HEADER TRANSFERASE(GLUTATHIONE) 28-MAY-92 1GSR OBSLTE 08-NOV-96 1GSR 2GSR TITLE THE THREE-DIMENSIONAL STRUCTURE OF CLASS PI GLUTATHIONE S- TITLE 2 TRANSFERASE FROM HUMAN PLACENTA IN COMPLEX WITH S- TITLE 3 HEXYLGLUTATHIONE AT 2.8 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS TRANSFERASE(GLUTATHIONE) EXPDTA X-RAY DIFFRACTION AUTHOR P.REINEMER,H.W.DIRR,R.LADENSTEIN,J.SCHAEFFER,O.GALLAY, AUTHOR 2 R.HUBER REVDAT 1 31-JAN-94 1GSR 0 JRNL AUTH P.REINEMER,H.W.DIRR,R.LADENSTEIN,J.SCHAEFFER, JRNL AUTH 2 O.GALLAY,R.HUBER JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF CLASS PI JRNL TITL 2 GLUTATHIONE S-TRANSFERASE FROM HUMAN PLACENTA IN JRNL TITL 3 COMPLEX WITH S-HEXYLGLUTATHIONE AT 2.8 ANGSTROMS JRNL TITL 4 RESOLUTION JRNL REF /EMBO J. V. 10 1997 1991 JRNL REFN ASTM EMJODG UK ISSN 0261-4189 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF 1GSR REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GSR COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 35 CE MET B 35 3645 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 28 NE1 TRP A 28 CE2 -0.092 REMARK 500 TRP A 38 NE1 TRP A 38 CE2 -0.105 REMARK 500 HIS A 69 CE1 HIS A 69 NE2 0.090 REMARK 500 HIS A 160 ND1 HIS A 160 CE1 0.097 REMARK 500 TRP B 28 NE1 TRP B 28 CE2 -0.097 REMARK 500 TRP B 38 NE1 TRP B 38 CE2 -0.100 REMARK 500 HIS B 69 CE1 HIS B 69 NE2 0.090 REMARK 500 HIS B 123 ND1 HIS B 123 CE1 0.090 REMARK 500 HIS B 160 ND1 HIS B 160 CE1 0.090 SEQRES 1 A 207 PRO PRO TYR THR ILE THR TYR PHE PRO VAL ARG GLY ARG SEQRES 2 A 207 CYS GLU ALA MET ARG MET LEU LEU ALA ASP GLN ASP GLN SEQRES 3 A 207 SER TRP LYS GLU GLU VAL VAL THR MET GLU THR TRP PRO SEQRES 4 A 207 PRO LEU LYS PRO SER CYS LEU PHE ARG GLN LEU PRO LYS SEQRES 5 A 207 PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER ASN ALA SEQRES 6 A 207 ILE LEU ARG HIS LEU GLY ARG SER PHE GLY LEU TYR GLY SEQRES 7 A 207 LYS ASP GLN LYS GLU ALA ALA LEU VAL ASP MET VAL ASN SEQRES 8 A 207 ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ALA THR LEU SEQRES 9 A 207 ILE TYR THR ASN TYR GLU ALA GLY LYS GLU LYS TYR VAL SEQRES 10 A 207 LYS GLU LEU PRO GLU HIS LEU LYS PRO PHE GLU THR LEU SEQRES 11 A 207 LEU SER GLN ASN GLN GLY GLY GLN ALA PHE VAL VAL GLY SEQRES 12 A 207 SER GLN ILE SER PHE ALA ASP TYR ASN LEU LEU ASP LEU SEQRES 13 A 207 LEU ARG ILE HIS GLN VAL LEU ASN PRO SER CYS LEU ASP SEQRES 14 A 207 ALA PHE PRO LEU LEU SER ALA TYR VAL ALA ARG LEU SER SEQRES 15 A 207 ALA ARG PRO LYS ILE LYS ALA PHE LEU ALA SER PRO GLU SEQRES 16 A 207 HIS VAL ASN ARG PRO ILE ASN GLY ASN GLY LYS GLN SEQRES 1 B 207 PRO PRO TYR THR ILE THR TYR PHE PRO VAL ARG GLY ARG SEQRES 2 B 207 CYS GLU ALA MET ARG MET LEU LEU ALA ASP GLN ASP GLN SEQRES 3 B 207 SER TRP LYS GLU GLU VAL VAL THR MET GLU THR TRP PRO SEQRES 4 B 207 PRO LEU LYS PRO SER CYS LEU PHE ARG GLN LEU PRO LYS SEQRES 5 B 207 PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER ASN ALA SEQRES 6 B 207 ILE LEU ARG HIS LEU GLY ARG SER PHE GLY LEU TYR GLY SEQRES 7 B 207 LYS ASP GLN LYS GLU ALA ALA LEU VAL ASP MET VAL ASN SEQRES 8 B 207 ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ALA THR LEU SEQRES 9 B 207 ILE TYR THR ASN TYR GLU ALA GLY LYS GLU LYS TYR VAL SEQRES 10 B 207 LYS GLU LEU PRO GLU HIS LEU LYS PRO PHE GLU THR LEU SEQRES 11 B 207 LEU SER GLN ASN GLN GLY GLY GLN ALA PHE VAL VAL GLY SEQRES 12 B 207 SER GLN ILE SER PHE ALA ASP TYR ASN LEU LEU ASP LEU SEQRES 13 B 207 LEU ARG ILE HIS GLN VAL LEU ASN PRO SER CYS LEU ASP SEQRES 14 B 207 ALA PHE PRO LEU LEU SER ALA TYR VAL ALA ARG LEU SER SEQRES 15 B 207 ALA ARG PRO LYS ILE LYS ALA PHE LEU ALA SER PRO GLU SEQRES 16 B 207 HIS VAL ASN ARG PRO ILE ASN GLY ASN GLY LYS GLN FTNOTE 1 CIS PROLINE - PRO A 2 FTNOTE 2 CIS PROLINE - PRO A 51 FTNOTE 3 CIS PROLINE - PRO B 2 FTNOTE 4 CIS PROLINE - PRO B 51 HET GTS A 209 23 HET GTS B 209 23 HETNAM GTS GLUTATHIONE SULFONIC ACID FORMUL 3 GTS 2(C10 H17 N3 O9 S) HELIX 1 AA GLU A 15 ASP A 23 1 9 HELIX 2 AB TRP A 38 PRO A 43 1CLASS: 1/5 6 HELIX 3 AC SER A 63 PHE A 74 1 12 HELIX 4 AD GLN A 81 THR A 107 1 27 HELIX 5 AE TYR A 109 GLN A 133 1 25 HELIX 6 A31 GLN A 135 GLY A 137 5 3 HELIX 7 AF PHE A 148 LEU A 163 1 16 HELIX 8 AG PRO A 172 SER A 182 1 11 HELIX 9 AH PRO A 185 ALA A 192 1 8 HELIX 10 BA GLU B 15 ASP B 23 1 9 HELIX 11 BB TRP B 38 PRO B 43 1CLASS: 1/5 6 HELIX 12 BC SER B 63 PHE B 74 1 12 HELIX 13 BD GLN B 81 THR B 107 1 27 HELIX 14 BE TYR B 109 GLN B 133 1 25 HELIX 15 B31 GLN B 135 GLY B 137 5 3 HELIX 16 BF PHE B 148 LEU B 163 1 16 HELIX 17 BG PRO B 172 SER B 182 1 11 HELIX 18 BH PRO B 185 ALA B 192 1 8 SHEET 1 S1A 4 LYS A 29 VAL A 32 0 SHEET 2 S1A 4 TYR A 3 TYR A 7 1 SHEET 3 S1A 4 LYS A 52 ASP A 55 -1 SHEET 4 S1A 4 LEU A 58 TYR A 61 -1 SHEET 1 S1B 4 LYS B 29 VAL B 32 0 SHEET 2 S1B 4 TYR B 3 TYR B 7 1 SHEET 3 S1B 4 LYS B 52 ASP B 55 -1 SHEET 4 S1B 4 LEU B 58 TYR B 61 -1 CISPEP 1 PRO A 1 PRO A 2 0 -8.65 CISPEP 2 LEU A 50 PRO A 51 0 9.27 CISPEP 3 PRO B 1 PRO B 2 0 -1.69 CISPEP 4 LEU B 50 PRO B 51 0 16.40 CRYST1 101.250 82.530 54.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018423 0.00000