HEADER ISOMERASE 10-DEC-01 1GR0 TITLE MYO-INOSITOL 1-PHOSPHATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS IN TITLE 2 COMPLEX WITH NAD AND ZINC. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-3-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPS, MYO-INOSITOL-1-PHOSPHATE SYNTHASE, MI-1-P SYNTHASE, MIP COMPND 5 SYNTHASE, HYPOTHETICAL 40.1 KDA PROTEIN RV0046C; COMPND 6 EC: 5.5.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS ISOMERASE, OXIDOREDUCTASE, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, TB, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR R.A.NORMAN,J.MURRAY-RUST,N.Q.MCDONALD,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 8 21-AUG-19 1GR0 1 REMARK REVDAT 7 21-DEC-16 1GR0 1 AUTHOR REVDAT 6 07-SEP-11 1GR0 1 HEADER COMPND KEYWDS REMARK REVDAT 6 2 1 HETSYN FORMUL VERSN REVDAT 5 24-FEB-09 1GR0 1 VERSN REVDAT 4 03-FEB-05 1GR0 1 KEYWDS REVDAT 3 24-JAN-05 1GR0 1 KEYWDS AUTHOR REMARK REVDAT 2 20-MAR-02 1GR0 1 REMARK HET HETNAM FORMUL REVDAT 2 2 1 LINK TER HETATM CONECT REVDAT 1 12-MAR-02 1GR0 0 JRNL AUTH R.A.NORMAN,M.S.B.MCALISTER,J.MURRAY-RUST,F.MOVAHEDZADEH, JRNL AUTH 2 N.G.STOKER,N.Q.MCDONALD JRNL TITL CRYSTAL STRUCTURE OF INOSITOL 1-PHOSPHATE SYNTHASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS, A KEY ENZYME IN JRNL TITL 3 PHOSPHATIDYLINOSITOL SYNTHESIS JRNL REF STRUCTURE V. 10 393 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12005437 JRNL DOI 10.1016/S0969-2126(02)00718-9 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3021712.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 28153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1389 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4115 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.00000 REMARK 3 B22 (A**2) : -8.00000 REMARK 3 B33 (A**2) : 16.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 46.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAD.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : CAC.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NAD.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : CAC.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SIDE CHAINS FOR THE FOLLOWING REMARK 3 RESIDUES WERE DISORDERED IN ELECTRON DENSITY: THR A 14, ARG A 60, REMARK 3 ASP A 268 REMARK 4 REMARK 4 1GR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1290009091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 24.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PARTIALLY REFINED MODEL OBTAINED FROM MAD PHASES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPTIMAL CRYSTALLISATION CONDITIONS: REMARK 280 PEG 4000 (6.2-6.7% W/V), SODIUM CACODYLATE (50MM, PH7.0), REMARK 280 CALCIUM ACETATE (100MM)., PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.09750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.09750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.09750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.09750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.09750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.09750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.09750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.09750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -243.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ENZYME INOSITOL-1-PHOSPHATE SYNTHASE IS PART OF THE REMARK 400 PHOSPHATIDYLINOSITOL BIOSYNTHESIS PATHWAY AND CATALYSES REMARK 400 THE CONVERSION OF INOSITOL-1-PHOSPHATE FROM GLUCOSE-6-PHOSPHATE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 HIS A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ARG A 242 REMARK 465 GLU A 243 REMARK 465 ARG A 244 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 SER A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 ILE A 250 REMARK 465 SER A 251 REMARK 465 LYS A 252 REMARK 465 THR A 253 REMARK 465 GLN A 254 REMARK 465 ALA A 255 REMARK 465 VAL A 256 REMARK 465 THR A 257 REMARK 465 SER A 258 REMARK 465 ASN A 259 REMARK 465 LEU A 260 REMARK 465 LYS A 261 REMARK 465 ARG A 262 REMARK 465 GLU A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 THR A 266 REMARK 465 LYS A 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 14 OG1 CG2 REMARK 470 ARG A 60 NE CZ NH1 NH2 REMARK 470 ASP A 268 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 195 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 -126.83 54.10 REMARK 500 ASN A 89 28.79 -156.48 REMARK 500 LEU A 109 -125.95 49.09 REMARK 500 ILE A 176 -64.26 -132.59 REMARK 500 ASP A 196 87.86 84.86 REMARK 500 ASP A 197 95.07 73.00 REMARK 500 GLN A 201 -70.36 -66.61 REMARK 500 ASP A 281 -132.76 58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2170 O REMARK 620 2 SER A 311 OG 121.0 REMARK 620 3 NAD A1000 N7N 96.0 101.0 REMARK 620 4 NAD A1000 O2N 98.4 108.2 133.9 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0046C RELATED DB: TARGETDB DBREF 1GR0 A 1 367 UNP P71703 Y046_MYCTU 1 367 SEQRES 1 A 367 MET SER GLU HIS GLN SER LEU PRO ALA PRO GLU ALA SER SEQRES 2 A 367 THR GLU VAL ARG VAL ALA ILE VAL GLY VAL GLY ASN CYS SEQRES 3 A 367 ALA SER SER LEU VAL GLN GLY VAL GLU TYR TYR TYR ASN SEQRES 4 A 367 ALA ASP ASP THR SER THR VAL PRO GLY LEU MET HIS VAL SEQRES 5 A 367 ARG PHE GLY PRO TYR HIS VAL ARG ASP VAL LYS PHE VAL SEQRES 6 A 367 ALA ALA PHE ASP VAL ASP ALA LYS LYS VAL GLY PHE ASP SEQRES 7 A 367 LEU SER ASP ALA ILE PHE ALA SER GLU ASN ASN THR ILE SEQRES 8 A 367 LYS ILE ALA ASP VAL ALA PRO THR ASN VAL ILE VAL GLN SEQRES 9 A 367 ARG GLY PRO THR LEU ASP GLY ILE GLY LYS TYR TYR ALA SEQRES 10 A 367 ASP THR ILE GLU LEU SER ASP ALA GLU PRO VAL ASP VAL SEQRES 11 A 367 VAL GLN ALA LEU LYS GLU ALA LYS VAL ASP VAL LEU VAL SEQRES 12 A 367 SER TYR LEU PRO VAL GLY SER GLU GLU ALA ASP LYS PHE SEQRES 13 A 367 TYR ALA GLN CYS ALA ILE ASP ALA GLY VAL ALA PHE VAL SEQRES 14 A 367 ASN ALA LEU PRO VAL PHE ILE ALA SER ASP PRO VAL TRP SEQRES 15 A 367 ALA LYS LYS PHE THR ASP ALA ARG VAL PRO ILE VAL GLY SEQRES 16 A 367 ASP ASP ILE LYS SER GLN VAL GLY ALA THR ILE THR HIS SEQRES 17 A 367 ARG VAL LEU ALA LYS LEU PHE GLU ASP ARG GLY VAL GLN SEQRES 18 A 367 LEU ASP ARG THR MET GLN LEU ASN VAL GLY GLY ASN MET SEQRES 19 A 367 ASP PHE LEU ASN MET LEU GLU ARG GLU ARG LEU GLU SER SEQRES 20 A 367 LYS LYS ILE SER LYS THR GLN ALA VAL THR SER ASN LEU SEQRES 21 A 367 LYS ARG GLU PHE LYS THR LYS ASP VAL HIS ILE GLY PRO SEQRES 22 A 367 SER ASP HIS VAL GLY TRP LEU ASP ASP ARG LYS TRP ALA SEQRES 23 A 367 TYR VAL ARG LEU GLU GLY ARG ALA PHE GLY ASP VAL PRO SEQRES 24 A 367 LEU ASN LEU GLU TYR LYS LEU GLU VAL TRP ASP SER PRO SEQRES 25 A 367 ASN SER ALA GLY VAL ILE ILE ASP ALA VAL ARG ALA ALA SEQRES 26 A 367 LYS ILE ALA LYS ASP ARG GLY ILE GLY GLY PRO VAL ILE SEQRES 27 A 367 PRO ALA SER ALA TYR LEU MET LYS SER PRO PRO GLU GLN SEQRES 28 A 367 LEU PRO ASP ASP ILE ALA ARG ALA GLN LEU GLU GLU PHE SEQRES 29 A 367 ILE ILE GLY HET NAD A1000 44 HET ZN A1200 1 HET CAC A1500 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 ZN ZN 2+ FORMUL 4 CAC C2 H6 AS O2 1- FORMUL 5 HOH *170(H2 O) HELIX 1 1 GLY A 24 TYR A 37 1 14 HELIX 2 2 ASP A 78 ILE A 83 1 6 HELIX 3 3 GLY A 113 ASP A 118 1 6 HELIX 4 4 ASP A 129 ALA A 137 1 9 HELIX 5 5 SER A 150 GLY A 165 1 16 HELIX 6 6 ASP A 179 ARG A 190 1 12 HELIX 7 7 GLY A 203 ARG A 218 1 16 HELIX 8 8 ASN A 233 GLU A 241 1 9 HELIX 9 11 SER A 311 ARG A 331 1 21 HELIX 10 12 VAL A 337 MET A 345 1 9 HELIX 11 13 PRO A 353 GLY A 367 1 15 SHEET 1 AA 7 GLN A 104 ARG A 105 0 SHEET 2 AA 7 VAL A 62 ASP A 69 1 O ALA A 67 N GLN A 104 SHEET 3 AA 7 VAL A 16 VAL A 21 1 O VAL A 16 N LYS A 63 SHEET 4 AA 7 VAL A 141 SER A 144 1 O VAL A 141 N ALA A 19 SHEET 5 AA 7 ALA A 167 ASN A 170 1 O ALA A 167 N LEU A 142 SHEET 6 AA 7 PRO A 192 GLY A 195 1 O PRO A 192 N PHE A 168 SHEET 7 AA 7 GLY A 335 PRO A 336 1 O GLY A 335 N ILE A 193 SHEET 1 AB 2 ARG A 53 PHE A 54 0 SHEET 2 AB 2 TYR A 57 HIS A 58 -1 O TYR A 57 N PHE A 54 SHEET 1 AC 4 VAL A 269 HIS A 270 0 SHEET 2 AC 4 GLN A 221 GLY A 231 1 O THR A 225 N HIS A 270 SHEET 3 AC 4 ARG A 283 ALA A 294 -1 O TRP A 285 N VAL A 230 SHEET 4 AC 4 VAL A 298 TRP A 309 -1 O VAL A 298 N ALA A 294 SHEET 1 AD 3 VAL A 269 HIS A 270 0 SHEET 2 AD 3 GLN A 221 GLY A 231 1 O THR A 225 N HIS A 270 SHEET 3 AD 3 PRO A 273 HIS A 276 1 N SER A 274 O ASN A 229 LINK ZN ZN A1200 O HOH A2170 1555 1555 2.21 LINK ZN ZN A1200 OG SER A 311 1555 1555 2.42 LINK ZN ZN A1200 N7N NAD A1000 1555 1555 2.08 LINK ZN ZN A1200 O2N NAD A1000 1555 1555 2.16 SITE 1 AC1 4 CYS A 26 SER A 311 NAD A1000 HOH A2170 SITE 1 AC2 5 THR A 43 SER A 44 HIS A 51 HOH A2015 SITE 2 AC2 5 HOH A2019 SITE 1 AC3 34 GLY A 22 VAL A 23 GLY A 24 ASN A 25 SITE 2 AC3 34 CYS A 26 PHE A 68 ASP A 69 VAL A 70 SITE 3 AC3 34 LYS A 74 PRO A 107 THR A 108 GLY A 111 SITE 4 AC3 34 ILE A 112 TYR A 116 TYR A 145 LEU A 146 SITE 5 AC3 34 PRO A 147 VAL A 148 TYR A 157 ALA A 171 SITE 6 AC3 34 LEU A 172 ASP A 197 ILE A 198 MET A 234 SITE 7 AC3 34 ASP A 235 ASP A 310 SER A 311 SER A 314 SITE 8 AC3 34 ZN A1200 HOH A2001 HOH A2002 HOH A2035 SITE 9 AC3 34 HOH A2168 HOH A2169 CRYST1 116.195 116.195 64.544 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015493 0.00000