HEADER CELL WALL BIOSYNTHESIS 03-DEC-01 1GQQ TITLE MURC - CRYSTAL STRUCTURE OF THE APO-ENZYME FROM HAEMOPHILUS INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.2.8; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: APO-ENZYME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CELL WALL BIOSYNTHESIS, PEPTIDOGLYCAN, MUREIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SKARZYNSKI,A.CLEASBY,E.DOMENICI,M.GEVI,J.SHAW REVDAT 4 08-MAY-24 1GQQ 1 REMARK REVDAT 3 28-FEB-18 1GQQ 1 SOURCE REVDAT 2 24-FEB-09 1GQQ 1 VERSN REVDAT 1 15-JUN-03 1GQQ 0 JRNL AUTH T.SKARZYNSKI,A.CLEASBY,E.DOMENICI,M.GEVI,J.SHAW JRNL TITL CRYSTAL STRUCTURES OF UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE JRNL TITL 2 (MURC) FROM HAEMOPHILUS INFLUENZAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.60000 REMARK 3 B22 (A**2) : 2.99000 REMARK 3 B33 (A**2) : -5.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.507 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.374 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.187 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED SIDE CHAINS WERE MODELED REMARK 3 STEREOCHEMICALLY, 6 TLS GROUPS WERE USED IN REFINEMENT. THE TLS REMARK 3 PARAMETERS ARE GIVEN BELOW AND NOT IN THE MAIN TLS SECTION AS REMARK 3 THEY ARE NOT IN A STANDARD FORMAT. REMARK 4 REMARK 4 1GQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1290009064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20892 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION 12MG/ML CONTAINING REMARK 280 10% GLYCEROL MIXED WITH WELL SOLUTION CONTAINING 2.4M AMMONIUM REMARK 280 SULPHATE, 100MM BICINE BUFFER AND 3%ETHANOL., PH 8.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.75400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.74250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.75400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.74250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 ILE A 12 REMARK 465 PRO A 13 REMARK 465 GLU A 14 REMARK 465 MET A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 17 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 LEU A 154 REMARK 465 VAL A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 ALA A 158 REMARK 465 GLY A 159 REMARK 465 LYS A 160 REMARK 465 ASN A 161 REMARK 465 ALA A 162 REMARK 465 HIS A 163 REMARK 465 LEU A 164 REMARK 465 GLY A 165 REMARK 465 ALA A 166 REMARK 465 SER A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 196 REMARK 465 ASP A 197 REMARK 465 HIS A 198 REMARK 465 MET A 199 REMARK 465 ASP A 200 REMARK 465 THR A 201 REMARK 465 TYR A 202 REMARK 465 GLU A 203 REMARK 465 GLY A 204 REMARK 465 ASP A 205 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 ILE B 11 REMARK 465 ILE B 12 REMARK 465 PRO B 13 REMARK 465 GLU B 14 REMARK 465 MET B 15 REMARK 465 ARG B 16 REMARK 465 ARG B 17 REMARK 465 VAL B 18 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 LEU B 154 REMARK 465 VAL B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 ALA B 158 REMARK 465 GLY B 159 REMARK 465 LYS B 160 REMARK 465 ASN B 161 REMARK 465 ALA B 162 REMARK 465 HIS B 163 REMARK 465 LEU B 164 REMARK 465 GLY B 165 REMARK 465 ALA B 166 REMARK 465 SER B 167 REMARK 465 SER B 177 REMARK 465 ASP B 178 REMARK 465 ALA B 179 REMARK 465 SER B 180 REMARK 465 ASP B 197 REMARK 465 HIS B 198 REMARK 465 MET B 199 REMARK 465 ASP B 200 REMARK 465 THR B 201 REMARK 465 TYR B 202 REMARK 465 GLU B 203 REMARK 465 GLY B 204 REMARK 465 ASP B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 436 OG SER A 438 1.91 REMARK 500 NH2 ARG B 368 OD2 ASP B 452 2.00 REMARK 500 O GLU B 93 OG SER B 97 2.11 REMARK 500 O ALA B 71 N GLU B 73 2.14 REMARK 500 O ALA B 108 N LEU B 111 2.14 REMARK 500 O SER B 252 N GLN B 254 2.15 REMARK 500 OD1 ASP A 402 NZ LYS A 417 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 68 CA ILE A 68 CB -0.187 REMARK 500 ASP A 344 CB ASP A 344 CG -0.135 REMARK 500 GLU A 352 CD GLU A 352 OE1 0.069 REMARK 500 ILE A 357 CA ILE A 357 CB -0.139 REMARK 500 LYS A 367 CE LYS A 367 NZ 0.170 REMARK 500 VAL A 429 CB VAL A 429 CG1 -0.164 REMARK 500 VAL A 429 CB VAL A 429 CG2 -0.131 REMARK 500 ASP A 430 CB ASP A 430 CG 0.168 REMARK 500 TRP A 473 C TRP A 473 O -0.115 REMARK 500 LYS B 417 CD LYS B 417 CE 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 256 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 285 CB - CG - CD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU A 317 CB - CG - CD2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 344 CB - CG - OD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASP A 344 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 361 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 383 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 386 CB - CG - OD2 ANGL. DEV. = 9.0 DEGREES REMARK 500 VAL A 429 CG1 - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP A 430 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 452 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 LEU A 453 CB - CG - CD1 ANGL. DEV. = -11.2 DEGREES REMARK 500 LYS A 474 CD - CE - NZ ANGL. DEV. = -18.7 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 146 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 231 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 328 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 344 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 382 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP B 402 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 54 -70.07 -38.96 REMARK 500 ASP A 89 -33.52 -6.04 REMARK 500 ARG A 101 -44.27 84.07 REMARK 500 ILE A 102 119.03 -33.77 REMARK 500 ARG A 116 -54.16 -20.20 REMARK 500 ALA A 143 1.99 -66.54 REMARK 500 ASN A 193 155.29 176.79 REMARK 500 ASP A 261 71.03 39.71 REMARK 500 CYS A 275 177.58 -55.47 REMARK 500 GLU A 305 13.79 -64.99 REMARK 500 ASP A 319 67.32 -118.03 REMARK 500 ARG A 325 54.43 -91.74 REMARK 500 TRP A 364 -68.48 -128.34 REMARK 500 ARG A 377 141.15 89.15 REMARK 500 ALA A 459 27.35 -146.53 REMARK 500 TYR B 43 -168.75 -67.75 REMARK 500 VAL B 55 -79.71 -40.26 REMARK 500 GLU B 72 -2.12 -33.04 REMARK 500 ASP B 89 -36.20 -33.85 REMARK 500 ARG B 116 -71.35 -32.45 REMARK 500 HIS B 119 62.67 -105.88 REMARK 500 GLN B 185 76.99 -111.86 REMARK 500 ASN B 193 170.29 175.67 REMARK 500 ASN B 219 -11.86 -42.18 REMARK 500 TYR B 223 33.91 -97.34 REMARK 500 MET B 236 -5.65 -59.40 REMARK 500 VAL B 239 -58.82 -24.49 REMARK 500 LYS B 241 8.28 -70.00 REMARK 500 GLU B 253 -34.45 -12.94 REMARK 500 ASN B 277 35.11 -96.44 REMARK 500 ASN B 278 11.38 48.18 REMARK 500 GLU B 362 -7.82 -57.82 REMARK 500 ARG B 377 140.29 80.06 REMARK 500 LEU B 384 44.18 -104.89 REMARK 500 ASP B 415 -155.45 -100.74 REMARK 500 THR B 437 -39.95 -35.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GQQ RELATED DB: PDB REMARK 900 MURC - CRYSTAL STRUCTURE OF THE APO-ENZYME FROM HAEMOPHILUS REMARK 900 INFLUENZAE REMARK 900 RELATED ID: 1GQY RELATED DB: PDB REMARK 900 MURC - CRYSTAL STRUCTURE OF THE ENZYME FROM HAEMOPHILUS INFLUENZAE REMARK 900 COMPLEXED WITH AMPPCP DBREF 1GQQ A 1 475 UNP P45066 MURC_HAEIN 1 475 DBREF 1GQQ B 1 475 UNP P45066 MURC_HAEIN 1 475 SEQRES 1 A 475 MET LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 A 475 GLU MET ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 A 475 GLY GLY ALA GLY MET SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 A 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 A 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 A 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 A 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 A 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 A 475 ILE GLN ARG ALA GLN MET LEU ALA GLU ILE MET ARG PHE SEQRES 10 A 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 A 475 THR THR THR ALA MET ILE SER MET ILE TYR THR GLN ALA SEQRES 12 A 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 A 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 A 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 A 475 HIS LEU GLN PRO MET VAL SER VAL VAL THR ASN MET GLU SEQRES 16 A 475 PRO ASP HIS MET ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 A 475 MET LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 A 475 PHE TYR GLY LEU ALA VAL MET CYS ALA ASP ASP PRO VAL SEQRES 19 A 475 LEU MET GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 A 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 A 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 A 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 A 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 A 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 A 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 A 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 A 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 A 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 A 475 GLY ASP LYS ARG ILE VAL MET ILE PHE GLN PRO HIS ARG SEQRES 30 A 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 A 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MET LEU ASP VAL SEQRES 32 A 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 A 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 A 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 A 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 A 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 A 475 LEU ALA GLU SER TRP LYS ASN SEQRES 1 B 475 MET LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 B 475 GLU MET ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 B 475 GLY GLY ALA GLY MET SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 B 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 B 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 B 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 B 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 B 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 B 475 ILE GLN ARG ALA GLN MET LEU ALA GLU ILE MET ARG PHE SEQRES 10 B 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 B 475 THR THR THR ALA MET ILE SER MET ILE TYR THR GLN ALA SEQRES 12 B 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 B 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 B 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 B 475 HIS LEU GLN PRO MET VAL SER VAL VAL THR ASN MET GLU SEQRES 16 B 475 PRO ASP HIS MET ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 B 475 MET LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 B 475 PHE TYR GLY LEU ALA VAL MET CYS ALA ASP ASP PRO VAL SEQRES 19 B 475 LEU MET GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 B 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 B 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 B 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 B 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 B 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 B 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 B 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 B 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 B 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 B 475 GLY ASP LYS ARG ILE VAL MET ILE PHE GLN PRO HIS ARG SEQRES 30 B 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 B 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MET LEU ASP VAL SEQRES 32 B 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 B 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 B 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 B 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 B 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 B 475 LEU ALA GLU SER TRP LYS ASN HELIX 1 1 GLY A 30 GLY A 42 1 13 HELIX 2 2 GLY A 53 GLY A 63 1 11 HELIX 3 3 ALA A 71 GLU A 76 5 6 HELIX 4 4 ASN A 91 LYS A 100 1 10 HELIX 5 5 ARG A 107 PHE A 117 1 11 HELIX 6 6 GLY A 128 ALA A 143 1 16 HELIX 7 7 PHE A 206 ASN A 219 1 14 HELIX 8 8 ASP A 232 GLY A 243 1 12 HELIX 9 9 GLY A 289 GLU A 305 1 17 HELIX 10 10 ALA A 309 ASP A 319 1 11 HELIX 11 11 HIS A 349 TRP A 364 1 16 HELIX 12 12 ARG A 377 SER A 393 1 17 HELIX 13 13 ASP A 415 GLY A 427 1 13 HELIX 14 14 ASP A 436 SER A 438 5 3 HELIX 15 15 GLN A 439 ILE A 448 1 10 HELIX 16 16 SER A 461 ASN A 475 1 15 HELIX 17 17 MET B 31 GLY B 42 1 12 HELIX 18 18 GLY B 53 ALA B 64 1 12 HELIX 19 19 ASN B 91 LYS B 100 1 10 HELIX 20 20 ARG B 107 PHE B 117 1 11 HELIX 21 21 GLY B 128 ALA B 143 1 16 HELIX 22 22 PHE B 206 ASN B 219 1 14 HELIX 23 23 ASP B 232 VAL B 239 1 8 HELIX 24 24 PRO B 240 GLY B 243 5 4 HELIX 25 25 GLY B 289 GLU B 305 1 17 HELIX 26 26 ALA B 309 ASP B 319 1 11 HELIX 27 27 HIS B 349 GLU B 362 1 14 HELIX 28 28 ARG B 377 LEU B 384 1 8 HELIX 29 29 LEU B 384 SER B 393 1 10 HELIX 30 30 ASP B 415 GLY B 427 1 13 HELIX 31 31 ASP B 436 SER B 438 5 3 HELIX 32 32 GLN B 439 ILE B 448 1 10 HELIX 33 33 SER B 461 ASN B 475 1 15 SHEET 1 AA 5 LYS A 65 ILE A 68 0 SHEET 2 AA 5 GLN A 44 ASP A 49 1 O ILE A 45 N LYS A 65 SHEET 3 AA 5 GLN A 20 ILE A 24 1 O ILE A 21 N SER A 46 SHEET 4 AA 5 VAL A 80 VAL A 83 1 O VAL A 80 N HIS A 22 SHEET 5 AA 5 VAL A 104 GLN A 106 1 O ILE A 105 N VAL A 83 SHEET 1 AB 9 THR A 148 VAL A 150 0 SHEET 2 AB 9 TYR A 169 GLU A 173 1 O TYR A 169 N THR A 148 SHEET 3 AB 9 HIS A 119 ALA A 124 1 O HIS A 119 N LEU A 170 SHEET 4 AB 9 VAL A 188 VAL A 191 1 O VAL A 188 N ALA A 122 SHEET 5 AB 9 LEU A 225 CYS A 229 1 O LEU A 225 N SER A 189 SHEET 6 AB 9 GLN A 245 GLY A 250 1 O GLN A 245 N ALA A 226 SHEET 7 AB 9 TYR A 257 THR A 265 1 O TYR A 257 N GLY A 250 SHEET 8 AB 9 GLN A 268 ILE A 274 -1 O GLN A 268 N THR A 265 SHEET 9 AB 9 ARG A 280 LEU A 285 -1 O ILE A 281 N VAL A 273 SHEET 1 AC 6 ASP A 328 ARG A 335 0 SHEET 2 AC 6 GLY A 338 ASP A 345 -1 O GLY A 338 N ARG A 335 SHEET 3 AC 6 ASP A 452 GLY A 458 1 O ASP A 452 N ARG A 341 SHEET 4 AC 6 ARG A 368 GLN A 374 1 O ARG A 368 N LEU A 453 SHEET 5 AC 6 ALA A 397 MET A 400 1 O ALA A 397 N MET A 371 SHEET 6 AC 6 ILE A 432 LEU A 433 1 O ILE A 432 N MET A 400 SHEET 1 BA 5 LYS B 65 ILE B 68 0 SHEET 2 BA 5 GLN B 44 ASP B 49 1 O ILE B 45 N LYS B 65 SHEET 3 BA 5 GLN B 20 ILE B 24 1 O ILE B 21 N SER B 46 SHEET 4 BA 5 VAL B 80 VAL B 83 1 O VAL B 80 N HIS B 22 SHEET 5 BA 5 VAL B 104 ILE B 105 1 O ILE B 105 N VAL B 83 SHEET 1 BB 9 THR B 148 VAL B 150 0 SHEET 2 BB 9 TYR B 169 ALA B 174 1 O TYR B 169 N THR B 148 SHEET 3 BB 9 HIS B 119 ALA B 124 1 O HIS B 119 N LEU B 170 SHEET 4 BB 9 VAL B 188 VAL B 191 1 O VAL B 188 N ALA B 122 SHEET 5 BB 9 LEU B 225 CYS B 229 1 O LEU B 225 N SER B 189 SHEET 6 BB 9 VAL B 246 GLY B 250 1 O ILE B 247 N MET B 228 SHEET 7 BB 9 TYR B 257 THR B 265 1 O TYR B 257 N GLY B 250 SHEET 8 BB 9 GLN B 268 ILE B 274 -1 O GLN B 268 N THR B 265 SHEET 9 BB 9 ARG B 280 LEU B 285 -1 O ILE B 281 N VAL B 273 SHEET 1 BC 6 ASP B 328 ARG B 335 0 SHEET 2 BC 6 GLY B 338 ASP B 345 -1 O GLY B 338 N ARG B 335 SHEET 3 BC 6 LEU B 453 GLN B 457 1 O ILE B 454 N VAL B 343 SHEET 4 BC 6 ILE B 369 PHE B 373 1 O VAL B 370 N LEU B 455 SHEET 5 BC 6 ALA B 397 MET B 400 1 O ALA B 397 N MET B 371 SHEET 6 BC 6 ILE B 432 LEU B 433 1 O ILE B 432 N MET B 400 CRYST1 65.508 99.485 180.590 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005537 0.00000