HEADER CARBOHYDRATE BINDING 07-FEB-02 1GV9 TITLE P58/ERGIC-53 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P58/ERGIC-53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE RECOGNITION DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116 KEYWDS LECTIN, CARBOHYDRATE BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.M.VELLOSO,K.SVENSSON,G.SCHNEIDER,R.F.PETTERSSON,Y.LINDQVIST REVDAT 6 17-JAN-18 1GV9 1 REMARK REVDAT 5 13-JUL-11 1GV9 1 VERSN REVDAT 4 24-FEB-09 1GV9 1 VERSN REVDAT 3 24-OCT-03 1GV9 1 REMARK REVDAT 2 14-OCT-03 1GV9 1 JRNL REVDAT 1 28-FEB-02 1GV9 0 JRNL AUTH L.M.VELLOSO,K.SVENSSON,G.SCHNEIDER,R.F.PETTERSSON, JRNL AUTH 2 Y.LINDQVIST JRNL TITL CRYSTAL STRUCTURE OF THE CARBOHYDRATE RECOGNITION DOMAIN OF JRNL TITL 2 P58/ERGIC-53, A PROTEIN INVOLVED IN GLYCOPROTEIN EXPORT FROM JRNL TITL 3 THE ENDOPLASMIC RETICULUM. JRNL REF J.BIOL.CHEM. V. 277 15979 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11850423 JRNL DOI 10.1074/JBC.M112098200 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.402 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1810 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1537 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 2458 ; 1.494 ; 1.914 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 3576 ; 0.676 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2055 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 394 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 314 ; 0.239 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1480 ; 0.214 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.210 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.102 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.942 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.459 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.128 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 0.804 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 1.518 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 707 ; 1.890 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 689 ; 3.086 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0485 23.6307 18.2731 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0099 REMARK 3 T33: 0.0068 T12: 0.0030 REMARK 3 T13: -0.0008 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3039 L22: 0.3021 REMARK 3 L33: 0.1625 L12: -0.0220 REMARK 3 L13: -0.0392 L23: 0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.0032 S13: -0.0201 REMARK 3 S21: -0.0370 S22: -0.0263 S23: 0.0064 REMARK 3 S31: 0.0087 S32: 0.0116 S33: 0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1GV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1290009381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.52150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.70350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.83600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.52150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.70350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.83600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.52150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.70350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.83600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.52150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.70350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 PHE A 27 REMARK 465 VAL A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 GLY A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 ASP A 36 REMARK 465 ALA A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 PRO A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 THR A 45 REMARK 465 GLN A 46 REMARK 465 ALA A 47 REMARK 465 GLU A 48 REMARK 465 LEU A 49 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 ASN A 169 REMARK 465 PRO A 278 REMARK 465 GLY A 279 REMARK 465 LYS A 280 REMARK 465 GLU A 281 REMARK 465 PRO A 282 REMARK 465 PRO A 283 REMARK 465 THR A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 199 CD OE1 NE2 REMARK 470 ARG A 200 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 277 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 74 -3.19 79.22 REMARK 500 PRO A 171 98.09 25.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 170 PRO A 171 -138.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 170 -10.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1279 DBREF 1GV9 A 25 284 UNP Q62902 Q62902 25 284 SEQRES 1 A 260 SER GLN PHE VAL GLY SER ASP GLY MET GLY GLY ASP ALA SEQRES 2 A 260 ALA ALA PRO GLY ALA ALA GLY THR GLN ALA GLU LEU PRO SEQRES 3 A 260 HIS ARG ARG PHE GLU TYR LYS TYR SER PHE LYS GLY PRO SEQRES 4 A 260 HIS LEU VAL GLN SER ASP GLY THR VAL PRO PHE TRP ALA SEQRES 5 A 260 HIS ALA GLY ASN ALA ILE PRO SER ALA ASP GLN ILE ARG SEQRES 6 A 260 ILE ALA PRO SER LEU LYS SER GLN ARG GLY SER VAL TRP SEQRES 7 A 260 THR LYS THR LYS ALA ALA PHE GLU ASN TRP GLU VAL GLU SEQRES 8 A 260 VAL THR PHE ARG VAL THR GLY ARG GLY ARG ILE GLY ALA SEQRES 9 A 260 ASP GLY LEU ALA ILE TRP TYR THR GLU ASN GLN GLY LEU SEQRES 10 A 260 ASP GLY PRO VAL PHE GLY SER ALA ASP MET TRP ASN GLY SEQRES 11 A 260 VAL GLY ILE PHE PHE ASP SER PHE ASP ASN ASP GLY LYS SEQRES 12 A 260 LYS ASN ASN PRO ALA ILE VAL VAL VAL GLY ASN ASN GLY SEQRES 13 A 260 GLN ILE ASN TYR ASP HIS GLN ASN ASP GLY ALA THR GLN SEQRES 14 A 260 ALA LEU ALA SER CYS GLN ARG ASP PHE ARG ASN LYS PRO SEQRES 15 A 260 TYR PRO VAL ARG ALA LYS ILE THR TYR TYR GLN LYS THR SEQRES 16 A 260 LEU THR VAL MET ILE ASN ASN GLY PHE THR PRO ASP LYS SEQRES 17 A 260 ASN ASP TYR GLU PHE CYS ALA LYS VAL GLU ASN MET VAL SEQRES 18 A 260 ILE PRO THR GLN GLY HIS PHE GLY ILE SER ALA ALA THR SEQRES 19 A 260 GLY GLY LEU ALA ASP ASP HIS ASP VAL LEU SER PHE LEU SEQRES 20 A 260 THR PHE GLN LEU THR GLU PRO GLY LYS GLU PRO PRO THR HET SO4 A1278 5 HET SO4 A1279 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *191(H2 O) HELIX 1 1 TYR A 56 SER A 59 5 4 HELIX 2 2 ASP A 185 ALA A 194 1 10 SHEET 1 AA 3 HIS A 51 PHE A 54 0 SHEET 2 AA 3 ASP A 264 THR A 276 -1 O GLN A 274 N ARG A 53 SHEET 3 AA 3 PHE A 60 LYS A 61 -1 O PHE A 60 N PHE A 270 SHEET 1 AB 4 HIS A 51 PHE A 54 0 SHEET 2 AB 4 ASP A 264 THR A 276 -1 O GLN A 274 N ARG A 53 SHEET 3 AB 4 ILE A 88 ALA A 91 -1 O ILE A 88 N VAL A 267 SHEET 4 AB 4 ILE A 82 PRO A 83 -1 O ILE A 82 N ARG A 89 SHEET 1 AC 7 TRP A 75 GLY A 79 0 SHEET 2 AC 7 ARG A 98 THR A 103 -1 O SER A 100 N ALA A 78 SHEET 3 AC 7 HIS A 251 ALA A 257 -1 O PHE A 252 N THR A 103 SHEET 4 AC 7 GLY A 130 THR A 136 -1 O GLY A 130 N ALA A 257 SHEET 5 AC 7 ASN A 153 ASP A 160 -1 O VAL A 155 N TYR A 135 SHEET 6 AC 7 ALA A 172 ASN A 179 -1 O ALA A 172 N ASP A 160 SHEET 7 AC 7 ALA A 196 CYS A 198 -1 O ALA A 196 N VAL A 175 SSBOND 1 CYS A 198 CYS A 238 1555 1555 2.04 CISPEP 1 GLY A 62 PRO A 63 0 -2.29 CISPEP 2 ALA A 128 ASP A 129 0 -1.96 SITE 1 AC1 4 ARG A 200 ASP A 201 LYS A 205 ASN A 226 SITE 1 AC2 7 ASN A 80 SER A 84 ALA A 85 GLN A 97 SITE 2 AC2 7 HOH A2046 HOH A2052 HOH A2065 CRYST1 49.043 85.407 127.672 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007833 0.00000