN REMARK 500 7 ARG A 217 0.31 SIDE CHAIN REMARK 500 7 ARG A 219 0.31 SIDE CHAIN REMARK 500 7 ARG A 239 0.31 SIDE CHAIN REMARK 500 7 ARG A 243 0.22 SIDE CHAIN REMARK 500 8 ARG A 202 0.29 SIDE CHAIN REMARK 500 8 ARG A 216 0.32 SIDE CHAIN REMARK 500 8 ARG A 217 0.32 SIDE CHAIN REMARK 500 8 ARG A 219 0.32 SIDE CHAIN REMARK 500 8 ARG A 239 0.14 SIDE CHAIN REMARK 500 8 ARG A 243 0.21 SIDE CHAIN REMARK 500 9 ARG A 202 0.28 SIDE CHAIN REMARK 500 9 ARG A 216 0.24 SIDE CHAIN REMARK 500 9 ARG A 217 0.20 SIDE CHAIN REMARK 500 9 ARG A 219 0.17 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 143 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 244 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 204 SG REMARK 620 2 CYS A 207 SG 109.6 REMARK 620 3 CYS A 225 SG 109.1 109.4 REMARK 620 4 CYS A 228 SG 109.0 110.7 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 244 DBREF 1GNF A 198 243 UNP P17679 GATA1_MOUSE 198 243 SEQADV 1GNF GLY A 198 UNP P17679 PRO 198 CLONING ARTIFACT SEQADV 1GNF SER A 199 UNP P17679 CYS 199 CLONING ARTIFACT SEQRES 1 A 46 GLY SER GLU ALA ARG GLU CYS VAL ASN CYS GLY ALA THR SEQRES 2 A 46 ALA THR PRO LEU TRP ARG ARG ASP ARG THR GLY HIS TYR SEQRES 3 A 46 LEU CYS ASN ALA CYS GLY LEU TYR HIS LYS MET ASN GLY SEQRES 4 A 46 GLN ASN ARG PRO LEU ILE ARG HET ZN A 244 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 H1 ASN A 226 ASN A 235 1 10 LINK ZN ZN A 244 SG CYS A 204 1555 1555 2.30 LINK ZN ZN A 244 SG CYS A 207 1555 1555 2.31 LINK ZN ZN A 244 SG CYS A 225 1555 1555 2.30 LINK ZN ZN A 244 SG CYS A 228 1555 1555 2.30 SITE 1 AC1 4 CYS A 204 CYS A 207 CYS A 225 CYS A 228 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1