HEADER CYTOSKETAL PROTEIN 18-DEC-01 1GRW TITLE C. ELEGANS MAJOR SPERM PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR SPERM PROTEIN 31/40/142; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MSP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: C.ELEGANS; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 CELL: SPERM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS CYTOSKETAL PROTEIN, CYTOSKELETON, SPERM, CELL MOTILITY EXPDTA X-RAY DIFFRACTION AUTHOR A.M.E.BAKER,T.M.ROBERTS,M.STEWART REVDAT 6 13-DEC-23 1GRW 1 REMARK REVDAT 5 08-MAY-19 1GRW 1 REMARK REVDAT 4 06-MAR-19 1GRW 1 REMARK REVDAT 3 02-MAY-18 1GRW 1 REMARK REVDAT 2 24-FEB-09 1GRW 1 VERSN REVDAT 1 13-JUN-02 1GRW 0 JRNL AUTH A.M.E.BAKER,T.M.ROBERTS,M.STEWART JRNL TITL 2.6 A RESOLUTION CRYSTAL STRUCTURE OF HELICES OF THE MOTILE JRNL TITL 2 MAJOR SPERM PROTEIN (MSP) OF CAENORHABDITIS ELEGANS JRNL REF J.MOL.BIOL. V. 319 491 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12051923 JRNL DOI 10.1016/S0022-2836(02)00294-2 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 4.0.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.507 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.380 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NONE REMARK 4 REMARK 4 1GRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1290008822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9311 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 37.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.660 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3039 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2MSP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION AT 20DEGC IN 16% PEG REMARK 280 8000, 100 MM NA ACETATE BUFFER PH5.0, PH 5.00, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 228.60150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.73900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.73900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.30075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.73900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.73900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 342.90225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.73900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.73900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.30075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.73900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.73900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 342.90225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 228.60150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PROTEIN IS AN IMPORTANT COMPONENT IN THE MOLECULAR INTERACTIONS REMARK 400 THAT UNDERLIE SPERM CRAWLING. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 ALA C 1 REMARK 465 GLN C 2 REMARK 465 ALA D 1 REMARK 465 GLN D 2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 3 REMARK 475 SER B 3 REMARK 475 SER C 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 39 NH1 NH2 REMARK 480 LYS A 51 CG CD CE NZ REMARK 480 LYS A 65 CD CE NZ REMARK 480 ASP A 83 CG OD1 OD2 REMARK 480 ARG A 88 CZ NH1 NH2 REMARK 480 GLN A 103 CD OE1 NE2 REMARK 480 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 26 CG CD CE NZ REMARK 480 ARG B 39 NE CZ NH1 NH2 REMARK 480 LYS B 51 CG CD CE NZ REMARK 480 LYS B 65 CG CD CE NZ REMARK 480 ASP B 75 CG OD1 OD2 REMARK 480 GLN B 81 CG CD OE1 NE2 REMARK 480 GLU B 92 CD OE1 OE2 REMARK 480 GLN B 103 CG CD OE1 NE2 REMARK 480 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 107 CG CD OE1 OE2 REMARK 480 GLN B 110 CG CD OE1 NE2 REMARK 480 GLN C 10 CD OE1 NE2 REMARK 480 ARG C 39 CD NE CZ NH1 NH2 REMARK 480 LYS C 46 CG CD CE NZ REMARK 480 MET C 50 CG SD CE REMARK 480 LYS C 65 CE NZ REMARK 480 ASP C 83 CG OD1 OD2 REMARK 480 ASN C 86 CG OD1 ND2 REMARK 480 ARG C 106 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 26 CE NZ REMARK 480 LYS D 46 NZ REMARK 480 LYS D 51 CG CD CE NZ REMARK 480 GLN D 81 CG CD OE1 NE2 REMARK 480 GLU D 82 CG CD OE1 OE2 REMARK 480 ASP D 83 CG OD1 OD2 REMARK 480 ASN D 86 CG OD1 ND2 REMARK 480 ARG D 105 CZ NH1 NH2 REMARK 480 ARG D 106 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 107 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 3 N VAL B 4 1.77 REMARK 500 NE ARG B 105 NE1 TRP B 108 1.88 REMARK 500 O LYS A 26 O HOH A 2006 1.94 REMARK 500 NH2 ARG B 105 CB GLU B 107 2.02 REMARK 500 CD ARG B 105 NE1 TRP B 108 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 83 OD2 ASP D 98 7545 1.53 REMARK 500 OD1 ASP A 83 OD1 ASP D 98 7545 2.01 REMARK 500 CG ASP A 83 OD2 ASP D 98 7545 2.04 REMARK 500 OD1 ASP A 83 OD2 ASP D 98 7545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 3 CA SER A 3 C 0.215 REMARK 500 ARG A 39 CZ ARG A 39 NH1 0.169 REMARK 500 ARG A 39 CZ ARG A 39 NH2 -0.116 REMARK 500 ASP A 83 CB ASP A 83 CG 0.138 REMARK 500 ARG A 88 NE ARG A 88 CZ -0.113 REMARK 500 SER B 3 C VAL B 4 N -0.144 REMARK 500 ARG B 39 CD ARG B 39 NE -0.245 REMARK 500 LYS B 51 CB LYS B 51 CG 0.225 REMARK 500 ASP B 75 CB ASP B 75 CG -0.127 REMARK 500 GLN B 81 CB GLN B 81 CG -0.168 REMARK 500 GLU B 92 CG GLU B 92 CD -0.279 REMARK 500 GLU B 107 CB GLU B 107 CG -0.159 REMARK 500 PRO B 126 CD PRO B 126 N 0.101 REMARK 500 ARG C 39 CG ARG C 39 CD -0.346 REMARK 500 LYS C 46 CB LYS C 46 CG 0.197 REMARK 500 LYS C 65 CD LYS C 65 CE 0.161 REMARK 500 ASP C 83 CB ASP C 83 CG -0.190 REMARK 500 ARG C 117 CB ARG C 117 CG -0.450 REMARK 500 LYS D 51 CB LYS D 51 CG 0.225 REMARK 500 GLU D 82 CB GLU D 82 CG 0.455 REMARK 500 ARG D 105 NE ARG D 105 CZ -0.189 REMARK 500 ARG D 106 CB ARG D 106 CG -0.255 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 7 CA - C - O ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 8 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 24 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LYS A 51 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 88 CD - NE - CZ ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 106 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 117 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLU A 123 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 SER B 3 CA - C - N ANGL. DEV. = 27.6 DEGREES REMARK 500 SER B 3 O - C - N ANGL. DEV. = -29.7 DEGREES REMARK 500 VAL B 4 C - N - CA ANGL. DEV. = 46.1 DEGREES REMARK 500 ASP B 8 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG B 39 CG - CD - NE ANGL. DEV. = 20.5 DEGREES REMARK 500 ASP B 75 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 92 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG B 105 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 SER C 3 CA - C - N ANGL. DEV. = -19.6 DEGREES REMARK 500 SER C 3 O - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 VAL C 4 C - N - CA ANGL. DEV. = -34.9 DEGREES REMARK 500 ARG C 39 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 52 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP C 75 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG C 88 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG C 88 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 106 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 116 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 116 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG C 117 CA - CB - CG ANGL. DEV. = 35.4 DEGREES REMARK 500 ARG C 117 CB - CG - CD ANGL. DEV. = 20.9 DEGREES REMARK 500 VAL D 4 N - CA - CB ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP D 8 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP D 8 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG D 39 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG D 40 NH1 - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 60 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 127.63 -37.01 REMARK 500 VAL B 4 146.27 162.45 REMARK 500 LYS B 65 -2.95 72.85 REMARK 500 ALA B 100 172.65 47.12 REMARK 500 LYS B 102 49.60 -93.93 REMARK 500 ALA C 100 135.72 -14.93 REMARK 500 LYS C 102 59.02 -98.60 REMARK 500 VAL D 4 78.69 75.02 REMARK 500 GLN D 81 21.36 -69.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 2008 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 1GRW A 1 126 UNP P53017 MS31_CAEEL 1 126 DBREF 1GRW B 1 126 UNP P53017 MS31_CAEEL 1 126 DBREF 1GRW C 1 126 UNP P53017 MS31_CAEEL 1 126 DBREF 1GRW D 1 126 UNP P53017 MS31_CAEEL 1 126 SEQRES 1 A 126 ALA GLN SER VAL PRO PRO GLY ASP ILE GLN THR GLN PRO SEQRES 2 A 126 GLY THR LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 A 126 HIS THR TYR HIS ILE LYS VAL ILE ASN SER SER ALA ARG SEQRES 4 A 126 ARG ILE GLY TYR GLY ILE LYS THR THR ASN MET LYS ARG SEQRES 5 A 126 LEU GLY VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 A 126 GLU ALA VAL LEU LEU ALA VAL SER CYS ASP ALA PHE ALA SEQRES 7 A 126 PHE GLY GLN GLU ASP THR ASN ASN ASP ARG ILE THR VAL SEQRES 8 A 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 A 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 A 126 LYS ASN LEU PRO ILE GLU TYR ASN PRO SEQRES 1 B 126 ALA GLN SER VAL PRO PRO GLY ASP ILE GLN THR GLN PRO SEQRES 2 B 126 GLY THR LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 B 126 HIS THR TYR HIS ILE LYS VAL ILE ASN SER SER ALA ARG SEQRES 4 B 126 ARG ILE GLY TYR GLY ILE LYS THR THR ASN MET LYS ARG SEQRES 5 B 126 LEU GLY VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 B 126 GLU ALA VAL LEU LEU ALA VAL SER CYS ASP ALA PHE ALA SEQRES 7 B 126 PHE GLY GLN GLU ASP THR ASN ASN ASP ARG ILE THR VAL SEQRES 8 B 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 B 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 B 126 LYS ASN LEU PRO ILE GLU TYR ASN PRO SEQRES 1 C 126 ALA GLN SER VAL PRO PRO GLY ASP ILE GLN THR GLN PRO SEQRES 2 C 126 GLY THR LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 C 126 HIS THR TYR HIS ILE LYS VAL ILE ASN SER SER ALA ARG SEQRES 4 C 126 ARG ILE GLY TYR GLY ILE LYS THR THR ASN MET LYS ARG SEQRES 5 C 126 LEU GLY VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 C 126 GLU ALA VAL LEU LEU ALA VAL SER CYS ASP ALA PHE ALA SEQRES 7 C 126 PHE GLY GLN GLU ASP THR ASN ASN ASP ARG ILE THR VAL SEQRES 8 C 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 C 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 C 126 LYS ASN LEU PRO ILE GLU TYR ASN PRO SEQRES 1 D 126 ALA GLN SER VAL PRO PRO GLY ASP ILE GLN THR GLN PRO SEQRES 2 D 126 GLY THR LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 D 126 HIS THR TYR HIS ILE LYS VAL ILE ASN SER SER ALA ARG SEQRES 4 D 126 ARG ILE GLY TYR GLY ILE LYS THR THR ASN MET LYS ARG SEQRES 5 D 126 LEU GLY VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 D 126 GLU ALA VAL LEU LEU ALA VAL SER CYS ASP ALA PHE ALA SEQRES 7 D 126 PHE GLY GLN GLU ASP THR ASN ASN ASP ARG ILE THR VAL SEQRES 8 D 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 D 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 D 126 LYS ASN LEU PRO ILE GLU TYR ASN PRO FORMUL 5 HOH *74(H2 O) HELIX 1 1 ALA A 78 GLU A 82 5 5 HELIX 2 2 ARG A 105 GLN A 110 5 6 HELIX 3 3 ARG B 106 GLY B 111 1 6 HELIX 4 4 ARG C 105 GLN C 110 5 6 HELIX 5 5 ARG D 105 GLN D 110 5 6 SHEET 1 AA 4 ILE A 9 GLN A 12 0 SHEET 2 AA 4 HIS A 27 ASN A 35 -1 O LYS A 32 N GLN A 12 SHEET 3 AA 4 ALA A 67 CYS A 74 -1 O VAL A 68 N VAL A 33 SHEET 4 AA 4 LEU A 53 ASP A 56 -1 O GLY A 54 N SER A 73 SHEET 1 AB 5 ILE A 17 ASN A 20 0 SHEET 2 AB 5 ARG A 116 ASN A 125 1 O PRO A 121 N ILE A 17 SHEET 3 AB 5 ARG A 88 ASN A 95 -1 O ILE A 89 N LEU A 120 SHEET 4 AB 5 ILE A 41 THR A 47 -1 O GLY A 42 N THR A 94 SHEET 5 AB 5 CYS A 59 LEU A 62 -1 O GLY A 60 N TYR A 43 SHEET 1 BA 4 ILE B 9 GLN B 12 0 SHEET 2 BA 4 HIS B 27 ASN B 35 -1 O LYS B 32 N GLN B 12 SHEET 3 BA 4 ALA B 67 CYS B 74 -1 O VAL B 68 N VAL B 33 SHEET 4 BA 4 LEU B 53 ASP B 56 -1 O GLY B 54 N SER B 73 SHEET 1 BB 5 ILE B 17 ASN B 20 0 SHEET 2 BB 5 GLY B 113 ASN B 125 1 O PRO B 121 N ILE B 17 SHEET 3 BB 5 ARG B 88 ASN B 95 -1 O ILE B 89 N LEU B 120 SHEET 4 BB 5 ILE B 41 THR B 47 -1 O GLY B 42 N THR B 94 SHEET 5 BB 5 CYS B 59 LEU B 62 -1 O GLY B 60 N TYR B 43 SHEET 1 BC 3 ILE B 17 ASN B 20 0 SHEET 2 BC 3 GLY B 113 ASN B 125 1 O PRO B 121 N ILE B 17 SHEET 3 BC 3 GLY C 113 ASN C 125 -1 O GLY C 113 N ARG B 117 SHEET 1 CA 4 GLN C 10 GLN C 12 0 SHEET 2 CA 4 HIS C 27 ILE C 34 -1 O LYS C 32 N GLN C 12 SHEET 3 CA 4 ALA C 67 CYS C 74 -1 O VAL C 68 N VAL C 33 SHEET 4 CA 4 LEU C 53 ASP C 56 -1 O GLY C 54 N SER C 73 SHEET 1 DA 4 ILE D 9 GLN D 12 0 SHEET 2 DA 4 HIS D 27 ASN D 35 -1 O LYS D 32 N GLN D 12 SHEET 3 DA 4 ALA D 67 CYS D 74 -1 O VAL D 68 N VAL D 33 SHEET 4 DA 4 LEU D 53 ASP D 56 -1 O GLY D 54 N SER D 73 SHEET 1 DB 5 ILE D 17 ASN D 20 0 SHEET 2 DB 5 ARG D 116 ASN D 125 1 O PRO D 121 N ILE D 17 SHEET 3 DB 5 ARG D 88 ASN D 95 -1 O ILE D 89 N LEU D 120 SHEET 4 DB 5 ILE D 41 THR D 47 -1 O GLY D 42 N THR D 94 SHEET 5 DB 5 CYS D 59 LEU D 62 -1 O GLY D 60 N TYR D 43 CISPEP 1 GLN A 12 PRO A 13 0 1.38 CISPEP 2 ALA A 21 PRO A 22 0 -1.95 CISPEP 3 ASP A 56 PRO A 57 0 -1.68 CISPEP 4 GLN B 12 PRO B 13 0 -0.08 CISPEP 5 ALA B 21 PRO B 22 0 -0.39 CISPEP 6 ASP B 56 PRO B 57 0 1.54 CISPEP 7 GLN C 12 PRO C 13 0 -0.47 CISPEP 8 ALA C 21 PRO C 22 0 2.80 CISPEP 9 ASP C 56 PRO C 57 0 -1.89 CISPEP 10 GLN D 12 PRO D 13 0 1.09 CISPEP 11 ALA D 21 PRO D 22 0 -0.80 CISPEP 12 ASP D 56 PRO D 57 0 2.27 CRYST1 53.478 53.478 457.203 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002187 0.00000 MTRIX1 1 0.988600 0.021710 0.148980 -6.30903 1 MTRIX2 1 0.016840 -0.999290 0.033850 7.36528 1 MTRIX3 1 0.149600 -0.030950 -0.988260 79.84435 1 MTRIX1 2 -0.700310 -0.701010 -0.134750 55.71134 1 MTRIX2 2 0.704970 -0.708840 0.023810 -10.54607 1 MTRIX3 2 -0.112210 -0.078320 0.990590 -53.62370 1 MTRIX1 3 -0.697880 0.715970 0.018800 42.52015 1 MTRIX2 3 0.716060 0.696920 0.039620 -18.15461 1 MTRIX3 3 0.015260 0.041110 -0.999040 26.02107 1