HEADER TRANSCRIPTION 09-JAN-02 1GT0 TITLE CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* COMPND 3 TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FGF-4 ENHANCER; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* COMPND 9 CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FGF-4 ENHANCER; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: OCTAMER-BINDING TRANSCRIPTION FACTOR 1; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: POU DOMAIN RESIDUES 280-438; COMPND 17 SYNONYM: OTF-1, NF-A1, OCT-1; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: TRANSCRIPTION FACTOR SOX-2; COMPND 22 CHAIN: D; COMPND 23 FRAGMENT: HMG DOMAIN RESIDUES 41-120; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_COMMON: MOUSE; SOURCE 5 ORGANISM_TAXID: 10090; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-24D; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_COMMON: MOUSE; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PET24-D KEYWDS TRANSCRIPTION FACTOR, POU FACTORS, SOX PROTEINS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.REMENYI,M.WILMANNS REVDAT 6 08-MAY-24 1GT0 1 REMARK REVDAT 5 24-JUL-19 1GT0 1 REMARK REVDAT 4 14-NOV-12 1GT0 1 HEADER REMARK DBREF FORMUL REVDAT 3 24-FEB-09 1GT0 1 VERSN REVDAT 2 20-AUG-03 1GT0 1 JRNL REVDAT 1 30-JAN-03 1GT0 0 JRNL AUTH A.REMENYI,K.LINS,L.J.NISSEN,R.REINBOLD,H.R.SCHOLER, JRNL AUTH 2 M.WILMANNS JRNL TITL CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX SUGGESTS JRNL TITL 2 DIFFERENTIAL ASSEMBLY OF OCT4 AND SOX2 ON TWO ENHANCERS JRNL REF GENES DEV. V. 17 2048 2003 JRNL REFN ISSN 0890-9369 JRNL PMID 12923055 JRNL DOI 10.1101/GAD.269303 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 858 REMARK 3 BIN R VALUE (WORKING SET) : 0.3935 REMARK 3 BIN FREE R VALUE : 0.4005 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.061 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1765 REMARK 3 NUCLEIC ACID ATOMS : 978 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1290009216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8460 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 50 MM HEPES PH 7.0, 20 MM REMARK 280 MGCL2, 5% GLYCEROL, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN C ENGINEERED MUTATION CYS340SER CYS428SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 1 REMARK 465 GLU C 2 REMARK 465 SER C 79 REMARK 465 SER C 80 REMARK 465 ASP C 81 REMARK 465 SER C 82 REMARK 465 SER C 83 REMARK 465 LEU C 84 REMARK 465 SER C 85 REMARK 465 SER C 86 REMARK 465 PRO C 87 REMARK 465 SER C 88 REMARK 465 ALA C 89 REMARK 465 LEU C 90 REMARK 465 ASN C 91 REMARK 465 SER C 92 REMARK 465 PRO C 93 REMARK 465 GLY C 94 REMARK 465 ILE C 95 REMARK 465 GLU C 96 REMARK 465 ASN C 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 22 CG CD CE NZ REMARK 470 LYS C 157 CG CD CE NZ REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 159 CA C O CB CG1 CG2 CD1 REMARK 470 ARG D 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 20 CG CD CE NZ REMARK 470 GLU D 24 CG CD OE1 OE2 REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 71 CG CD CE NZ REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 LYS D 79 CG CD CE NZ REMARK 470 THR D 80 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT A 6 N1 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 DG A 7 N9 - C1' - C2' ANGL. DEV. = 10.3 DEGREES REMARK 500 DT A 8 N1 - C1' - C2' ANGL. DEV. = 10.4 DEGREES REMARK 500 DT A 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT A 10 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 DG A 12 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DG A 12 N9 - C1' - C2' ANGL. DEV. = 9.2 DEGREES REMARK 500 DT A 14 N1 - C1' - C2' ANGL. DEV. = 12.3 DEGREES REMARK 500 DC A 16 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 DC A 16 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 17 C2' - C3' - O3' ANGL. DEV. = -25.0 DEGREES REMARK 500 DT A 17 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DT A 17 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA A 18 N9 - C1' - C2' ANGL. DEV. = 10.0 DEGREES REMARK 500 DA A 19 N9 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 DT A 20 N1 - C1' - C2' ANGL. DEV. = 10.2 DEGREES REMARK 500 DG A 22 C2' - C3' - O3' ANGL. DEV. = -15.0 DEGREES REMARK 500 DG A 22 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC B 27 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 47 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 23 9.08 -57.51 REMARK 500 ASN C 40 132.48 179.43 REMARK 500 ASN C 123 144.30 -172.68 REMARK 500 LYS C 142 -71.51 -35.78 REMARK 500 LYS C 157 30.03 -68.10 REMARK 500 ARG C 158 -74.39 -142.18 REMARK 500 LYS D 20 42.85 -71.84 REMARK 500 MET D 21 -33.67 -170.28 REMARK 500 PRO D 26 -174.59 -61.29 REMARK 500 LYS D 27 -7.69 61.50 REMARK 500 LYS D 42 5.94 -63.67 REMARK 500 GLU D 46 -17.23 -48.84 REMARK 500 ARG D 50 -44.75 -28.74 REMARK 500 ARG D 76 103.00 -48.25 REMARK 500 LYS D 77 156.28 -49.19 REMARK 500 LYS D 79 -46.67 -173.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT A 6 0.07 SIDE CHAIN REMARK 500 DG A 7 0.06 SIDE CHAIN REMARK 500 DA A 13 0.08 SIDE CHAIN REMARK 500 DT A 14 0.07 SIDE CHAIN REMARK 500 DG A 15 0.07 SIDE CHAIN REMARK 500 DA A 18 0.07 SIDE CHAIN REMARK 500 DA A 19 0.07 SIDE CHAIN REMARK 500 DT A 20 0.07 SIDE CHAIN REMARK 500 DG A 21 0.08 SIDE CHAIN REMARK 500 DG A 22 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2002 DISTANCE = 6.15 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CQT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, REMARK 900 THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT REMARK 900 RELATED ID: 1E3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OCT-1 POU DIMER BOUND TO MORE REMARK 900 RELATED ID: 1HF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF OCT-1 BOUND TO DNA REMARK 900 AS A DIMER REMARK 900 RELATED ID: 1OCT RELATED DB: PDB REMARK 900 OCT-1 (POU DOMAIN) REMARK 900 RELATED ID: 1POG RELATED DB: PDB REMARK 900 RELATED ID: 1POU RELATED DB: PDB REMARK 900 OCT-1 (POU-SPECIFIC DOMAIN) (NMR, 20 STRUCTURES) DBREF 1GT0 A 1 24 PDB 1GT0 1GT0 1 24 DBREF 1GT0 B 25 48 PDB 1GT0 1GT0 25 48 DBREF 1GT0 C 1 160 UNP P14859 PO2F1_HUMAN 280 438 DBREF 1GT0 D 1 80 UNP P48432 SOX2_MOUSE 41 120 SEQADV 1GT0 SER C 61 UNP P14859 CYS 340 ENGINEERED MUTATION SEQADV 1GT0 SER C 150 UNP P14859 CYS 428 ENGINEERED MUTATION SEQRES 1 A 24 DT DT DC DT DT DT DG DT DT DT DG DG DA SEQRES 2 A 24 DT DG DC DT DA DA DT DG DG DG DA SEQRES 1 B 24 DA DT DC DC DC DA DT DT DA DG DC DA DT SEQRES 2 B 24 DC DC DA DA DA DC DA DA DA DG DA SEQRES 1 C 159 GLU GLU PRO SER ASP LEU GLU GLU LEU GLU GLN PHE ALA SEQRES 2 C 159 LYS THR PHE LYS GLN ARG ARG ILE LYS LEU GLY PHE THR SEQRES 3 C 159 GLN GLY ASP VAL GLY LEU ALA MET GLY LYS LEU TYR GLY SEQRES 4 C 159 ASN ASP PHE SER GLN THR THR ILE SER ARG PHE GLU ALA SEQRES 5 C 159 LEU ASN LEU SER PHE LYS ASN MET SER LYS LEU LYS PRO SEQRES 6 C 159 LEU LEU GLU LYS TRP LEU ASN ASP ALA GLU ASN LEU SER SEQRES 7 C 159 SER ASP SER SER LEU SER SER PRO SER ALA LEU ASN SER SEQRES 8 C 159 PRO GLY ILE GLU GLY LEU SER ARG ARG ARG LYS LYS ARG SEQRES 9 C 159 THR SER ILE GLU THR ASN ILE ARG VAL ALA LEU GLU LYS SEQRES 10 C 159 SER PHE LEU GLU ASN GLN LYS PRO THR SER GLU GLU ILE SEQRES 11 C 159 THR MET ILE ALA ASP GLN LEU ASN MET GLU LYS GLU VAL SEQRES 12 C 159 ILE ARG VAL TRP PHE SER ASN ARG ARG GLN LYS GLU LYS SEQRES 13 C 159 ARG ILE ASN SEQRES 1 D 80 ASP ARG VAL LYS ARG PRO MET ASN ALA PHE MET VAL TRP SEQRES 2 D 80 SER ARG GLY GLN ARG ARG LYS MET ALA GLN GLU ASN PRO SEQRES 3 D 80 LYS MET HIS ASN SER GLU ILE SER LYS ARG LEU GLY ALA SEQRES 4 D 80 GLU TRP LYS LEU LEU SER GLU THR GLU LYS ARG PRO PHE SEQRES 5 D 80 ILE ASP GLU ALA LYS ARG LEU ARG ALA LEU HIS MET LYS SEQRES 6 D 80 GLU HIS PRO ASP TYR LYS TYR ARG PRO ARG ARG LYS THR SEQRES 7 D 80 LYS THR FORMUL 5 HOH *90(H2 O) HELIX 1 1 SER C 4 LEU C 23 1 20 HELIX 2 2 THR C 26 GLY C 39 1 14 HELIX 3 3 SER C 43 ALA C 52 1 10 HELIX 4 4 SER C 56 ASN C 76 1 21 HELIX 5 5 GLU C 109 ASN C 123 1 15 HELIX 6 6 THR C 127 ASN C 139 1 13 HELIX 7 7 GLU C 141 LYS C 157 1 17 HELIX 8 8 ASN D 8 GLN D 23 1 16 HELIX 9 9 HIS D 29 LYS D 42 1 14 HELIX 10 10 SER D 45 HIS D 67 1 23 CRYST1 72.800 72.800 172.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013736 0.007931 0.000000 0.00000 SCALE2 0.000000 0.015861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005800 0.00000