HEADER TRANSFERASE 18-DEC-01 1GRY OBSLTE 05-JUL-02 1GRY 1GZU TITLE CRYSTAL STRUCTURE OF HUMAN NICOTINAMIDE MONONUCLEOTIDE TITLE 2 ADENYLYLTRANSFERASE IN COMPLEX WITH NMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NMN ADENYLYLTRANSFERASE; COMPND 5 EC: 2.7.7.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: NM522; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS NAD BIOSYNTHESIS, ADENYLYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.WERNER,M.ZIEGLER,F.LERNER,M.SCHWEIGER,U.HEINEMANN REVDAT 2 05-JUL-02 1GRY 1 OBSLTE REVDAT 1 23-MAY-02 1GRY 0 JRNL AUTH E.WERNER,M.ZIEGLER,F.LERNER,M.SCHWEIGER,U.HEINEMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN NICOTINAMIDE JRNL TITL 2 MONONUCLEOTIDE IN COMPLEX WITH NMN JRNL REF TO BE PUBLISHED FEBS LETT. V. 516 239 2002 JRNL REFN ASTM FEBLAL NE ISSN 0014-5793 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 27097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 5478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.793 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.405 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.841 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5555 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 7530 ; 1.719 ; 1.959 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 858 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4070 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3144 ; 0.356 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 400 ; 0.223 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.256 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.015 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3341 ; 1.842 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5403 ; 4.018 ; 8.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2214 ; 4.725 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2127 ; 7.825 ;12.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 270 3 REMARK 3 1 B 6 B 270 3 REMARK 3 1 C 6 C 270 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GRY COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.102 (2007-05-31) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI. REMARK 100 THE EBI ID CODE IS EBI-9156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-2001 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14 BEAMLINE ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 10.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -X,Y,1/2-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 117.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 117.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 70.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 117.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 70.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 117.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 3 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 106 REMARK 465 GLU A 107 REMARK 465 ALA A 108 REMARK 465 SER A 109 REMARK 465 ASP A 110 REMARK 465 CYS A 111 REMARK 465 ASP A 112 REMARK 465 HIS A 113 REMARK 465 GLN A 114 REMARK 465 GLN A 115 REMARK 465 ASN A 116 REMARK 465 SER A 117 REMARK 465 PRO A 118 REMARK 465 THR A 119 REMARK 465 LEU A 120 REMARK 465 GLU A 121 REMARK 465 ARG A 122 REMARK 465 PRO A 123 REMARK 465 GLY A 124 REMARK 465 ARG A 125 REMARK 465 LYS A 126 REMARK 465 ARG A 127 REMARK 465 LYS A 128 REMARK 465 TRP A 129 REMARK 465 THR A 130 REMARK 465 GLU A 131 REMARK 465 THR A 132 REMARK 465 GLN A 133 REMARK 465 ASP A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 GLN A 137 REMARK 465 LYS A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 LEU A 141 REMARK 465 GLU A 142 REMARK 465 PRO A 143 REMARK 465 LYS A 144 REMARK 465 THR A 145 REMARK 465 LYS A 146 REMARK 465 GLN A 271 REMARK 465 ARG A 272 REMARK 465 ASN A 273 REMARK 465 THR A 274 REMARK 465 ALA A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 LYS A 278 REMARK 465 THR A 279 REMARK 465 MSE B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 LEU B 106 REMARK 465 GLU B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 ASP B 110 REMARK 465 CYS B 111 REMARK 465 ASP B 112 REMARK 465 HIS B 113 REMARK 465 GLN B 114 REMARK 465 GLN B 115 REMARK 465 ASN B 116 REMARK 465 SER B 117 REMARK 465 PRO B 118 REMARK 465 THR B 119 REMARK 465 LEU B 120 REMARK 465 GLU B 121 REMARK 465 ARG B 122 REMARK 465 PRO B 123 REMARK 465 GLY B 124 REMARK 465 ARG B 125 REMARK 465 LYS B 126 REMARK 465 ARG B 127 REMARK 465 LYS B 128 REMARK 465 TRP B 129 REMARK 465 THR B 130 REMARK 465 GLU B 131 REMARK 465 THR B 132 REMARK 465 GLN B 133 REMARK 465 ASP B 134 REMARK 465 SER B 135 REMARK 465 SER B 136 REMARK 465 GLN B 137 REMARK 465 LYS B 138 REMARK 465 LYS B 139 REMARK 465 SER B 140 REMARK 465 LEU B 141 REMARK 465 GLU B 142 REMARK 465 PRO B 143 REMARK 465 LYS B 144 REMARK 465 THR B 145 REMARK 465 LYS B 146 REMARK 465 GLN B 271 REMARK 465 ARG B 272 REMARK 465 ASN B 273 REMARK 465 THR B 274 REMARK 465 ALA B 275 REMARK 465 GLU B 276 REMARK 465 ALA B 277 REMARK 465 LYS B 278 REMARK 465 THR B 279 REMARK 465 MSE C -10 REMARK 465 ARG C -9 REMARK 465 GLY C -8 REMARK 465 SER C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 GLU C 2 REMARK 465 ASN C 3 REMARK 465 SER C 4 REMARK 465 GLU C 5 REMARK 465 LEU C 106 REMARK 465 GLU C 107 REMARK 465 ALA C 108 REMARK 465 SER C 109 REMARK 465 ASP C 110 REMARK 465 CYS C 111 REMARK 465 ASP C 112 REMARK 465 HIS C 113 REMARK 465 GLN C 114 REMARK 465 GLN C 115 REMARK 465 ASN C 116 REMARK 465 SER C 117 REMARK 465 PRO C 118 REMARK 465 THR C 119 REMARK 465 LEU C 120 REMARK 465 GLU C 121 REMARK 465 ARG C 122 REMARK 465 PRO C 123 REMARK 465 GLY C 124 REMARK 465 ARG C 125 REMARK 465 LYS C 126 REMARK 465 ARG C 127 REMARK 465 LYS C 128 REMARK 465 TRP C 129 REMARK 465 THR C 130 REMARK 465 GLU C 131 REMARK 465 THR C 132 REMARK 465 GLN C 133 REMARK 465 ASP C 134 REMARK 465 SER C 135 REMARK 465 SER C 136 REMARK 465 GLN C 137 REMARK 465 LYS C 138 REMARK 465 LYS C 139 REMARK 465 SER C 140 REMARK 465 LEU C 141 REMARK 465 GLU C 142 REMARK 465 PRO C 143 REMARK 465 LYS C 144 REMARK 465 THR C 145 REMARK 465 LYS C 146 REMARK 465 GLN C 271 REMARK 465 ARG C 272 REMARK 465 ASN C 273 REMARK 465 THR C 274 REMARK 465 ALA C 275 REMARK 465 GLU C 276 REMARK 465 ALA C 277 REMARK 465 LYS C 278 REMARK 465 THR C 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O SER C 235 N ARG C 237 1.79 REMARK 500 O ASP C 53 N TYR C 55 1.90 REMARK 500 O SER A 235 N ARG A 237 1.92 REMARK 500 OE1 GLU A 94 C2 NMN A 501 1.94 REMARK 500 OE1 GLU B 94 O7 NMN B 501 1.97 REMARK 500 OE2 GLU B 94 C2 NMN B 501 1.97 REMARK 500 O PRO A 50 OE2 GLU A 86 2.05 REMARK 500 O SER B 235 N ARG B 237 2.09 REMARK 500 O ILE B 177 O TYR B 181 2.12 REMARK 500 O LYS A 90 CD1 TRP A 92 2.15 REMARK 500 O ILE A 177 O TYR A 181 2.18 REMARK 500 N SER C 16 O3P NMN C 501 2.18 REMARK 500 O VAL C 51 NH1 ARG C 66 2.19 REMARK 500 CG GLU C 91 CD1 LEU C 267 2.19 REMARK 500 O LYS C 170 N ASP C 173 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 78 CG LYS C 78 CD 0.702 REMARK 500 TRP C 92 CB TRP C 92 CG 0.211 REMARK 500 LYS C 170 CB LYS C 170 CG -0.142 REMARK 500 ASP C 220 CB ASP C 220 CG -0.182 REMARK 500 LEU C 267 CB LEU C 267 CG 0.381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 18 N - CA - C ANGL. DEV. =-13.6 DEGREES REMARK 500 SER A 235 N - CA - C ANGL. DEV. = 11.3 DEGREES REMARK 500 ASN B 18 N - CA - C ANGL. DEV. =-13.6 DEGREES REMARK 500 ASN C 18 N - CA - C ANGL. DEV. =-13.7 DEGREES REMARK 500 LEU C 72 CA - CB - CG ANGL. DEV. =-12.9 DEGREES REMARK 500 LYS C 78 CB - CG - CD ANGL. DEV. =-47.5 DEGREES REMARK 500 LYS C 170 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP C 220 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU C 267 CA - CB - CG ANGL. DEV. =-22.2 DEGREES REMARK 500 LEU C 267 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 256 -23.34 141.54 REMARK 500 VAL A 265 120.96 56.71 REMARK 500 HIS B 251 14.42 138.33 REMARK 500 VAL C 265 127.81 82.85 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: NMA REMARK 800 SITE_DESCRIPTION: NMN BINDING SITE FOR CHAIN C DBREF 1GRY A -10 1 PDB 1GRY 1GRY -10 1 DBREF 1GRY A 2 279 UNP Q9HAN9 Q9HAN9 2 279 DBREF 1GRY B -10 1 PDB 1GRY 1GRY -10 1 DBREF 1GRY B 2 279 UNP Q9HAN9 Q9HAN9 2 279 DBREF 1GRY C -10 1 PDB 1GRY 1GRY -10 1 DBREF 1GRY C 2 279 UNP Q9HAN9 Q9HAN9 2 279 SEQRES 1 A 290 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 A 290 ASN SER GLU LYS THR GLU VAL VAL LEU LEU ALA CYS GLY SEQRES 3 A 290 SER PHE ASN PRO ILE THR ASN MSE HIS LEU ARG LEU PHE SEQRES 4 A 290 GLU LEU ALA LYS ASP TYR MSE ASN GLY THR GLY ARG TYR SEQRES 5 A 290 THR VAL VAL LYS GLY ILE ILE SER PRO VAL GLY ASP ALA SEQRES 6 A 290 TYR LYS LYS LYS GLY LEU ILE PRO ALA TYR HIS ARG VAL SEQRES 7 A 290 ILE MSE ALA GLU LEU ALA THR LYS ASN SER LYS TRP VAL SEQRES 8 A 290 GLU VAL ASP THR TRP GLU SER LEU GLN LYS GLU TRP LYS SEQRES 9 A 290 GLU THR LEU LYS VAL LEU ARG HIS HIS GLN GLU LYS LEU SEQRES 10 A 290 GLU ALA SER ASP CYS ASP HIS GLN GLN ASN SER PRO THR SEQRES 11 A 290 LEU GLU ARG PRO GLY ARG LYS ARG LYS TRP THR GLU THR SEQRES 12 A 290 GLN ASP SER SER GLN LYS LYS SER LEU GLU PRO LYS THR SEQRES 13 A 290 LYS ALA VAL PRO LYS VAL LYS LEU LEU CYS GLY ALA ASP SEQRES 14 A 290 LEU LEU GLU SER PHE ALA VAL PRO ASN LEU TRP LYS SER SEQRES 15 A 290 GLU ASP ILE THR GLN ILE VAL ALA ASN TYR GLY LEU ILE SEQRES 16 A 290 CYS VAL THR ARG ALA GLY ASN ASP ALA GLN LYS PHE ILE SEQRES 17 A 290 TYR GLU SER ASP VAL LEU TRP LYS HIS ARG SER ASN ILE SEQRES 18 A 290 HIS VAL VAL ASN GLU TRP ILE ALA ASN ASP ILE SER SER SEQRES 19 A 290 THR LYS ILE ARG ARG ALA LEU ARG ARG GLY GLN SER ILE SEQRES 20 A 290 ARG TYR LEU VAL PRO ASP LEU VAL GLN GLU TYR ILE GLU SEQRES 21 A 290 LYS HIS ASN LEU TYR SER SER GLU SER GLU ASP ARG ASN SEQRES 22 A 290 ALA GLY VAL ILE LEU ALA PRO LEU GLN ARG ASN THR ALA SEQRES 23 A 290 GLU ALA LYS THR SEQRES 1 B 290 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 B 290 ASN SER GLU LYS THR GLU VAL VAL LEU LEU ALA CYS GLY SEQRES 3 B 290 SER PHE ASN PRO ILE THR ASN MSE HIS LEU ARG LEU PHE SEQRES 4 B 290 GLU LEU ALA LYS ASP TYR MSE ASN GLY THR GLY ARG TYR SEQRES 5 B 290 THR VAL VAL LYS GLY ILE ILE SER PRO VAL GLY ASP ALA SEQRES 6 B 290 TYR LYS LYS LYS GLY LEU ILE PRO ALA TYR HIS ARG VAL SEQRES 7 B 290 ILE MSE ALA GLU LEU ALA THR LYS ASN SER LYS TRP VAL SEQRES 8 B 290 GLU VAL ASP THR TRP GLU SER LEU GLN LYS GLU TRP LYS SEQRES 9 B 290 GLU THR LEU LYS VAL LEU ARG HIS HIS GLN GLU LYS LEU SEQRES 10 B 290 GLU ALA SER ASP CYS ASP HIS GLN GLN ASN SER PRO THR SEQRES 11 B 290 LEU GLU ARG PRO GLY ARG LYS ARG LYS TRP THR GLU THR SEQRES 12 B 290 GLN ASP SER SER GLN LYS LYS SER LEU GLU PRO LYS THR SEQRES 13 B 290 LYS ALA VAL PRO LYS VAL LYS LEU LEU CYS GLY ALA ASP SEQRES 14 B 290 LEU LEU GLU SER PHE ALA VAL PRO ASN LEU TRP LYS SER SEQRES 15 B 290 GLU ASP ILE THR GLN ILE VAL ALA ASN TYR GLY LEU ILE SEQRES 16 B 290 CYS VAL THR ARG ALA GLY ASN ASP ALA GLN LYS PHE ILE SEQRES 17 B 290 TYR GLU SER ASP VAL LEU TRP LYS HIS ARG SER ASN ILE SEQRES 18 B 290 HIS VAL VAL ASN GLU TRP ILE ALA ASN ASP ILE SER SER SEQRES 19 B 290 THR LYS ILE ARG ARG ALA LEU ARG ARG GLY GLN SER ILE SEQRES 20 B 290 ARG TYR LEU VAL PRO ASP LEU VAL GLN GLU TYR ILE GLU SEQRES 21 B 290 LYS HIS ASN LEU TYR SER SER GLU SER GLU ASP ARG ASN SEQRES 22 B 290 ALA GLY VAL ILE LEU ALA PRO LEU GLN ARG ASN THR ALA SEQRES 23 B 290 GLU ALA LYS THR SEQRES 1 C 290 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 C 290 ASN SER GLU LYS THR GLU VAL VAL LEU LEU ALA CYS GLY SEQRES 3 C 290 SER PHE ASN PRO ILE THR ASN MSE HIS LEU ARG LEU PHE SEQRES 4 C 290 GLU LEU ALA LYS ASP TYR MSE ASN GLY THR GLY ARG TYR SEQRES 5 C 290 THR VAL VAL LYS GLY ILE ILE SER PRO VAL GLY ASP ALA SEQRES 6 C 290 TYR LYS LYS LYS GLY LEU ILE PRO ALA TYR HIS ARG VAL SEQRES 7 C 290 ILE MSE ALA GLU LEU ALA THR LYS ASN SER LYS TRP VAL SEQRES 8 C 290 GLU VAL ASP THR TRP GLU SER LEU GLN LYS GLU TRP LYS SEQRES 9 C 290 GLU THR LEU LYS VAL LEU ARG HIS HIS GLN GLU LYS LEU SEQRES 10 C 290 GLU ALA SER ASP CYS ASP HIS GLN GLN ASN SER PRO THR SEQRES 11 C 290 LEU GLU ARG PRO GLY ARG LYS ARG LYS TRP THR GLU THR SEQRES 12 C 290 GLN ASP SER SER GLN LYS LYS SER LEU GLU PRO LYS THR SEQRES 13 C 290 LYS ALA VAL PRO LYS VAL LYS LEU LEU CYS GLY ALA ASP SEQRES 14 C 290 LEU LEU GLU SER PHE ALA VAL PRO ASN LEU TRP LYS SER SEQRES 15 C 290 GLU ASP ILE THR GLN ILE VAL ALA ASN TYR GLY LEU ILE SEQRES 16 C 290 CYS VAL THR ARG ALA GLY ASN ASP ALA GLN LYS PHE ILE SEQRES 17 C 290 TYR GLU SER ASP VAL LEU TRP LYS HIS ARG SER ASN ILE SEQRES 18 C 290 HIS VAL VAL ASN GLU TRP ILE ALA ASN ASP ILE SER SER SEQRES 19 C 290 THR LYS ILE ARG ARG ALA LEU ARG ARG GLY GLN SER ILE SEQRES 20 C 290 ARG TYR LEU VAL PRO ASP LEU VAL GLN GLU TYR ILE GLU SEQRES 21 C 290 LYS HIS ASN LEU TYR SER SER GLU SER GLU ASP ARG ASN SEQRES 22 C 290 ALA GLY VAL ILE LEU ALA PRO LEU GLN ARG ASN THR ALA SEQRES 23 C 290 GLU ALA LYS THR MODRES 1GRY MSE A 23 MET SELENOMETHIONINE MODRES 1GRY MSE A 35 MET SELENOMETHIONINE MODRES 1GRY MSE A 69 MET SELENOMETHIONINE MODRES 1GRY MSE B 23 MET SELENOMETHIONINE MODRES 1GRY MSE B 35 MET SELENOMETHIONINE MODRES 1GRY MSE B 69 MET SELENOMETHIONINE MODRES 1GRY MSE C 23 MET SELENOMETHIONINE MODRES 1GRY MSE C 35 MET SELENOMETHIONINE MODRES 1GRY MSE C 69 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 35 8 HET MSE A 69 8 HET MSE B 23 8 HET MSE B 35 8 HET MSE B 69 8 HET MSE C 23 8 HET MSE C 35 8 HET MSE C 69 8 HET NMN A 501 22 HET NMN B 501 22 HET NMN C 501 22 HETNAM MSE SELENOMETHIONINE HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 NMN 3(C11 H16 N2 O8 P 1+) HELIX 1 1 THR A 21 GLY A 37 1 17 HELIX 2 2 GLY A 52 LYS A 56 5 5 HELIX 3 3 PRO A 62 LYS A 75 1 14 HELIX 4 4 LYS A 93 GLU A 104 1 12 HELIX 5 5 GLY A 156 PHE A 163 1 8 HELIX 6 6 LYS A 170 TYR A 181 1 12 HELIX 7 7 ALA A 189 GLU A 199 1 11 HELIX 8 8 SER A 200 HIS A 206 1 7 HELIX 9 9 SER A 222 ARG A 232 1 11 HELIX 10 10 PRO A 241 LYS A 250 1 10 HELIX 11 11 GLU A 257 ARG A 261 5 5 HELIX 12 12 THR B 21 GLY B 37 1 17 HELIX 13 13 GLY B 52 LYS B 56 5 5 HELIX 14 14 PRO B 62 LYS B 75 1 14 HELIX 15 15 LYS B 93 GLU B 104 1 12 HELIX 16 16 GLY B 156 PHE B 163 1 8 HELIX 17 17 LYS B 170 TYR B 181 1 12 HELIX 18 18 ALA B 189 GLU B 199 1 11 HELIX 19 19 SER B 200 HIS B 206 1 7 HELIX 20 20 SER B 222 ARG B 232 1 11 HELIX 21 21 PRO B 241 LYS B 250 1 10 HELIX 22 22 GLU B 257 ARG B 261 5 5 HELIX 23 23 THR C 21 GLY C 37 1 17 HELIX 24 24 GLY C 52 LYS C 56 5 5 HELIX 25 25 PRO C 62 LYS C 75 1 14 HELIX 26 26 LYS C 93 GLU C 104 1 12 HELIX 27 27 GLY C 156 PHE C 163 1 8 HELIX 28 28 LYS C 170 TYR C 181 1 12 HELIX 29 29 ALA C 189 SER C 200 1 12 HELIX 30 30 SER C 200 HIS C 206 1 7 HELIX 31 31 SER C 222 ARG C 232 1 11 HELIX 32 32 PRO C 241 LYS C 250 1 10 HELIX 33 33 GLU C 257 ARG C 261 5 5 SHEET 1 AA 6 VAL A 80 VAL A 82 0 SHEET 2 AA 6 THR A 42 PRO A 50 1 O GLY A 46 N GLU A 81 SHEET 3 AA 6 GLU A 8 GLY A 15 1 O VAL A 9 N VAL A 44 SHEET 4 AA 6 LYS A 150 CYS A 155 1 O LYS A 150 N VAL A 10 SHEET 5 AA 6 LEU A 183 THR A 187 1 O ILE A 184 N CYS A 155 SHEET 6 AA 6 ILE A 210 ASN A 214 1 O HIS A 211 N CYS A 185 SHEET 1 BA 6 VAL B 80 VAL B 82 0 SHEET 2 BA 6 THR B 42 PRO B 50 1 O GLY B 46 N GLU B 81 SHEET 3 BA 6 GLU B 8 GLY B 15 1 O VAL B 9 N VAL B 44 SHEET 4 BA 6 LYS B 150 CYS B 155 1 O LYS B 150 N VAL B 10 SHEET 5 BA 6 LEU B 183 THR B 187 1 O ILE B 184 N CYS B 155 SHEET 6 BA 6 ILE B 210 ASN B 214 1 O HIS B 211 N CYS B 185 SHEET 1 CA 6 VAL C 80 VAL C 82 0 SHEET 2 CA 6 THR C 42 PRO C 50 1 O GLY C 46 N GLU C 81 SHEET 3 CA 6 GLU C 8 GLY C 15 1 O VAL C 9 N VAL C 44 SHEET 4 CA 6 LYS C 150 CYS C 155 1 O LYS C 150 N VAL C 10 SHEET 5 CA 6 LEU C 183 THR C 187 1 O ILE C 184 N CYS C 155 SHEET 6 CA 6 ILE C 210 ASN C 214 1 O HIS C 211 N CYS C 185 LINK C ASN A 22 N MSE A 23 LINK C MSE A 23 N HIS A 24 LINK C TYR A 34 N MSE A 35 LINK C MSE A 35 N ASN A 36 LINK C ILE A 68 N MSE A 69 LINK C MSE A 69 N ALA A 70 LINK C ASN B 22 N MSE B 23 LINK C MSE B 23 N HIS B 24 LINK C TYR B 34 N MSE B 35 LINK C MSE B 35 N ASN B 36 LINK C ILE B 68 N MSE B 69 LINK C MSE B 69 N ALA B 70 LINK C ASN C 22 N MSE C 23 LINK C MSE C 23 N HIS C 24 LINK C TYR C 34 N MSE C 35 LINK C MSE C 35 N ASN C 36 LINK C ILE C 68 N MSE C 69 LINK C MSE C 69 N ALA C 70 SITE 1 NMA 10 GLY A 15 SER A 16 TYR A 55 LYS A 57 SITE 2 NMA 10 LYS A 93 GLU A 94 LEU A 159 LEU A 168 SITE 3 NMA 10 TRP A 169 ASP A 173 SITE 1 NMB 9 GLY B 15 SER B 16 TYR B 55 LYS B 57 SITE 2 NMB 9 LYS B 93 GLU B 94 LEU B 159 LEU B 168 SITE 3 NMB 9 TRP B 169 SITE 1 NMC 9 CYS C 14 GLY C 15 SER C 16 TYR C 55 SITE 2 NMC 9 LYS C 57 GLU C 94 LEU C 159 LEU C 168 SITE 3 NMC 9 TRP C 169 CRYST1 140.800 235.700 89.000 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007102 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011236 0.00000 MTRIX1 1 -0.455600 0.862800 -0.219300 -62.17000 1 MTRIX2 1 -0.865000 -0.487300 -0.120100 118.30000 1 MTRIX3 1 -0.210500 0.134900 0.968200 -9.50100 1 MTRIX1 2 -0.492800 -0.844100 -0.211100 69.52000 1 MTRIX2 2 0.850300 -0.518700 0.089170 116.20000 1 MTRIX3 2 -0.184800 -0.135600 0.973400 11.44000 1