HEADER TRANSFERASE(GLUTATHIONE) 08-SEP-93 1GSB TITLE NEW CRYSTAL FORMS OF A MU CLASS GLUTATHIONE S-TRANSFERASE FROM RAT TITLE 2 LIVER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: LIVER KEYWDS TRANSFERASE(GLUTATHIONE) EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D AUTHOR J.-H.FU,J.P.ROSE,B.-C.WANG REVDAT 4 07-FEB-24 1GSB 1 REMARK REVDAT 3 24-FEB-09 1GSB 1 VERSN REVDAT 2 02-SEP-08 1GSB 1 JRNL REVDAT 1 31-OCT-93 1GSB 0 JRNL AUTH J.H.FU,J.ROSE,M.F.TAM,B.C.WANG JRNL TITL NEW CRYSTAL FORMS OF A MU-CLASS GLUTATHIONE S-TRANSFERASE JRNL TITL 2 FROM RAT LIVER. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 50 219 1994 JRNL REFN ISSN 0907-4449 JRNL PMID 15299462 JRNL DOI 10.1107/S0907444993009370 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-H.FU,J.ROSE,Y.-J.CHUNG,M.F.TAM,B.-C.WANG REMARK 1 TITL CRYSTALS OF ISOENZYME 3-3 OF RAT LIVER GLUTATHIONE REMARK 1 TITL 2 S-TRANSFERASE WITH AND WITHOUT INHIBITOR REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 47 813 1991 REMARK 1 REFN ISSN 0108-7681 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.74750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1GSB A 1 217 UNP P04905 GSTM1_RAT 1 217 DBREF 1GSB B 1 217 UNP P04905 GSTM1_RAT 1 217 DBREF 1GSB C 1 217 UNP P04905 GSTM1_RAT 1 217 DBREF 1GSB D 1 217 UNP P04905 GSTM1_RAT 1 217 SEQRES 1 A 217 PRO MET ILE LEU GLY TYR TRP ASN VAL ARG GLY LEU THR SEQRES 2 A 217 HIS PRO ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 A 217 TYR GLU GLU LYS ARG TYR ALA MET GLY ASP ALA PRO ASP SEQRES 4 A 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 A 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 A 217 SER ARG LYS ILE THR GLN SER ASN ALA ILE MET ARG TYR SEQRES 7 A 217 LEU ALA ARG LYS HIS HIS LEU CYS GLY GLU THR GLU GLU SEQRES 8 A 217 GLU ARG ILE ARG ALA ASP ILE VAL GLU ASN GLN VAL MET SEQRES 9 A 217 ASP ASN ARG MET GLN LEU ILE MET LEU CYS TYR ASN PRO SEQRES 10 A 217 ASP PHE GLU LYS GLN LYS PRO GLU PHE LEU LYS THR ILE SEQRES 11 A 217 PRO GLU LYS MET LYS LEU TYR SER GLU PHE LEU GLY LYS SEQRES 12 A 217 ARG PRO TRP PHE ALA GLY ASP LYS VAL THR TYR VAL ASP SEQRES 13 A 217 PHE LEU ALA TYR ASP ILE LEU ASP GLN TYR HIS ILE PHE SEQRES 14 A 217 GLU PRO LYS CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 A 217 PHE LEU ALA ARG PHE GLU GLY LEU LYS LYS ILE SER ALA SEQRES 16 A 217 TYR MET LYS SER SER ARG TYR LEU SER THR PRO ILE PHE SEQRES 17 A 217 SER LYS LEU ALA GLN TRP SER ASN LYS SEQRES 1 B 217 PRO MET ILE LEU GLY TYR TRP ASN VAL ARG GLY LEU THR SEQRES 2 B 217 HIS PRO ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 B 217 TYR GLU GLU LYS ARG TYR ALA MET GLY ASP ALA PRO ASP SEQRES 4 B 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 B 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 B 217 SER ARG LYS ILE THR GLN SER ASN ALA ILE MET ARG TYR SEQRES 7 B 217 LEU ALA ARG LYS HIS HIS LEU CYS GLY GLU THR GLU GLU SEQRES 8 B 217 GLU ARG ILE ARG ALA ASP ILE VAL GLU ASN GLN VAL MET SEQRES 9 B 217 ASP ASN ARG MET GLN LEU ILE MET LEU CYS TYR ASN PRO SEQRES 10 B 217 ASP PHE GLU LYS GLN LYS PRO GLU PHE LEU LYS THR ILE SEQRES 11 B 217 PRO GLU LYS MET LYS LEU TYR SER GLU PHE LEU GLY LYS SEQRES 12 B 217 ARG PRO TRP PHE ALA GLY ASP LYS VAL THR TYR VAL ASP SEQRES 13 B 217 PHE LEU ALA TYR ASP ILE LEU ASP GLN TYR HIS ILE PHE SEQRES 14 B 217 GLU PRO LYS CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 B 217 PHE LEU ALA ARG PHE GLU GLY LEU LYS LYS ILE SER ALA SEQRES 16 B 217 TYR MET LYS SER SER ARG TYR LEU SER THR PRO ILE PHE SEQRES 17 B 217 SER LYS LEU ALA GLN TRP SER ASN LYS SEQRES 1 C 217 PRO MET ILE LEU GLY TYR TRP ASN VAL ARG GLY LEU THR SEQRES 2 C 217 HIS PRO ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 C 217 TYR GLU GLU LYS ARG TYR ALA MET GLY ASP ALA PRO ASP SEQRES 4 C 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 C 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 C 217 SER ARG LYS ILE THR GLN SER ASN ALA ILE MET ARG TYR SEQRES 7 C 217 LEU ALA ARG LYS HIS HIS LEU CYS GLY GLU THR GLU GLU SEQRES 8 C 217 GLU ARG ILE ARG ALA ASP ILE VAL GLU ASN GLN VAL MET SEQRES 9 C 217 ASP ASN ARG MET GLN LEU ILE MET LEU CYS TYR ASN PRO SEQRES 10 C 217 ASP PHE GLU LYS GLN LYS PRO GLU PHE LEU LYS THR ILE SEQRES 11 C 217 PRO GLU LYS MET LYS LEU TYR SER GLU PHE LEU GLY LYS SEQRES 12 C 217 ARG PRO TRP PHE ALA GLY ASP LYS VAL THR TYR VAL ASP SEQRES 13 C 217 PHE LEU ALA TYR ASP ILE LEU ASP GLN TYR HIS ILE PHE SEQRES 14 C 217 GLU PRO LYS CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 C 217 PHE LEU ALA ARG PHE GLU GLY LEU LYS LYS ILE SER ALA SEQRES 16 C 217 TYR MET LYS SER SER ARG TYR LEU SER THR PRO ILE PHE SEQRES 17 C 217 SER LYS LEU ALA GLN TRP SER ASN LYS SEQRES 1 D 217 PRO MET ILE LEU GLY TYR TRP ASN VAL ARG GLY LEU THR SEQRES 2 D 217 HIS PRO ILE ARG LEU LEU LEU GLU TYR THR ASP SER SER SEQRES 3 D 217 TYR GLU GLU LYS ARG TYR ALA MET GLY ASP ALA PRO ASP SEQRES 4 D 217 TYR ASP ARG SER GLN TRP LEU ASN GLU LYS PHE LYS LEU SEQRES 5 D 217 GLY LEU ASP PHE PRO ASN LEU PRO TYR LEU ILE ASP GLY SEQRES 6 D 217 SER ARG LYS ILE THR GLN SER ASN ALA ILE MET ARG TYR SEQRES 7 D 217 LEU ALA ARG LYS HIS HIS LEU CYS GLY GLU THR GLU GLU SEQRES 8 D 217 GLU ARG ILE ARG ALA ASP ILE VAL GLU ASN GLN VAL MET SEQRES 9 D 217 ASP ASN ARG MET GLN LEU ILE MET LEU CYS TYR ASN PRO SEQRES 10 D 217 ASP PHE GLU LYS GLN LYS PRO GLU PHE LEU LYS THR ILE SEQRES 11 D 217 PRO GLU LYS MET LYS LEU TYR SER GLU PHE LEU GLY LYS SEQRES 12 D 217 ARG PRO TRP PHE ALA GLY ASP LYS VAL THR TYR VAL ASP SEQRES 13 D 217 PHE LEU ALA TYR ASP ILE LEU ASP GLN TYR HIS ILE PHE SEQRES 14 D 217 GLU PRO LYS CYS LEU ASP ALA PHE PRO ASN LEU LYS ASP SEQRES 15 D 217 PHE LEU ALA ARG PHE GLU GLY LEU LYS LYS ILE SER ALA SEQRES 16 D 217 TYR MET LYS SER SER ARG TYR LEU SER THR PRO ILE PHE SEQRES 17 D 217 SER LYS LEU ALA GLN TRP SER ASN LYS CRYST1 101.554 69.495 81.393 90.00 113.63 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009847 0.000000 0.004308 0.00000 SCALE2 0.000000 0.014390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013410 0.00000