HEADER TRANSPORT PROTEIN 28-JAN-02 1GUS TITLE MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDATE BINDING PROTEIN II; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: MOPII; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_TAXID: 1501; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSPORT PROTEIN, MOLBINDIN, MOLYBDATE BINDING, MOP EXPDTA X-RAY DIFFRACTION AUTHOR A.W.SCHUETTELKOPF,J.A.HARRISON,W.N.HUNTER REVDAT 5 13-DEC-23 1GUS 1 REMARK LINK REVDAT 4 16-MAR-10 1GUS 1 VERSN REVDAT 3 24-FEB-09 1GUS 1 VERSN REVDAT 2 03-MAY-05 1GUS 1 JRNL REVDAT 1 08-FEB-02 1GUS 0 JRNL AUTH A.W.SCHUETTELKOPF,J.A.HARRISON,D.H.BOXER,W.N.HUNTER JRNL TITL PASSIVE ACQUISITION OF LIGAND BY THE MOPII MOLBINDIN FROM JRNL TITL 2 CLOSTRIDIUM PASTEURIANUM: STRUCTURES OF APO AND JRNL TITL 3 OXYANION-BOUND FORMS JRNL REF J.BIOL.CHEM. V. 277 15013 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11836258 JRNL DOI 10.1074/JBC.M201005200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.815 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2890 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 3883 ; 2.046 ; 2.011 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1902 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1271 ; 0.230 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 509 ; 0.152 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.023 ; 0.000 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.150 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.132 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1971 ; 1.382 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3178 ; 2.367 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 919 ; 3.911 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 705 ; 7.277 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 10 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 9 5 REMARK 3 1 B 4 B 9 5 REMARK 3 1 C 4 C 9 5 REMARK 3 1 D 4 D 9 5 REMARK 3 1 E 4 E 9 5 REMARK 3 1 F 4 F 9 5 REMARK 3 2 A 11 A 11 5 REMARK 3 2 B 11 B 11 5 REMARK 3 2 C 11 C 11 5 REMARK 3 2 D 11 D 11 5 REMARK 3 2 E 11 E 11 5 REMARK 3 2 F 11 F 11 5 REMARK 3 3 A 13 A 16 5 REMARK 3 3 B 13 B 16 5 REMARK 3 3 C 13 C 16 5 REMARK 3 3 D 13 D 16 5 REMARK 3 3 E 13 E 16 5 REMARK 3 3 F 13 F 16 5 REMARK 3 4 A 19 A 26 5 REMARK 3 4 B 19 B 26 5 REMARK 3 4 C 19 C 26 5 REMARK 3 4 D 19 D 26 5 REMARK 3 4 E 19 E 26 5 REMARK 3 4 F 19 F 26 5 REMARK 3 5 A 29 A 33 5 REMARK 3 5 B 29 B 33 5 REMARK 3 5 C 29 C 33 5 REMARK 3 5 D 29 D 33 5 REMARK 3 5 E 29 E 33 5 REMARK 3 5 F 29 F 33 5 REMARK 3 6 A 35 A 44 5 REMARK 3 6 B 35 B 44 5 REMARK 3 6 C 35 C 44 5 REMARK 3 6 D 35 D 44 5 REMARK 3 6 E 35 E 44 5 REMARK 3 6 F 35 F 44 5 REMARK 3 7 A 47 A 49 5 REMARK 3 7 B 47 B 49 5 REMARK 3 7 C 47 C 49 5 REMARK 3 7 D 47 D 49 5 REMARK 3 7 E 47 E 49 5 REMARK 3 7 F 47 F 49 5 REMARK 3 8 A 52 A 59 5 REMARK 3 8 B 52 B 59 5 REMARK 3 8 C 52 C 59 5 REMARK 3 8 D 52 D 59 5 REMARK 3 8 E 52 E 59 5 REMARK 3 8 F 52 F 59 5 REMARK 3 9 A 62 A 64 5 REMARK 3 9 B 62 B 64 5 REMARK 3 9 C 62 C 64 5 REMARK 3 9 D 62 D 64 5 REMARK 3 9 E 62 E 64 5 REMARK 3 9 F 62 F 64 5 REMARK 3 10 A 66 A 67 5 REMARK 3 10 B 66 B 67 5 REMARK 3 10 C 66 C 67 5 REMARK 3 10 D 66 D 67 5 REMARK 3 10 E 66 E 67 5 REMARK 3 10 F 66 F 67 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 94 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 94 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 94 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 94 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 E (A): 94 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 F (A): 94 ; 0.08 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 143 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 143 ; 0.17 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 143 ; 0.17 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 143 ; 0.17 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 143 ; 0.18 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 F (A): 143 ; 0.17 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 103 ; 0.20 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 103 ; 0.18 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 103 ; 0.19 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 103 ; 0.18 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 103 ; 0.20 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 F (A): 103 ; 0.19 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 94 ; 0.45 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 94 ; 0.46 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 94 ; 0.45 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 94 ; 0.45 ; 0.50 REMARK 3 TIGHT THERMAL 1 E (A**2): 94 ; 0.48 ; 0.50 REMARK 3 TIGHT THERMAL 1 F (A**2): 94 ; 0.42 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 143 ; 1.10 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 143 ; 0.87 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 143 ; 1.01 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 143 ; 1.05 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 143 ; 0.97 ; 2.00 REMARK 3 MEDIUM THERMAL 1 F (A**2): 143 ; 0.91 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 103 ; 1.97 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 103 ; 1.86 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 103 ; 2.08 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 103 ; 2.12 ; 10.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 103 ; 1.97 ; 10.00 REMARK 3 LOOSE THERMAL 1 F (A**2): 103 ; 1.77 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1290009315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1GUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NACL, 10% POLYETHYLENE GLYCOL REMARK 280 6000, PH 7.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.54000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2005 LIES ON A SPECIAL POSITION. REMARK 375 HOH D2011 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2048 O HOH C 2042 2.05 REMARK 500 O HOH A 2053 O HOH B 2048 2.09 REMARK 500 O HOH A 2053 O HOH C 2042 2.13 REMARK 500 O HOH E 2022 O HOH E 2047 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 63 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E2017 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1069 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 HOH A2052 O 54.2 REMARK 620 3 HOH A2053 O 62.4 110.8 REMARK 620 4 ASP B 63 OD1 116.4 117.9 112.6 REMARK 620 5 HOH B2047 O 72.8 66.6 118.4 54.3 REMARK 620 6 HOH B2048 O 118.1 172.2 63.1 63.0 111.3 REMARK 620 7 ASP C 63 OD1 117.8 73.0 120.9 116.0 116.4 114.0 REMARK 620 8 HOH C2042 O 116.2 121.5 65.6 116.0 170.1 61.5 64.2 REMARK 620 9 HOH C2043 O 115.7 65.6 174.8 72.6 64.1 120.9 55.0 112.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1070 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2053 O REMARK 620 2 HOH B2048 O 58.6 REMARK 620 3 HOH C2042 O 60.2 58.5 REMARK 620 4 ASP D 63 OD1 64.8 119.0 110.0 REMARK 620 5 HOH D2053 O 112.1 118.4 172.2 64.5 REMARK 620 6 ASP E 63 OD1 121.1 109.4 65.7 118.2 121.4 REMARK 620 7 HOH E2054 O 120.8 172.6 114.3 64.1 68.9 64.0 REMARK 620 8 ASP F 63 OD1 108.2 63.4 116.3 119.4 64.8 115.3 121.8 REMARK 620 9 HOH F2045 O 169.5 111.2 118.3 123.1 69.3 63.0 69.6 62.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 1069 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GUG RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH TUNGSTATE REMARK 900 RELATED ID: 1GUN RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE REMARK 900 (PARTIAL) REMARK 900 RELATED ID: 1GUO RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE REMARK 900 RELATED ID: 1GUT RELATED DB: PDB REMARK 900 MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO2) DBREF 1GUS A 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUS B 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUS C 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUS D 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUS E 1 68 UNP P08854 MOP2_CLOPA 1 68 DBREF 1GUS F 1 68 UNP P08854 MOP2_CLOPA 1 68 SEQRES 1 A 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 A 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 A 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 A 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 A 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 A 68 ILE LEU ALA SEQRES 1 B 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 B 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 B 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 B 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 B 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 B 68 ILE LEU ALA SEQRES 1 C 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 C 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 C 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 C 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 C 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 C 68 ILE LEU ALA SEQRES 1 D 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 D 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 D 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 D 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 D 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 D 68 ILE LEU ALA SEQRES 1 E 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 E 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 E 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 E 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 E 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 E 68 ILE LEU ALA SEQRES 1 F 68 MET SER ILE SER ALA ARG ASN GLN LEU LYS GLY LYS VAL SEQRES 2 F 68 VAL GLY LEU LYS LYS GLY VAL VAL THR ALA GLU VAL VAL SEQRES 3 F 68 LEU GLU ILE ALA GLY GLY ASN LYS ILE THR SER ILE ILE SEQRES 4 F 68 SER LEU ASP SER VAL GLU GLU LEU GLY VAL LYS GLU GLY SEQRES 5 F 68 ALA GLU LEU THR ALA VAL VAL LYS SER THR ASP VAL MET SEQRES 6 F 68 ILE LEU ALA HET MG A1069 1 HET CL D1069 1 HET MG D1070 1 HET CL E1069 1 HET CL F1069 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 7 MG 2(MG 2+) FORMUL 8 CL 3(CL 1-) FORMUL 12 HOH *311(H2 O) HELIX 1 1 LEU A 41 LEU A 47 1 7 HELIX 2 2 LYS A 60 VAL A 64 5 5 HELIX 3 3 LEU B 41 LEU B 47 1 7 HELIX 4 4 LYS B 60 VAL B 64 5 5 HELIX 5 5 LEU C 41 LEU C 47 1 7 HELIX 6 6 LYS C 60 VAL C 64 5 5 HELIX 7 7 LEU D 41 GLY D 48 1 8 HELIX 8 8 LYS D 60 VAL D 64 5 5 HELIX 9 9 LEU E 41 GLY E 48 1 8 HELIX 10 10 LYS E 60 VAL E 64 5 5 HELIX 11 11 LEU F 41 GLY F 48 1 8 HELIX 12 12 LYS F 60 VAL F 64 5 5 SHEET 1 AA 5 LYS A 34 SER A 40 0 SHEET 2 AA 5 THR A 22 ILE A 29 -1 O ALA A 23 N ILE A 39 SHEET 3 AA 5 ASN A 7 LYS A 18 -1 O LYS A 12 N GLU A 28 SHEET 4 AA 5 GLU A 54 VAL A 59 -1 O LEU A 55 N GLY A 11 SHEET 5 AA 5 MET D 65 LEU D 67 -1 O MET D 65 N VAL A 58 SHEET 1 AB 5 MET A 65 LEU A 67 0 SHEET 2 AB 5 GLU D 54 VAL D 59 -1 O THR D 56 N LEU A 67 SHEET 3 AB 5 ASN D 7 LYS D 18 -1 O ASN D 7 N VAL D 59 SHEET 4 AB 5 THR D 22 ILE D 29 -1 O GLU D 24 N LYS D 17 SHEET 5 AB 5 LYS D 34 SER D 40 -1 O ILE D 35 N LEU D 27 SHEET 1 BA 5 LYS B 34 SER B 40 0 SHEET 2 BA 5 THR B 22 ILE B 29 -1 O ALA B 23 N ILE B 39 SHEET 3 BA 5 ASN B 7 LYS B 18 -1 O LYS B 12 N GLU B 28 SHEET 4 BA 5 GLU B 54 VAL B 59 -1 O LEU B 55 N GLY B 11 SHEET 5 BA 5 MET F 65 LEU F 67 -1 O MET F 65 N VAL B 58 SHEET 1 BB 5 MET B 65 LEU B 67 0 SHEET 2 BB 5 GLU F 54 VAL F 59 -1 O THR F 56 N LEU B 67 SHEET 3 BB 5 ASN F 7 LYS F 18 -1 O ASN F 7 N VAL F 59 SHEET 4 BB 5 THR F 22 ILE F 29 -1 O GLU F 24 N LYS F 17 SHEET 5 BB 5 LYS F 34 SER F 40 -1 O ILE F 35 N LEU F 27 SHEET 1 CA 5 LYS C 34 SER C 40 0 SHEET 2 CA 5 THR C 22 ILE C 29 -1 O ALA C 23 N ILE C 39 SHEET 3 CA 5 ASN C 7 LYS C 18 -1 O LYS C 12 N GLU C 28 SHEET 4 CA 5 GLU C 54 VAL C 59 -1 O LEU C 55 N GLY C 11 SHEET 5 CA 5 MET E 65 LEU E 67 -1 O MET E 65 N VAL C 58 SHEET 1 CB 5 MET C 65 LEU C 67 0 SHEET 2 CB 5 GLU E 54 VAL E 59 -1 O THR E 56 N LEU C 67 SHEET 3 CB 5 ASN E 7 LYS E 18 -1 O ASN E 7 N VAL E 59 SHEET 4 CB 5 THR E 22 ILE E 29 -1 O GLU E 24 N LYS E 17 SHEET 5 CB 5 LYS E 34 SER E 40 -1 O ILE E 35 N LEU E 27 LINK OD1 ASP A 63 MG MG A1069 1555 1555 2.50 LINK MG MG A1069 O HOH A2052 1555 1555 2.98 LINK MG MG A1069 O HOH A2053 1555 1555 1.97 LINK MG MG A1069 OD1 ASP B 63 1555 1555 2.47 LINK MG MG A1069 O HOH B2047 1555 1555 3.05 LINK MG MG A1069 O HOH B2048 1555 1555 2.03 LINK MG MG A1069 OD1 ASP C 63 1555 1555 2.54 LINK MG MG A1069 O HOH C2042 1555 1555 1.97 LINK MG MG A1069 O HOH C2043 1555 1555 2.86 LINK O HOH A2053 MG MG D1070 1555 1555 2.17 LINK O HOH B2048 MG MG D1070 1555 1555 2.10 LINK O HOH C2042 MG MG D1070 1555 1555 2.08 LINK OD1 ASP D 63 MG MG D1070 1555 1555 2.63 LINK MG MG D1070 O HOH D2053 1555 1555 2.91 LINK MG MG D1070 OD1 ASP E 63 1555 1555 2.62 LINK MG MG D1070 O HOH E2054 1555 1555 2.94 LINK MG MG D1070 OD1 ASP F 63 1555 1555 2.67 LINK MG MG D1070 O HOH F2045 1555 1555 2.97 SITE 1 AC1 10 ASP A 63 HOH A2052 HOH A2053 ASP B 63 SITE 2 AC1 10 HOH B2047 HOH B2048 ASP C 63 HOH C2042 SITE 3 AC1 10 HOH C2043 MG D1070 SITE 1 AC2 6 HOH B2033 SER D 4 ALA D 5 ARG D 6 SITE 2 AC2 6 SER D 61 HOH D2052 SITE 1 AC3 10 MG A1069 HOH A2053 HOH B2048 HOH C2042 SITE 2 AC3 10 ASP D 63 HOH D2053 ASP E 63 HOH E2054 SITE 3 AC3 10 ASP F 63 HOH F2045 SITE 1 AC4 6 HOH A2034 SER E 4 ALA E 5 ARG E 6 SITE 2 AC4 6 SER E 61 HOH E2055 SITE 1 AC5 6 HOH C2026 SER F 4 ALA F 5 ARG F 6 SITE 2 AC5 6 SER F 61 HOH F2046 CRYST1 79.080 82.400 56.820 90.00 93.23 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012645 0.000000 0.000714 0.00000 SCALE2 0.000000 0.012136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017627 0.00000 MTRIX1 1 0.460322 0.519161 0.720122 -0.15100 1 MTRIX2 1 -0.518621 -0.501095 0.692774 81.65000 1 MTRIX3 1 0.720511 -0.692369 0.038583 0.08000 1 MTRIX1 2 0.461251 -0.520460 0.718588 -42.44200 1 MTRIX2 2 0.518640 -0.498963 -0.694297 40.65700 1 MTRIX3 2 0.719903 0.692934 0.039784 56.73600 1 MTRIX1 3 -0.997704 -0.067595 -0.004112 37.75700 1 MTRIX2 3 -0.067575 0.989760 0.125729 -3.81900 1 MTRIX3 3 -0.004429 0.125719 -0.992056 79.52100 1 MTRIX1 4 -0.496691 0.549730 -0.671635 30.32400 1 MTRIX2 4 0.572531 -0.374070 -0.729575 78.10200 1 MTRIX3 4 -0.652308 -0.746906 -0.128940 89.63200 1 MTRIX1 5 -0.427906 -0.480760 -0.765354 76.52300 1 MTRIX2 5 -0.453600 -0.618201 0.641931 48.06900 1 MTRIX3 5 -0.781757 0.621850 0.046459 27.70400 1