HEADER HYDROLASE/HYDROLASE INHIBITOR 16-JAN-02 1GTL TITLE THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP) - TITLE 2 COMPLEX WITH AC-ILE-PRO-PHE-CHO COMPND MOL_ID: 1; COMPND 2 MOLECULE: KUMAMOLYSIN; COMPND 3 CHAIN: 1, 2; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALDEHYDE INHIBITOR; COMPND 7 CHAIN: 3, 4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS NOVOSP. MN-32; SOURCE 3 ORGANISM_TAXID: 198803; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM 109; SOURCE 7 OTHER_DETAILS: BACTERIUM FOUND IN HOTSPRING WATER NEAR VOLCANOES; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS SERINE-CARBOXYL TYPE PROTEINASE, THERMOSTABLE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.COMELLAS-BIGLER,P.FUENTES-PRIOR,K.MASKOS,R.HUBER,H.OYAMA,K.UCHIDA, AUTHOR 2 B.M.DUNN,K.ODA,W.BODE REVDAT 7 13-DEC-23 1GTL 1 REMARK HETSYN LINK REVDAT 6 28-FEB-18 1GTL 1 REMARK REVDAT 5 21-DEC-16 1GTL 1 TITLE SOURCE REVDAT 4 13-JUL-11 1GTL 1 VERSN REVDAT 3 24-FEB-09 1GTL 1 VERSN REVDAT 2 19-JUN-03 1GTL 1 TITLE REVDAT 1 13-JUN-02 1GTL 0 JRNL AUTH M.COMELLAS-BIGLER,P.FUENTES-PRIOR,K.MASKOS,R.HUBER,H.OYAMA, JRNL AUTH 2 K.UCHIDA,B.M.DUNN,K.ODA,W.BODE JRNL TITL THE 1.4 A CRYSTAL STRUCTURE OF KUMAMOLYSIN. A THERMOSTABLE JRNL TITL 2 SERINE-CARBOXYL-TYPE PROTEINASE JRNL REF STRUCTURE V. 10 865 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12057200 JRNL DOI 10.1016/S0969-2126(02)00772-4 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 13563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.580 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1290009276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 24.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GA1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 3 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 2, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE UNBOUND INHIBITOR (CHAIN 3/4) IS ACE-ILE-PRO-PHA, N-ACETYL-L- REMARK 400 ISOLEUCYL-L-PROLYL-L-PHENYLALANINE WITH C-TERMINAL PHENYLALANINAL. REMARK 400 UPON REACTION THE INHIBITOR COVALENTLY BINDS TO THE OG ATOM OF SER REMARK 400 278 OF THE ENZYME (CHAIN 1/2) FORMING A TETRAHEDRAL HEMIACETAL. DUE REMARK 400 TO THE CHEMICAL CHANGE, THE C-TERMINAL RESIDUE IS REPRESENTED IN REMARK 400 SEQUENCE AS PHL, PHENYLALANINOL REMARK 400 REMARK 400 THE N-ACETYL-L-ISOLEUCYL-L-PROLYL-L-PHENYLALANINAL IS PEPTIDE-LIKE, REMARK 400 A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: N-ACETYL-L-ISOLEUCYL-L-PROLYL-L-PHENYLALANINAL REMARK 400 CHAIN: 3, 4 REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA 2 1 REMARK 475 ALA 2 2 REMARK 475 PRO 2 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU 1 19 CD OE1 OE2 REMARK 480 GLN 1 24 OE1 NE2 REMARK 480 GLU 1 39 CD OE1 OE2 REMARK 480 GLN 1 55 CD OE1 NE2 REMARK 480 GLN 1 67 CB CG CD OE1 NE2 REMARK 480 LYS 1 121 CE NZ REMARK 480 GLN 1 172 OE1 NE2 REMARK 480 ARG 1 194 NH1 NH2 REMARK 480 ARG 1 223 CG CD NE CZ NH1 NH2 REMARK 480 LYS 1 297 CD CE NZ REMARK 480 ARG 1 329 NE CZ NH1 NH2 REMARK 480 LEU 1 352 CD1 CD2 REMARK 480 GLN 1 353 CD OE1 NE2 REMARK 480 PRO 1 357 CB CG CD REMARK 480 GLN 2 13 CD OE1 NE2 REMARK 480 GLU 2 39 CB CG CD OE1 OE2 REMARK 480 GLN 2 55 CD OE1 NE2 REMARK 480 GLN 2 67 CB CG CD OE1 NE2 REMARK 480 ASP 2 150 OD1 OD2 REMARK 480 ARG 2 223 CG CD NE CZ NH1 NH2 REMARK 480 LYS 2 297 CD CE NZ REMARK 480 ARG 2 329 NE CZ NH1 NH2 REMARK 480 GLN 2 353 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO 1 238 O HOH 1 2069 2.11 REMARK 500 CG GLN 1 353 O HOH 1 2106 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU 1 356 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO 3 3 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO 4 3 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR 1 4 -162.22 -116.57 REMARK 500 PRO 1 75 -49.74 -29.40 REMARK 500 ALA 1 93 -178.62 -62.52 REMARK 500 LYS 1 121 59.99 37.84 REMARK 500 ALA 1 153 20.55 -64.55 REMARK 500 ALA 1 199 -33.36 -37.68 REMARK 500 GLU 1 205 109.43 -165.87 REMARK 500 PRO 1 226 171.62 -58.92 REMARK 500 ALA 1 244 -165.03 51.87 REMARK 500 ALA 1 257 -15.89 -145.35 REMARK 500 THR 1 261 39.07 -152.44 REMARK 500 THR 1 272 -157.02 -129.21 REMARK 500 GLN 1 293 -70.45 -52.30 REMARK 500 GLU 1 312 1.25 -62.92 REMARK 500 ARG 1 329 49.18 73.06 REMARK 500 TRP 1 337 132.26 -31.08 REMARK 500 PRO 1 339 20.98 -66.48 REMARK 500 PRO 2 75 -16.96 -46.51 REMARK 500 ALA 2 90 49.84 -142.01 REMARK 500 LYS 2 121 52.84 32.95 REMARK 500 PRO 2 132 129.66 -36.91 REMARK 500 PRO 2 138 -38.93 -39.81 REMARK 500 ALA 2 142 -74.53 -53.29 REMARK 500 GLN 2 172 51.96 -148.67 REMARK 500 PRO 2 181 2.01 -68.48 REMARK 500 GLU 2 205 113.93 -169.75 REMARK 500 ALA 2 244 48.60 30.69 REMARK 500 ALA 2 257 -5.12 -145.51 REMARK 500 THR 2 261 30.90 -143.57 REMARK 500 GLU 2 312 -11.16 -49.56 REMARK 500 PRO 2 339 41.30 -81.36 REMARK 500 CYS 2 340 -41.02 -136.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR 1 45 0.07 SIDE CHAIN REMARK 500 TYR 1 331 0.07 SIDE CHAIN REMARK 500 TYR 2 331 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 11358 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 1 316 OD1 REMARK 620 2 ILE 1 317 O 65.1 REMARK 620 3 GLY 1 334 O 84.1 73.6 REMARK 620 4 GLY 1 336 O 121.3 142.2 70.4 REMARK 620 5 ASP 1 338 OD2 133.7 70.9 69.9 85.9 REMARK 620 6 HOH 12102 O 118.1 95.6 149.2 109.2 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 21358 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 2 316 OD1 REMARK 620 2 ILE 2 317 O 65.4 REMARK 620 3 GLY 2 334 O 91.5 82.3 REMARK 620 4 GLY 2 336 O 117.7 150.5 68.4 REMARK 620 5 ASP 2 338 OD2 145.3 80.0 83.2 92.2 REMARK 620 6 HOH 22097 O 109.4 90.0 152.3 113.9 69.2 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA 1 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 1 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA 2 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 2 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN 3 OF ALDEHYDE INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN 4 OF ALDEHYDE INHIBITOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GT9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE- CARBOXYL TYPE REMARK 900 PROTEINASE, KUMAMOLYSIN REMARK 900 RELATED ID: 1GTG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE- CARBOXYL TYPE REMARK 900 PROTEINASE, KUMAMOLYSIN REMARK 900 RELATED ID: 1GTJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE- CARBOXYL TYPE REMARK 900 PROTEINASE, KUMAMOLYSIN DBREF 1GTL 1 1 357 PDB 1GTL 1GTL 1 357 DBREF 1GTL 2 1 357 PDB 1GTL 1GTL 1 357 DBREF 1GTL 3 1 4 PDB 1GTL 1GTL 1 4 DBREF 1GTL 4 1 4 PDB 1GTL 1GTL 1 4 SEQRES 1 1 357 ALA ALA PRO THR ALA TYR THR PRO LEU ASP VAL ALA GLN SEQRES 2 1 357 ALA TYR GLN PHE PRO GLU GLY LEU ASP GLY GLN GLY GLN SEQRES 3 1 357 CYS ILE ALA ILE ILE GLU LEU GLY GLY GLY TYR ASP GLU SEQRES 4 1 357 THR SER LEU ALA GLN TYR PHE ALA SER LEU GLY VAL SER SEQRES 5 1 357 ALA PRO GLN VAL VAL SER VAL SER VAL ASP GLY ALA THR SEQRES 6 1 357 ASN GLN PRO THR GLY ASP PRO ASN GLY PRO ASP GLY GLU SEQRES 7 1 357 VAL GLU LEU ASP ILE GLU VAL ALA GLY ALA LEU ALA PRO SEQRES 8 1 357 GLY ALA LYS ILE ALA VAL TYR PHE ALA PRO ASN THR ASP SEQRES 9 1 357 ALA GLY PHE LEU ASN ALA ILE THR THR ALA VAL HIS ASP SEQRES 10 1 357 PRO THR HIS LYS PRO SER ILE VAL SER ILE SER TRP GLY SEQRES 11 1 357 GLY PRO GLU ASP SER TRP ALA PRO ALA SER ILE ALA ALA SEQRES 12 1 357 MET ASN ARG ALA PHE LEU ASP ALA ALA ALA LEU GLY VAL SEQRES 13 1 357 THR VAL LEU ALA ALA ALA GLY ASP SER GLY SER THR ASP SEQRES 14 1 357 GLY GLU GLN ASP GLY LEU TYR HIS VAL ASP PHE PRO ALA SEQRES 15 1 357 ALA SER PRO TYR VAL LEU ALA CYS GLY GLY THR ARG LEU SEQRES 16 1 357 VAL ALA SER ALA GLY ARG ILE GLU ARG GLU THR VAL TRP SEQRES 17 1 357 ASN ASP GLY PRO ASP GLY GLY SER THR GLY GLY GLY VAL SEQRES 18 1 357 SER ARG ILE PHE PRO LEU PRO SER TRP GLN GLU ARG ALA SEQRES 19 1 357 ASN VAL PRO PRO SER ALA ASN PRO GLY ALA GLY SER GLY SEQRES 20 1 357 ARG GLY VAL PRO ASP VAL ALA GLY ASN ALA ASP PRO ALA SEQRES 21 1 357 THR GLY TYR GLU VAL VAL ILE ASP GLY GLU THR THR VAL SEQRES 22 1 357 ILE GLY GLY THR SER ALA VAL ALA PRO LEU PHE ALA ALA SEQRES 23 1 357 LEU VAL ALA ARG ILE ASN GLN LYS LEU GLY LYS PRO VAL SEQRES 24 1 357 GLY TYR LEU ASN PRO THR LEU TYR GLN LEU PRO PRO GLU SEQRES 25 1 357 VAL PHE HIS ASP ILE THR GLU GLY ASN ASN ASP ILE ALA SEQRES 26 1 357 ASN ARG ALA ARG ILE TYR GLN ALA GLY PRO GLY TRP ASP SEQRES 27 1 357 PRO CYS THR GLY LEU GLY SER PRO ILE GLY ILE ARG LEU SEQRES 28 1 357 LEU GLN ALA LEU LEU PRO SEQRES 1 2 357 ALA ALA PRO THR ALA TYR THR PRO LEU ASP VAL ALA GLN SEQRES 2 2 357 ALA TYR GLN PHE PRO GLU GLY LEU ASP GLY GLN GLY GLN SEQRES 3 2 357 CYS ILE ALA ILE ILE GLU LEU GLY GLY GLY TYR ASP GLU SEQRES 4 2 357 THR SER LEU ALA GLN TYR PHE ALA SER LEU GLY VAL SER SEQRES 5 2 357 ALA PRO GLN VAL VAL SER VAL SER VAL ASP GLY ALA THR SEQRES 6 2 357 ASN GLN PRO THR GLY ASP PRO ASN GLY PRO ASP GLY GLU SEQRES 7 2 357 VAL GLU LEU ASP ILE GLU VAL ALA GLY ALA LEU ALA PRO SEQRES 8 2 357 GLY ALA LYS ILE ALA VAL TYR PHE ALA PRO ASN THR ASP SEQRES 9 2 357 ALA GLY PHE LEU ASN ALA ILE THR THR ALA VAL HIS ASP SEQRES 10 2 357 PRO THR HIS LYS PRO SER ILE VAL SER ILE SER TRP GLY SEQRES 11 2 357 GLY PRO GLU ASP SER TRP ALA PRO ALA SER ILE ALA ALA SEQRES 12 2 357 MET ASN ARG ALA PHE LEU ASP ALA ALA ALA LEU GLY VAL SEQRES 13 2 357 THR VAL LEU ALA ALA ALA GLY ASP SER GLY SER THR ASP SEQRES 14 2 357 GLY GLU GLN ASP GLY LEU TYR HIS VAL ASP PHE PRO ALA SEQRES 15 2 357 ALA SER PRO TYR VAL LEU ALA CYS GLY GLY THR ARG LEU SEQRES 16 2 357 VAL ALA SER ALA GLY ARG ILE GLU ARG GLU THR VAL TRP SEQRES 17 2 357 ASN ASP GLY PRO ASP GLY GLY SER THR GLY GLY GLY VAL SEQRES 18 2 357 SER ARG ILE PHE PRO LEU PRO SER TRP GLN GLU ARG ALA SEQRES 19 2 357 ASN VAL PRO PRO SER ALA ASN PRO GLY ALA GLY SER GLY SEQRES 20 2 357 ARG GLY VAL PRO ASP VAL ALA GLY ASN ALA ASP PRO ALA SEQRES 21 2 357 THR GLY TYR GLU VAL VAL ILE ASP GLY GLU THR THR VAL SEQRES 22 2 357 ILE GLY GLY THR SER ALA VAL ALA PRO LEU PHE ALA ALA SEQRES 23 2 357 LEU VAL ALA ARG ILE ASN GLN LYS LEU GLY LYS PRO VAL SEQRES 24 2 357 GLY TYR LEU ASN PRO THR LEU TYR GLN LEU PRO PRO GLU SEQRES 25 2 357 VAL PHE HIS ASP ILE THR GLU GLY ASN ASN ASP ILE ALA SEQRES 26 2 357 ASN ARG ALA ARG ILE TYR GLN ALA GLY PRO GLY TRP ASP SEQRES 27 2 357 PRO CYS THR GLY LEU GLY SER PRO ILE GLY ILE ARG LEU SEQRES 28 2 357 LEU GLN ALA LEU LEU PRO SEQRES 1 3 4 ACE ILE PRO PHL SEQRES 1 4 4 ACE ILE PRO PHL MODRES 1GTL PHL 3 4 PHE L-PHENYLALANINOL MODRES 1GTL PHL 4 4 PHE L-PHENYLALANINOL HET ACE 3 1 3 HET PHL 3 4 11 HET ACE 4 1 3 HET PHL 4 4 11 HET CA 11358 1 HET SO4 11359 5 HET CA 21358 1 HET SO4 21359 5 HETNAM ACE ACETYL GROUP HETNAM PHL L-PHENYLALANINOL HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN PHL BOUND FORM OF PHENYLALANINAL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 PHL 2(C9 H13 N O) FORMUL 5 CA 2(CA 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 9 HOH *211(H2 O) HELIX 1 1 THR 1 7 TYR 1 15 1 9 HELIX 2 2 ASP 1 38 LEU 1 49 1 12 HELIX 3 3 PRO 1 75 ALA 1 90 1 16 HELIX 4 4 THR 1 103 HIS 1 116 1 14 HELIX 5 5 ASP 1 134 TRP 1 136 5 3 HELIX 6 6 ALA 1 137 ALA 1 153 1 17 HELIX 7 7 ASP 1 210 GLY 1 215 1 6 HELIX 8 8 GLY 1 276 SER 1 278 5 3 HELIX 9 9 ALA 1 279 GLY 1 296 1 18 HELIX 10 10 LEU 1 302 GLN 1 308 1 7 HELIX 11 11 PRO 1 310 GLU 1 312 5 3 HELIX 12 12 ILE 1 347 LEU 1 356 1 10 HELIX 13 13 THR 2 7 TYR 2 15 1 9 HELIX 14 14 ASP 2 38 GLY 2 50 1 13 HELIX 15 15 GLY 2 74 ALA 2 90 1 17 HELIX 16 16 THR 2 103 HIS 2 116 1 14 HELIX 17 17 ASP 2 134 TRP 2 136 5 3 HELIX 18 18 ALA 2 137 LEU 2 154 1 18 HELIX 19 19 GLY 2 166 ASP 2 169 5 4 HELIX 20 20 ASP 2 210 GLY 2 215 1 6 HELIX 21 21 ASP 2 258 GLY 2 262 5 5 HELIX 22 22 GLY 2 276 SER 2 278 5 3 HELIX 23 23 ALA 2 279 GLY 2 296 1 18 HELIX 24 24 LEU 2 302 LEU 2 309 1 8 HELIX 25 25 PRO 2 310 GLU 2 312 5 3 HELIX 26 26 ILE 2 347 LEU 2 356 1 10 SHEET 1 1A 3 THR 1 4 TYR 1 6 0 SHEET 2 1A 3 THR 1 261 ILE 1 267 1 O GLY 1 262 N TYR 1 6 SHEET 3 1A 3 GLU 1 270 ILE 1 274 -1 O GLU 1 270 N ILE 1 267 SHEET 1 1B 7 GLN 1 55 SER 1 60 0 SHEET 2 1B 7 LYS 1 94 PHE 1 99 1 O ILE 1 95 N VAL 1 57 SHEET 3 1B 7 CYS 1 27 GLU 1 32 1 O ILE 1 28 N ALA 1 96 SHEET 4 1B 7 ILE 1 124 ILE 1 127 1 O ILE 1 124 N ALA 1 29 SHEET 5 1B 7 THR 1 157 ALA 1 161 1 O THR 1 157 N VAL 1 125 SHEET 6 1B 7 LEU 1 188 SER 1 198 1 O LEU 1 188 N ALA 1 160 SHEET 7 1B 7 VAL 1 253 ASN 1 256 1 O VAL 1 253 N GLY 1 191 SHEET 1 1C 7 GLN 1 55 SER 1 60 0 SHEET 2 1C 7 LYS 1 94 PHE 1 99 1 O ILE 1 95 N VAL 1 57 SHEET 3 1C 7 CYS 1 27 GLU 1 32 1 O ILE 1 28 N ALA 1 96 SHEET 4 1C 7 ILE 1 124 ILE 1 127 1 O ILE 1 124 N ALA 1 29 SHEET 5 1C 7 THR 1 157 ALA 1 161 1 O THR 1 157 N VAL 1 125 SHEET 6 1C 7 LEU 1 188 SER 1 198 1 O LEU 1 188 N ALA 1 160 SHEET 7 1C 7 ARG 1 201 VAL 1 207 -1 O ARG 1 201 N SER 1 198 SHEET 1 1D 2 GLY 1 131 PRO 1 132 0 SHEET 2 1D 2 ASP 1 179 PHE 1 180 -1 O PHE 1 180 N GLY 1 131 SHEET 1 1E 2 GLY 1 220 VAL 1 221 0 SHEET 2 1E 2 GLY 1 249 VAL 1 250 -1 O VAL 1 250 N GLY 1 220 SHEET 1 1F 2 PHE 1 314 HIS 1 315 0 SHEET 2 1F 2 SER 1 345 PRO 1 346 -1 O SER 1 345 N HIS 1 315 SHEET 1 2A 7 VAL 2 56 SER 2 60 0 SHEET 2 2A 7 LYS 2 94 PHE 2 99 1 O ILE 2 95 N VAL 2 57 SHEET 3 2A 7 CYS 2 27 GLU 2 32 1 O ILE 2 28 N ALA 2 96 SHEET 4 2A 7 ILE 2 124 ILE 2 127 1 O ILE 2 124 N ALA 2 29 SHEET 5 2A 7 THR 2 157 ALA 2 161 1 O THR 2 157 N VAL 2 125 SHEET 6 2A 7 LEU 2 188 SER 2 198 1 O LEU 2 188 N ALA 2 160 SHEET 7 2A 7 VAL 2 253 ASN 2 256 1 O VAL 2 253 N GLY 2 191 SHEET 1 2B 7 VAL 2 56 SER 2 60 0 SHEET 2 2B 7 LYS 2 94 PHE 2 99 1 O ILE 2 95 N VAL 2 57 SHEET 3 2B 7 CYS 2 27 GLU 2 32 1 O ILE 2 28 N ALA 2 96 SHEET 4 2B 7 ILE 2 124 ILE 2 127 1 O ILE 2 124 N ALA 2 29 SHEET 5 2B 7 THR 2 157 ALA 2 161 1 O THR 2 157 N VAL 2 125 SHEET 6 2B 7 LEU 2 188 SER 2 198 1 O LEU 2 188 N ALA 2 160 SHEET 7 2B 7 ARG 2 201 VAL 2 207 -1 O ARG 2 201 N SER 2 198 SHEET 1 2C 2 GLY 2 131 PRO 2 132 0 SHEET 2 2C 2 ASP 2 179 PHE 2 180 -1 O PHE 2 180 N GLY 2 131 SHEET 1 2D 2 TYR 2 263 ILE 2 267 0 SHEET 2 2D 2 GLU 2 270 ILE 2 274 -1 O GLU 2 270 N ILE 2 267 SHEET 1 2E 2 PHE 2 314 HIS 2 315 0 SHEET 2 2E 2 SER 2 345 PRO 2 346 -1 O SER 2 345 N HIS 2 315 LINK OG SER 1 278 C PHL 3 4 1555 1555 1.44 LINK OG SER 2 278 C PHL 4 4 1555 1555 1.43 LINK C ACE 3 1 N ILE 3 2 1555 1555 1.39 LINK C PRO 3 3 N PHL 3 4 1555 1555 1.38 LINK C ACE 4 1 N ILE 4 2 1555 1555 1.38 LINK C PRO 4 3 N PHL 4 4 1555 1555 1.38 LINK OD1 ASP 1 316 CA CA 11358 1555 1555 2.72 LINK O ILE 1 317 CA CA 11358 1555 1555 2.60 LINK O GLY 1 334 CA CA 11358 1555 1555 2.64 LINK O GLY 1 336 CA CA 11358 1555 1555 2.71 LINK OD2 ASP 1 338 CA CA 11358 1555 1555 2.71 LINK CA CA 11358 O HOH 12102 1555 1555 2.73 LINK OD1 ASP 2 316 CA CA 21358 1555 1555 2.72 LINK O ILE 2 317 CA CA 21358 1555 1555 2.62 LINK O GLY 2 334 CA CA 21358 1555 1555 2.73 LINK O GLY 2 336 CA CA 21358 1555 1555 2.64 LINK OD2 ASP 2 338 CA CA 21358 1555 1555 2.79 LINK CA CA 21358 O HOH 22097 1555 1555 2.63 CISPEP 1 PHE 1 180 PRO 1 181 0 0.33 CISPEP 2 VAL 1 250 PRO 1 251 0 0.23 CISPEP 3 ILE 1 330 TYR 1 331 0 0.56 CISPEP 4 PHE 2 180 PRO 2 181 0 0.19 CISPEP 5 VAL 2 250 PRO 2 251 0 -0.10 CISPEP 6 ILE 2 330 TYR 2 331 0 1.06 SITE 1 AC1 6 ASP 1 316 ILE 1 317 GLY 1 334 GLY 1 336 SITE 2 AC1 6 ASP 1 338 HOH 12102 SITE 1 AC2 5 SER 1 198 GLY 1 200 ARG 1 201 HOH 12107 SITE 2 AC2 5 SER 2 229 SITE 1 AC3 6 ASP 2 316 ILE 2 317 GLY 2 334 GLY 2 336 SITE 2 AC3 6 ASP 2 338 HOH 22097 SITE 1 AC4 6 SER 1 229 SER 2 198 ALA 2 199 GLY 2 200 SITE 2 AC4 6 ARG 2 201 HOH 22101 SITE 1 AC5 12 GLU 1 78 ASN 1 102 SER 1 128 TRP 1 129 SITE 2 AC5 12 GLY 1 130 ASP 1 164 ASP 1 179 GLY 1 275 SITE 3 AC5 12 GLY 1 276 THR 1 277 SER 1 278 HOH 32001 SITE 1 AC6 11 GLU 2 78 ASN 2 102 SER 2 128 TRP 2 129 SITE 2 AC6 11 GLY 2 130 ASP 2 164 ASP 2 179 GLY 2 276 SITE 3 AC6 11 THR 2 277 SER 2 278 HOH 42001 CRYST1 55.030 78.300 73.170 90.00 98.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018172 0.000000 0.002700 0.00000 SCALE2 0.000000 0.012771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013817 0.00000