HEADER CELL WALL BIOSYNTHESIS 06-DEC-01 1GQY TITLE MURC - CRYSTAL STRUCTURE OF THE ENZYME FROM HAEMOPHILUS INFLUENZAE TITLE 2 COMPLEXED WITH AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.2.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CELL WALL BIOSYNTHESIS, PEPTIDOGLYCAN, MUREIN, LIGASE, ATP BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.SKARZYNSKI,A.CLEASBY,E.DOMENICI,M.GEVI,J.SHAW REVDAT 5 13-DEC-23 1GQY 1 LINK REVDAT 4 28-FEB-18 1GQY 1 SOURCE REVDAT 3 28-JUN-17 1GQY 1 REMARK REVDAT 2 24-FEB-09 1GQY 1 VERSN REVDAT 1 13-JUN-03 1GQY 0 JRNL AUTH T.SKARZYNSKI,A.CLEASBY,E.DOMENICI,M.GEVI,J.SHAW JRNL TITL CRYSTAL STRUCTURES OF UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE JRNL TITL 2 (MURC) FROM HAEMOPHILUS INFLUENZAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 88743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4678 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.261 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED SIDE CHAINS WERE MODELLED REMARK 3 STEREOCHEMICALLY REMARK 4 REMARK 4 1GQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1290009070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, ARP/WARP REMARK 200 STARTING MODEL: AN EARLY VERSION OF PDB ENTRY 1GQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE AMPPCP COMPLEX WAS FORMED BY REMARK 280 ADDING 10MM AMPPCP AND 10MM MGCL2 TO THE CONCENTRATED PROTEIN REMARK 280 SOLUTION AT 12MG/ML. CRYSTALS WERE GROWN USING WELL SOLUTION REMARK 280 MADE OF 20%PEG 3350 AND 200MM SODIUM FORMATE, PH 6.8., PH 6.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 198 REMARK 465 MET A 199 REMARK 465 ASP A 200 REMARK 465 THR A 201 REMARK 465 TYR A 202 REMARK 465 GLU A 203 REMARK 465 GLY A 204 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 ASN B 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2291 O HOH A 2399 2.07 REMARK 500 O HOH A 2047 O HOH A 2135 2.11 REMARK 500 O HOH B 2450 O HOH B 2487 2.11 REMARK 500 OE1 GLU A 311 O HOH A 2258 2.12 REMARK 500 O HOH B 2228 O HOH B 2234 2.15 REMARK 500 O HOH A 2076 O HOH A 2243 2.15 REMARK 500 O HOH B 2329 O HOH B 2333 2.15 REMARK 500 O HOH A 2046 O HOH A 2135 2.17 REMARK 500 O HOH A 2245 O HOH A 2309 2.18 REMARK 500 O HOH A 2076 O HOH A 2244 2.18 REMARK 500 O HOH A 2002 O HOH A 2036 2.18 REMARK 500 O HOH B 2123 O HOH B 2358 2.18 REMARK 500 OE1 GLN B 109 O HOH B 2125 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 271 CE2 TYR A 271 CD2 0.096 REMARK 500 TYR A 346 CD1 TYR A 346 CE1 0.094 REMARK 500 VAL B 355 CB VAL B 355 CG1 -0.241 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 228 CG - SD - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 396 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 MET B 228 CG - SD - CE ANGL. DEV. = -18.4 DEGREES REMARK 500 ASP B 261 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 396 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 442 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 445 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 -37.23 -34.46 REMARK 500 GLU A 76 115.86 -38.80 REMARK 500 ILE A 87 157.90 -49.00 REMARK 500 ASN A 193 167.43 176.75 REMARK 500 PRO A 196 -170.06 -61.41 REMARK 500 ARG A 377 138.24 75.79 REMARK 500 ALA A 406 19.51 57.77 REMARK 500 ALA B 179 12.48 54.72 REMARK 500 PHE B 181 7.21 -59.43 REMARK 500 ARG B 377 141.39 76.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2032 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B2033 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B2101 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1477 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 130 OG1 REMARK 620 2 GLU A 173 OE1 89.8 REMARK 620 3 ACP A1476 O1G 162.7 106.4 REMARK 620 4 ACP A1476 O1B 83.6 105.1 86.3 REMARK 620 5 HOH A2125 O 88.2 118.4 89.2 135.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1476 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 130 OG1 REMARK 620 2 GLU B 173 OE1 94.0 REMARK 620 3 ACP B1475 O1B 88.8 105.6 REMARK 620 4 ACP B1475 O2G 166.5 98.6 83.1 REMARK 620 5 HOH B2195 O 91.8 114.3 140.0 87.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A1476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B1475 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GQQ RELATED DB: PDB REMARK 900 MURC - CRYSTAL STRUCTURE OF THE APO-ENZYME FROM HAEMOPHILUS REMARK 900 INFLUENZAE DBREF 1GQY A 1 475 UNP P45066 MURC_HAEIN 1 475 DBREF 1GQY B 1 475 UNP P45066 MURC_HAEIN 1 475 SEQRES 1 A 475 MET LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 A 475 GLU MET ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 A 475 GLY GLY ALA GLY MET SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 A 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 A 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 A 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 A 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 A 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 A 475 ILE GLN ARG ALA GLN MET LEU ALA GLU ILE MET ARG PHE SEQRES 10 A 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 A 475 THR THR THR ALA MET ILE SER MET ILE TYR THR GLN ALA SEQRES 12 A 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 A 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 A 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 A 475 HIS LEU GLN PRO MET VAL SER VAL VAL THR ASN MET GLU SEQRES 16 A 475 PRO ASP HIS MET ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 A 475 MET LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 A 475 PHE TYR GLY LEU ALA VAL MET CYS ALA ASP ASP PRO VAL SEQRES 19 A 475 LEU MET GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 A 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 A 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 A 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 A 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 A 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 A 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 A 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 A 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 A 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 A 475 GLY ASP LYS ARG ILE VAL MET ILE PHE GLN PRO HIS ARG SEQRES 30 A 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 A 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MET LEU ASP VAL SEQRES 32 A 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 A 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 A 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 A 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 A 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 A 475 LEU ALA GLU SER TRP LYS ASN SEQRES 1 B 475 MET LYS HIS SER HIS GLU GLU ILE ARG LYS ILE ILE PRO SEQRES 2 B 475 GLU MET ARG ARG VAL GLN GLN ILE HIS PHE ILE GLY ILE SEQRES 3 B 475 GLY GLY ALA GLY MET SER GLY ILE ALA GLU ILE LEU LEU SEQRES 4 B 475 ASN GLU GLY TYR GLN ILE SER GLY SER ASP ILE ALA ASP SEQRES 5 B 475 GLY VAL VAL THR GLN ARG LEU ALA GLN ALA GLY ALA LYS SEQRES 6 B 475 ILE TYR ILE GLY HIS ALA GLU GLU HIS ILE GLU GLY ALA SEQRES 7 B 475 SER VAL VAL VAL VAL SER SER ALA ILE LYS ASP ASP ASN SEQRES 8 B 475 PRO GLU LEU VAL THR SER LYS GLN LYS ARG ILE PRO VAL SEQRES 9 B 475 ILE GLN ARG ALA GLN MET LEU ALA GLU ILE MET ARG PHE SEQRES 10 B 475 ARG HIS GLY ILE ALA VAL ALA GLY THR HIS GLY LYS THR SEQRES 11 B 475 THR THR THR ALA MET ILE SER MET ILE TYR THR GLN ALA SEQRES 12 B 475 LYS LEU ASP PRO THR PHE VAL ASN GLY GLY LEU VAL LYS SEQRES 13 B 475 SER ALA GLY LYS ASN ALA HIS LEU GLY ALA SER ARG TYR SEQRES 14 B 475 LEU ILE ALA GLU ALA ASP GLU SER ASP ALA SER PHE LEU SEQRES 15 B 475 HIS LEU GLN PRO MET VAL SER VAL VAL THR ASN MET GLU SEQRES 16 B 475 PRO ASP HIS MET ASP THR TYR GLU GLY ASP PHE GLU LYS SEQRES 17 B 475 MET LYS ALA THR TYR VAL LYS PHE LEU HIS ASN LEU PRO SEQRES 18 B 475 PHE TYR GLY LEU ALA VAL MET CYS ALA ASP ASP PRO VAL SEQRES 19 B 475 LEU MET GLU LEU VAL PRO LYS VAL GLY ARG GLN VAL ILE SEQRES 20 B 475 THR TYR GLY PHE SER GLU GLN ALA ASP TYR ARG ILE GLU SEQRES 21 B 475 ASP TYR GLU GLN THR GLY PHE GLN GLY HIS TYR THR VAL SEQRES 22 B 475 ILE CYS PRO ASN ASN GLU ARG ILE ASN VAL LEU LEU ASN SEQRES 23 B 475 VAL PRO GLY LYS HIS ASN ALA LEU ASN ALA THR ALA ALA SEQRES 24 B 475 LEU ALA VAL ALA LYS GLU GLU GLY ILE ALA ASN GLU ALA SEQRES 25 B 475 ILE LEU GLU ALA LEU ALA ASP PHE GLN GLY ALA GLY ARG SEQRES 26 B 475 ARG PHE ASP GLN LEU GLY GLU PHE ILE ARG PRO ASN GLY SEQRES 27 B 475 LYS VAL ARG LEU VAL ASP ASP TYR GLY HIS HIS PRO THR SEQRES 28 B 475 GLU VAL GLY VAL THR ILE LYS ALA ALA ARG GLU GLY TRP SEQRES 29 B 475 GLY ASP LYS ARG ILE VAL MET ILE PHE GLN PRO HIS ARG SEQRES 30 B 475 TYR SER ARG THR ARG ASP LEU PHE ASP ASP PHE VAL GLN SEQRES 31 B 475 VAL LEU SER GLN VAL ASP ALA LEU ILE MET LEU ASP VAL SEQRES 32 B 475 TYR ALA ALA GLY GLU ALA PRO ILE VAL GLY ALA ASP SER SEQRES 33 B 475 LYS SER LEU CYS ARG SER ILE ARG ASN LEU GLY LYS VAL SEQRES 34 B 475 ASP PRO ILE LEU VAL SER ASP THR SER GLN LEU GLY ASP SEQRES 35 B 475 VAL LEU ASP GLN ILE ILE GLN ASP GLY ASP LEU ILE LEU SEQRES 36 B 475 ALA GLN GLY ALA GLY SER VAL SER LYS ILE SER ARG GLY SEQRES 37 B 475 LEU ALA GLU SER TRP LYS ASN HET ACP A1476 31 HET MG A1477 1 HET ACP B1475 31 HET MG B1476 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *925(H2 O) HELIX 1 1 LYS A 2 ILE A 11 1 10 HELIX 2 2 GLY A 30 GLY A 42 1 13 HELIX 3 3 GLY A 53 GLY A 63 1 11 HELIX 4 4 ALA A 71 GLU A 76 5 6 HELIX 5 5 ASN A 91 LYS A 100 1 10 HELIX 6 6 ARG A 107 ARG A 116 1 10 HELIX 7 7 GLY A 128 ALA A 143 1 16 HELIX 8 8 GLU A 176 LEU A 184 5 9 HELIX 9 9 ASP A 205 ASN A 219 1 15 HELIX 10 10 ASP A 232 VAL A 239 1 8 HELIX 11 11 GLY A 289 GLU A 306 1 18 HELIX 12 12 ALA A 309 ASP A 319 1 11 HELIX 13 13 HIS A 349 TRP A 364 1 16 HELIX 14 14 ARG A 377 LEU A 384 1 8 HELIX 15 15 LEU A 384 SER A 393 1 10 HELIX 16 16 ASP A 415 GLY A 427 1 13 HELIX 17 17 ASP A 436 SER A 438 5 3 HELIX 18 18 GLN A 439 ILE A 448 1 10 HELIX 19 19 SER A 461 ASN A 475 1 15 HELIX 20 20 GLU B 6 ILE B 11 1 6 HELIX 21 21 GLY B 30 GLY B 42 1 13 HELIX 22 22 GLY B 53 GLY B 63 1 11 HELIX 23 23 ALA B 71 GLU B 76 5 6 HELIX 24 24 ASN B 91 LYS B 100 1 10 HELIX 25 25 ARG B 107 ARG B 116 1 10 HELIX 26 26 GLY B 128 ALA B 143 1 16 HELIX 27 27 GLU B 176 LEU B 184 5 9 HELIX 28 28 ASP B 205 ASN B 219 1 15 HELIX 29 29 ASP B 232 VAL B 239 1 8 HELIX 30 30 GLY B 289 GLU B 306 1 18 HELIX 31 31 ALA B 309 ASP B 319 1 11 HELIX 32 32 HIS B 349 TRP B 364 1 16 HELIX 33 33 ARG B 377 LEU B 384 1 8 HELIX 34 34 LEU B 384 SER B 393 1 10 HELIX 35 35 ASP B 415 GLY B 427 1 13 HELIX 36 36 ASP B 436 SER B 438 5 3 HELIX 37 37 GLN B 439 ILE B 448 1 10 HELIX 38 38 SER B 461 LYS B 474 1 14 SHEET 1 AA 5 LYS A 65 ILE A 68 0 SHEET 2 AA 5 GLN A 44 ASP A 49 1 O ILE A 45 N LYS A 65 SHEET 3 AA 5 GLN A 20 ILE A 24 1 O ILE A 21 N SER A 46 SHEET 4 AA 5 VAL A 80 VAL A 83 1 O VAL A 80 N HIS A 22 SHEET 5 AA 5 VAL A 104 GLN A 106 1 O ILE A 105 N VAL A 83 SHEET 1 AB10 ALA A 162 HIS A 163 0 SHEET 2 AB10 THR A 148 VAL A 150 -1 O PHE A 149 N HIS A 163 SHEET 3 AB10 TYR A 169 GLU A 173 1 O TYR A 169 N THR A 148 SHEET 4 AB10 HIS A 119 ALA A 124 1 O HIS A 119 N LEU A 170 SHEET 5 AB10 VAL A 188 VAL A 191 1 O VAL A 188 N ALA A 122 SHEET 6 AB10 LEU A 225 CYS A 229 1 O LEU A 225 N SER A 189 SHEET 7 AB10 GLN A 245 GLY A 250 1 O GLN A 245 N ALA A 226 SHEET 8 AB10 TYR A 257 THR A 265 1 O TYR A 257 N GLY A 250 SHEET 9 AB10 GLN A 268 ILE A 274 -1 O GLN A 268 N THR A 265 SHEET 10 AB10 ARG A 280 LEU A 285 -1 O ILE A 281 N VAL A 273 SHEET 1 AC 6 ASP A 328 ARG A 335 0 SHEET 2 AC 6 GLY A 338 ASP A 345 -1 O GLY A 338 N ARG A 335 SHEET 3 AC 6 LEU A 453 GLN A 457 1 O ILE A 454 N VAL A 343 SHEET 4 AC 6 ILE A 369 PHE A 373 1 O VAL A 370 N LEU A 455 SHEET 5 AC 6 ALA A 397 LEU A 401 1 O ALA A 397 N MET A 371 SHEET 6 AC 6 ILE A 432 VAL A 434 1 O ILE A 432 N MET A 400 SHEET 1 BA 5 LYS B 65 ILE B 68 0 SHEET 2 BA 5 GLN B 44 ASP B 49 1 O ILE B 45 N LYS B 65 SHEET 3 BA 5 GLN B 20 ILE B 24 1 O ILE B 21 N SER B 46 SHEET 4 BA 5 VAL B 80 VAL B 83 1 O VAL B 80 N HIS B 22 SHEET 5 BA 5 VAL B 104 GLN B 106 1 O ILE B 105 N VAL B 83 SHEET 1 BB10 ALA B 162 HIS B 163 0 SHEET 2 BB10 THR B 148 VAL B 150 -1 O PHE B 149 N HIS B 163 SHEET 3 BB10 TYR B 169 GLU B 173 1 O TYR B 169 N THR B 148 SHEET 4 BB10 HIS B 119 ALA B 124 1 O HIS B 119 N LEU B 170 SHEET 5 BB10 VAL B 188 VAL B 191 1 O VAL B 188 N ALA B 122 SHEET 6 BB10 LEU B 225 CYS B 229 1 O LEU B 225 N SER B 189 SHEET 7 BB10 GLN B 245 GLY B 250 1 O GLN B 245 N ALA B 226 SHEET 8 BB10 TYR B 257 THR B 265 1 O TYR B 257 N GLY B 250 SHEET 9 BB10 GLN B 268 ILE B 274 -1 O GLN B 268 N THR B 265 SHEET 10 BB10 ARG B 280 LEU B 285 -1 O ILE B 281 N VAL B 273 SHEET 1 BC 6 ASP B 328 ARG B 335 0 SHEET 2 BC 6 GLY B 338 ASP B 345 -1 O GLY B 338 N ARG B 335 SHEET 3 BC 6 LEU B 453 GLN B 457 1 O ILE B 454 N VAL B 343 SHEET 4 BC 6 ILE B 369 PHE B 373 1 O VAL B 370 N LEU B 455 SHEET 5 BC 6 ALA B 397 LEU B 401 1 O ALA B 397 N MET B 371 SHEET 6 BC 6 ILE B 432 VAL B 434 1 O ILE B 432 N MET B 400 LINK OG1 THR A 130 MG MG A1477 1555 1555 2.59 LINK OE1 GLU A 173 MG MG A1477 1555 1555 2.30 LINK O1G ACP A1476 MG MG A1477 1555 1555 2.33 LINK O1B ACP A1476 MG MG A1477 1555 1555 2.27 LINK MG MG A1477 O HOH A2125 1555 1555 2.55 LINK OG1 THR B 130 MG MG B1476 1555 1555 2.44 LINK OE1 GLU B 173 MG MG B1476 1555 1555 2.36 LINK O1B ACP B1475 MG MG B1476 1555 1555 2.26 LINK O2G ACP B1475 MG MG B1476 1555 1555 2.34 LINK MG MG B1476 O HOH B2195 1555 1555 2.26 SITE 1 AC1 4 THR A 130 GLU A 173 ACP A1476 HOH A2125 SITE 1 AC2 4 THR B 130 GLU B 173 ACP B1475 HOH B2195 SITE 1 AC3 24 THR A 126 HIS A 127 GLY A 128 LYS A 129 SITE 2 AC3 24 THR A 130 THR A 131 GLU A 173 ASN A 193 SITE 3 AC3 24 HIS A 291 ASN A 295 ARG A 326 ASP A 345 SITE 4 AC3 24 TYR A 346 GLY A 347 HIS A 348 GLU A 352 SITE 5 AC3 24 VAL A 355 THR A 356 MG A1477 HOH A2297 SITE 6 AC3 24 HOH A2410 HOH A2411 HOH A2412 HOH A2413 SITE 1 AC4 23 THR B 126 HIS B 127 GLY B 128 LYS B 129 SITE 2 AC4 23 THR B 130 THR B 131 GLU B 173 ASN B 193 SITE 3 AC4 23 HIS B 291 ASN B 295 ARG B 326 ASP B 345 SITE 4 AC4 23 TYR B 346 GLY B 347 HIS B 348 GLU B 352 SITE 5 AC4 23 THR B 356 MG B1476 HOH B2401 HOH B2407 SITE 6 AC4 23 HOH B2510 HOH B2511 HOH B2512 CRYST1 71.600 93.200 86.800 90.00 101.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013966 0.000000 0.002816 0.00000 SCALE2 0.000000 0.010730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011753 0.00000