HEADER HYDROLASE 20-OCT-01 1GO8 TITLE THE METZINCIN'S METHIONINE: PRTC M226L MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE C; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA CHRYSANTHEMI; SOURCE 3 ORGANISM_TAXID: 556; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PUC18 KEYWDS HYDROLASE, METALLOPROTEASE, PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR U.BAUMANN REVDAT 2 24-FEB-09 1GO8 1 VERSN REVDAT 1 17-OCT-02 1GO8 0 JRNL AUTH T.HEGE,R.E.FELTZER,R.D.GRAY,U.BAUMANN JRNL TITL CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PSEUDOMONAS JRNL TITL 2 AERUGINOSA ALKALINE PROTEASE AND ITS COGNATE JRNL TITL 3 INHIBITOR: INHIBITION BY A ZINC-NH2 COORDINATIVE JRNL TITL 4 BOND JRNL REF J.BIOL.CHEM. V. 276 35087 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11445573 JRNL DOI 10.1074/JBC.M104020200 REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0.36 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3590 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4878 ; 1.739 ; 1.909 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 5.698 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;14.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2887 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1656 ; 0.223 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 513 ; 0.152 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 35 ; 0.115 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.198 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.177 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 1.801 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3559 ; 2.438 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 2.977 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 4.252 ; 5.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GO8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-01. REMARK 100 THE PDBE ID CODE IS EBI-8737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI-FILTER REMARK 200 OPTICS : YALE-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PRTC WILDTYPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS:PH 6.5, NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.43400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.86800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.86800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.43400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 153.02250 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 88.34758 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.43360 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION: RESIDUE MET (226) LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA P 18 REMARK 465 ASN P 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH P 2045 - O HOH P 2119 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG P 174 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP P 208 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP P 237 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP P 249 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP P 386 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP P 415 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR P 137 -7.21 -141.31 REMARK 500 GLN P 149 -63.90 -123.12 REMARK 500 TYR P 202 146.28 -173.93 REMARK 500 ASN P 355 -163.66 -121.01 REMARK 500 SER P 396 69.71 -157.09 REMARK 500 ALA P 400 60.29 -155.41 REMARK 500 ILE P 411 -54.08 -124.60 REMARK 500 ASP P 430 13.91 -153.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1480 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER P 269 OG REMARK 620 2 ASP P 297 OD1 123.6 REMARK 620 3 ASP P 297 OD2 73.7 52.7 REMARK 620 4 GLY P 299 O 160.0 73.8 125.5 REMARK 620 5 ASP P 302 OD1 120.0 64.6 73.9 74.9 REMARK 620 6 ASP P 302 OD2 86.6 100.9 82.3 100.5 40.0 REMARK 620 7 ARG P 265 O 86.1 79.7 91.5 87.8 143.2 171.6 REMARK 620 8 GLY P 267 O 79.4 155.9 151.5 82.3 112.7 86.6 96.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1481 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU P 341 OE2 REMARK 620 2 ASP P 302 OD1 84.9 REMARK 620 3 GLU P 341 OE1 53.0 137.6 REMARK 620 4 THR P 339 O 86.8 94.2 89.1 REMARK 620 5 HOH P2294 O 129.5 143.9 76.7 97.7 REMARK 620 6 GLY P 300 O 86.7 84.2 87.8 173.5 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1482 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA P 365 O REMARK 620 2 GLY P 346 O 82.6 REMARK 620 3 GLY P 348 O 83.7 98.0 REMARK 620 4 ASP P 350 OD2 158.9 82.8 83.3 REMARK 620 5 ASP P 368 OD1 107.2 169.5 79.8 86.7 REMARK 620 6 ASP P 368 OD2 75.9 140.1 112.3 124.6 48.6 REMARK 620 7 GLY P 363 O 104.6 87.0 170.9 89.8 94.0 67.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1483 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 377 OD2 REMARK 620 2 ALA P 357 O 117.5 REMARK 620 3 ASN P 359 OD1 116.6 82.2 REMARK 620 4 GLY P 372 O 67.2 173.3 91.4 REMARK 620 5 ASP P 377 OD1 47.7 80.4 83.9 101.0 REMARK 620 6 ASN P 355 O 148.2 89.0 82.2 88.2 163.5 REMARK 620 7 ALA P 374 O 77.3 91.0 166.1 94.8 107.0 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1484 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 366 O REMARK 620 2 GLY P 364 O 107.3 REMARK 620 3 ASP P 368 OD2 82.7 79.5 REMARK 620 4 GLY P 381 O 172.1 79.7 95.2 REMARK 620 5 ALA P 383 O 74.4 84.4 146.6 110.5 REMARK 620 6 ASP P 386 OD1 85.9 160.6 88.3 86.4 113.4 REMARK 620 7 ASP P 386 OD2 109.2 133.5 132.6 66.7 78.8 49.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1485 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 384 O REMARK 620 2 GLN P 408 OE1 90.0 REMARK 620 3 GLY P 382 O 110.0 95.0 REMARK 620 4 ASP P 412 OD1 82.9 94.7 163.8 REMARK 620 5 ASP P 386 OD2 83.2 165.1 75.1 97.5 REMARK 620 6 ASP P 412 OD2 116.7 76.2 132.2 39.1 118.7 REMARK 620 7 HOH P2346 O 165.1 94.3 83.8 82.6 95.6 51.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P1487 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 377 OD2 REMARK 620 2 GLY P 373 O 88.0 REMARK 620 3 ASP P 395 O 169.2 85.3 REMARK 620 4 ASP P 402 OD1 92.0 162.3 96.9 REMARK 620 5 HOH P2339 O 91.6 78.6 95.3 83.7 REMARK 620 6 GLY P 375 O 84.4 109.8 90.0 87.8 170.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P1486 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 188 NE2 REMARK 620 2 HIS P 198 NE2 116.4 REMARK 620 3 HIS P 192 NE2 102.8 99.0 REMARK 620 4 PO4 P1488 O2 126.0 106.3 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 P1488 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GO7 RELATED DB: PDB REMARK 900 THE METZINCIN'S METHIONINE: PRTC M226C-E189K REMARK 900 DOUBLE MUTANT DBREF 1GO8 P 18 479 UNP P16317 PRTC_ERWCH 18 479 SEQADV 1GO8 LEU P 226 UNP P16317 MET 226 ENGINEERED MUTATION SEQRES 1 P 462 ALA ASN THR SER SER ALA TYR ASN SER VAL TYR ASP PHE SEQRES 2 P 462 LEU ARG TYR HIS ASP ARG GLY ASP GLY LEU THR VAL ASN SEQRES 3 P 462 GLY LYS THR SER TYR SER ILE ASP GLN ALA ALA ALA GLN SEQRES 4 P 462 ILE THR ARG GLU ASN VAL SER TRP ASN GLY THR ASN VAL SEQRES 5 P 462 PHE GLY LYS SER ALA ASN LEU THR PHE LYS PHE LEU GLN SEQRES 6 P 462 SER VAL SER SER ILE PRO SER GLY ASP THR GLY PHE VAL SEQRES 7 P 462 LYS PHE ASN ALA GLU GLN ILE GLU GLN ALA LYS LEU SER SEQRES 8 P 462 LEU GLN SER TRP SER ASP VAL ALA ASN LEU THR PHE THR SEQRES 9 P 462 GLU VAL THR GLY ASN LYS SER ALA ASN ILE THR PHE GLY SEQRES 10 P 462 ASN TYR THR ARG ASP ALA SER GLY ASN LEU ASP TYR GLY SEQRES 11 P 462 THR GLN ALA TYR ALA TYR TYR PRO GLY ASN TYR GLN GLY SEQRES 12 P 462 ALA GLY SER SER TRP TYR ASN TYR ASN GLN SER ASN ILE SEQRES 13 P 462 ARG ASN PRO GLY SER GLU GLU TYR GLY ARG GLN THR PHE SEQRES 14 P 462 THR HIS GLU ILE GLY HIS ALA LEU GLY LEU ALA HIS PRO SEQRES 15 P 462 GLY GLU TYR ASN ALA GLY GLU GLY ASP PRO SER TYR ASN SEQRES 16 P 462 ASP ALA VAL TYR ALA GLU ASP SER TYR GLN PHE SER ILE SEQRES 17 P 462 LEU SER TYR TRP GLY GLU ASN GLU THR GLY ALA ASP TYR SEQRES 18 P 462 ASN GLY HIS TYR GLY GLY ALA PRO MET ILE ASP ASP ILE SEQRES 19 P 462 ALA ALA ILE GLN ARG LEU TYR GLY ALA ASN MET THR THR SEQRES 20 P 462 ARG THR GLY ASP SER VAL TYR GLY PHE ASN SER ASN THR SEQRES 21 P 462 ASP ARG ASP PHE TYR THR ALA THR ASP SER SER LYS ALA SEQRES 22 P 462 LEU ILE PHE SER VAL TRP ASP ALA GLY GLY THR ASP THR SEQRES 23 P 462 PHE ASP PHE SER GLY TYR SER ASN ASN GLN ARG ILE ASN SEQRES 24 P 462 LEU ASN GLU GLY SER PHE SER ASP VAL GLY GLY LEU LYS SEQRES 25 P 462 GLY ASN VAL SER ILE ALA HIS GLY VAL THR ILE GLU ASN SEQRES 26 P 462 ALA ILE GLY GLY SER GLY ASN ASP ILE LEU VAL GLY ASN SEQRES 27 P 462 SER ALA ASP ASN ILE LEU GLN GLY GLY ALA GLY ASN ASP SEQRES 28 P 462 VAL LEU TYR GLY GLY ALA GLY ALA ASP THR LEU TYR GLY SEQRES 29 P 462 GLY ALA GLY ARG ASP THR PHE VAL TYR GLY SER GLY GLN SEQRES 30 P 462 ASP SER THR VAL ALA ALA TYR ASP TRP ILE ALA ASP PHE SEQRES 31 P 462 GLN LYS GLY ILE ASP LYS ILE ASP LEU SER ALA PHE ARG SEQRES 32 P 462 ASN GLU GLY GLN LEU SER PHE VAL GLN ASP GLN PHE THR SEQRES 33 P 462 GLY LYS GLY GLN GLU VAL MET LEU GLN TRP ASP ALA ALA SEQRES 34 P 462 ASN SER ILE THR ASN LEU TRP LEU HIS GLU ALA GLY HIS SEQRES 35 P 462 SER SER VAL ASP PHE LEU VAL ARG ILE VAL GLY GLN ALA SEQRES 36 P 462 ALA GLN SER ASP ILE ILE VAL HET CA P1480 1 HET CA P1481 1 HET CA P1482 1 HET CA P1483 1 HET CA P1484 1 HET CA P1485 1 HET ZN P1486 1 HET CA P1487 1 HET PO4 P1488 5 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 CA 7(CA 2+) FORMUL 8 ZN ZN 2+ FORMUL 10 PO4 O4 P 3- FORMUL 11 HOH *386(H2 O1) HELIX 1 1 SER P 21 LEU P 31 1 11 HELIX 2 2 SER P 49 THR P 58 1 10 HELIX 3 3 ASN P 98 ASP P 114 1 17 HELIX 4 4 GLN P 170 ASN P 175 1 6 HELIX 5 5 GLU P 179 LEU P 194 1 16 HELIX 6 6 SER P 210 ALA P 214 5 5 HELIX 7 7 GLY P 230 GLY P 235 5 6 HELIX 8 8 MET P 247 GLY P 259 1 13 HELIX 9 9 ARG P 279 TYR P 282 5 4 HELIX 10 10 SER P 392 SER P 396 5 5 HELIX 11 11 VAL P 398 TYR P 401 5 4 HELIX 12 12 SER P 417 GLY P 423 5 7 HELIX 13 13 ALA P 473 SER P 475 5 3 SHEET 1 PA 2 THR P 41 VAL P 42 0 SHEET 2 PA 2 LYS P 45 THR P 46 -1 O LYS P 45 N VAL P 42 SHEET 1 PB 2 VAL P 62 SER P 63 0 SHEET 2 PB 2 GLY P 66 THR P 67 -1 O GLY P 66 N SER P 63 SHEET 1 PC 5 LEU P 118 GLU P 122 0 SHEET 2 PC 5 ALA P 74 PHE P 80 1 O ALA P 74 N THR P 119 SHEET 3 PC 5 ILE P 131 TYR P 136 1 O ILE P 131 N LYS P 79 SHEET 4 PC 5 SER P 163 ASN P 167 1 O SER P 164 N GLY P 134 SHEET 5 PC 5 ALA P 150 ALA P 152 -1 O TYR P 151 N TRP P 165 SHEET 1 PD10 VAL P 270 GLY P 272 0 SHEET 2 PD10 THR P 303 ASP P 305 1 O THR P 303 N TYR P 271 SHEET 3 PD10 ASN P 342 ILE P 344 1 O ASN P 342 N PHE P 304 SHEET 4 PD10 ILE P 360 GLN P 362 1 O ILE P 360 N ALA P 343 SHEET 5 PD10 THR P 378 TYR P 380 1 O THR P 378 N LEU P 361 SHEET 6 PD10 ASP P 402 ILE P 404 1 O TRP P 403 N LEU P 379 SHEET 7 PD10 PHE P 464 VAL P 469 1 O LEU P 465 N ASP P 402 SHEET 8 PD10 ILE P 449 HIS P 455 -1 O THR P 450 N ILE P 468 SHEET 9 PD10 GLU P 438 ASP P 444 -1 O GLU P 438 N HIS P 455 SHEET 10 PD10 SER P 426 PHE P 427 1 O SER P 426 N VAL P 439 SHEET 1 PE 3 PHE P 293 VAL P 295 0 SHEET 2 PE 3 VAL P 332 ILE P 334 1 O SER P 333 N VAL P 295 SHEET 3 PE 3 PHE P 322 SER P 323 -1 O SER P 323 N VAL P 332 SHEET 1 PF 6 ARG P 314 ASN P 316 0 SHEET 2 PF 6 ILE P 351 VAL P 353 1 O ILE P 351 N ILE P 315 SHEET 3 PF 6 VAL P 369 TYR P 371 1 O VAL P 369 N LEU P 352 SHEET 4 PF 6 THR P 387 VAL P 389 1 O THR P 387 N LEU P 370 SHEET 5 PF 6 LYS P 413 ASP P 415 1 O LYS P 413 N PHE P 388 SHEET 6 PF 6 ILE P 477 ILE P 478 1 N ILE P 478 O ILE P 414 LINK CA CA P1480 OG SER P 269 1555 1555 2.43 LINK CA CA P1480 OD1 ASP P 297 1555 1555 2.46 LINK CA CA P1480 OD2 ASP P 297 1555 1555 2.51 LINK CA CA P1480 O GLY P 299 1555 1555 2.28 LINK CA CA P1480 OD1 ASP P 302 1555 1555 3.39 LINK CA CA P1480 OD2 ASP P 302 1555 1555 2.34 LINK CA CA P1480 O ARG P 265 1555 1555 2.36 LINK CA CA P1480 O GLY P 267 1555 1555 2.41 LINK CA CA P1481 OE2 GLU P 341 1555 1555 2.42 LINK CA CA P1481 OD1 ASP P 302 1555 1555 2.34 LINK CA CA P1481 OE1 GLU P 341 1555 1555 2.42 LINK CA CA P1481 O THR P 339 1555 1555 2.37 LINK CA CA P1481 O HOH P2294 1555 1555 2.42 LINK CA CA P1481 O GLY P 300 1555 1555 2.36 LINK CA CA P1482 O ALA P 365 1555 1555 2.33 LINK CA CA P1482 O GLY P 346 1555 1555 2.33 LINK CA CA P1482 O GLY P 348 1555 1555 2.48 LINK CA CA P1482 OD2 ASP P 350 1555 1555 2.36 LINK CA CA P1482 OD1 ASP P 368 1555 1555 2.27 LINK CA CA P1482 OD2 ASP P 368 1555 1555 2.83 LINK CA CA P1482 O GLY P 363 1555 1555 2.36 LINK CA CA P1483 OD2 ASP P 377 1555 1555 2.91 LINK CA CA P1483 O ALA P 357 1555 1555 2.33 LINK CA CA P1483 OD1 ASN P 359 1555 1555 2.34 LINK CA CA P1483 O GLY P 372 1555 1555 2.38 LINK CA CA P1483 OD1 ASP P 377 1555 1555 2.38 LINK CA CA P1483 O ASN P 355 1555 1555 2.33 LINK CA CA P1483 O ALA P 374 1555 1555 2.26 LINK CA CA P1484 O GLY P 364 1555 1555 2.38 LINK CA CA P1484 OD2 ASP P 368 1555 1555 2.37 LINK CA CA P1484 O GLY P 381 1555 1555 2.34 LINK CA CA P1484 O ALA P 383 1555 1555 2.30 LINK CA CA P1484 OD1 ASP P 386 1555 1555 2.27 LINK CA CA P1484 OD2 ASP P 386 1555 1555 2.74 LINK CA CA P1484 O GLY P 366 1555 1555 2.48 LINK CA CA P1485 OE1 GLN P 408 1555 1555 2.26 LINK CA CA P1485 O GLY P 382 1555 1555 2.41 LINK CA CA P1485 OD1 ASP P 412 1555 1555 2.52 LINK CA CA P1485 OD2 ASP P 386 1555 1555 2.25 LINK CA CA P1485 OD2 ASP P 412 1555 1555 3.37 LINK CA CA P1485 O HOH P2346 1555 1555 2.55 LINK CA CA P1485 O GLY P 384 1555 1555 2.45 LINK ZN ZN P1486 O2 PO4 P1488 1555 1555 1.67 LINK ZN ZN P1486 NE2 HIS P 192 1555 1555 2.04 LINK ZN ZN P1486 NE2 HIS P 198 1555 1555 1.95 LINK ZN ZN P1486 NE2 HIS P 188 1555 1555 2.11 LINK CA CA P1487 O GLY P 375 1555 1555 2.36 LINK CA CA P1487 O HOH P2339 1555 1555 2.23 LINK CA CA P1487 OD1 ASP P 402 1555 1555 2.35 LINK CA CA P1487 O ASP P 395 1555 1555 2.31 LINK CA CA P1487 O GLY P 373 1555 1555 2.43 LINK CA CA P1487 OD2 ASP P 377 1555 1555 2.27 SITE 1 AC1 6 ARG P 265 GLY P 267 SER P 269 ASP P 297 SITE 2 AC1 6 GLY P 299 ASP P 302 SITE 1 AC2 5 GLY P 300 ASP P 302 THR P 339 GLU P 341 SITE 2 AC2 5 HOH P2294 SITE 1 AC3 6 GLY P 346 GLY P 348 ASP P 350 GLY P 363 SITE 2 AC3 6 ALA P 365 ASP P 368 SITE 1 AC4 6 ASN P 355 ALA P 357 ASN P 359 GLY P 372 SITE 2 AC4 6 ALA P 374 ASP P 377 SITE 1 AC5 6 GLY P 364 GLY P 366 ASP P 368 GLY P 381 SITE 2 AC5 6 ALA P 383 ASP P 386 SITE 1 AC6 6 GLY P 382 GLY P 384 ASP P 386 GLN P 408 SITE 2 AC6 6 ASP P 412 HOH P2346 SITE 1 AC7 4 HIS P 188 HIS P 192 HIS P 198 PO4 P1488 SITE 1 AC8 6 GLY P 373 GLY P 375 ASP P 377 ASP P 395 SITE 2 AC8 6 ASP P 402 HOH P2339 SITE 1 AC9 9 ALA P 150 TYR P 151 HIS P 188 GLU P 189 SITE 2 AC9 9 HIS P 192 HIS P 198 TYR P 228 ZN P1486 SITE 3 AC9 9 HOH P2386 CRYST1 102.015 102.015 121.302 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009802 0.005659 0.000000 0.00000 SCALE2 0.000000 0.011319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000