HEADER DNA-BINDING(VIRAL) 15-DEC-93 1GVA OBSLTE 15-OCT-95 1GVA 2GVA TITLE THE SOLUTION STRUCTURE OF THE TYR 41-> HIS MUTANT OF THE TITLE 2 SINGLE-STRANDED DNA-BINDING PROTEIN ENCODED BY GENE V OF TITLE 3 THE FILAMENTOUS BACTERIOPHAGE M13 COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS DNA-BINDING(VIRAL) EXPDTA NMR, 20 STRUCTURES AUTHOR P.J.M.FOLKERS,M.NILGES,R.H.A.FOLMER,R.N.H.KONINGS, AUTHOR 2 C.W.HILBERS REVDAT 1 30-APR-94 1GVA 0 JRNL AUTH P.J.M.FOLKERS,M.NILGES,R.H.A.FOLMER,R.N.H.KONINGS, JRNL AUTH 2 C.W.HILBERS JRNL TITL THE SOLUTION STRUCTURE OF THE TYR 41-> HIS MUTANT JRNL TITL 2 OF THE SINGLE-STRANDED DNA-BINDING PROTEIN ENCODED JRNL TITL 3 BY GENE V OF THE FILAMENTOUS BACTERIOPHAGE M13 JRNL REF J.MOL.BIOL. V. 236 229 1994 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.M.FOLKERS,J.P.M.VAN DUYNHOVEN, REMARK 1 AUTH 2 H.T.M.VAN LIESHOUT,B.J.M.HARMSEN,J.H.VAN BOOM, REMARK 1 AUTH 3 G.I.TESSER,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL EXPLORING THE DNA BINDING DOMAIN OF GENE V PROTEIN REMARK 1 TITL 2 ENCODED BY BACTERIOPHAGE M13 WITH THE AID OF REMARK 1 TITL 3 SPIN-LABELED OLIGONUCLEOTIDES IN COMBINATION WITH REMARK 1 TITL 4 H-NMR REMARK 1 REF BIOCHEMISTRY V. 32 9407 1993 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.J.M.FOLKERS,J.P.M.VAN DUYNHOVEN,A.J.JONKER, REMARK 1 AUTH 2 B.J.M.HARMSEN,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL SEQUENCE-SPECIFIC H-NMR ASSIGNMENT AND SECONDARY REMARK 1 TITL 2 STRUCTURE OF THE TYR 41-> HIS MUTANT OF THE REMARK 1 TITL 3 SINGLE-STRANDED DNA BINDING PROTEIN, GENE V REMARK 1 TITL 4 PROTEIN, ENCODED BY THE FILAMENTOUS BACTERIOPHAGE REMARK 1 TITL 5 M13 REMARK 1 REF EUR.J.BIOCHEM. V. 202 349 1991 REMARK 1 REFN ASTM EJBCAI IX ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.J.M.FOLKERS,A.P.M.STASSEN,J.P.M.VAN DUYNHOVEN, REMARK 1 AUTH 2 B.J.M.HARMSEN,R.N.H.KONINGS,C.W.HILBERS REMARK 1 TITL CHARACTERIZATION OF WILD-TYPE AND MUTANT M13 GENE REMARK 1 TITL 2 V PROTEINS BY MEANS OF H-NMR REMARK 1 REF EUR.J.BIOCHEM. V. 200 139 1991 REMARK 1 REFN ASTM EJBCAI IX ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GVA COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1GVA THE GENE V PROTEIN IS A SYMMETRICAL HOMODIMER. DURING REMARK 5 THE 1GVA SIMULATED ANNEALING RUNS BOTH MONOMERS WERE REMARK 5 CALCULATED 1GVA SEPARATELY USING PROTOCOLS AS DESCRIBED BY REMARK 5 NILGES (PROTEINS 1GVA 17, 297-309, 1993). 1GVA REMARK 6 REMARK 6 1GVA THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 6 1GVA ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS REMARK 6 BELOW, 1GVA TWO SHEETS, S1A AND S1B ARE DEFINED. STRANDS 1, REMARK 6 2, 4, 5 1GVA OF 1A AND 1B ARE IDENTICAL. 1GVA REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 80 157.22 85.62 REMARK 500 1 ARG B 80 157.27 85.48 REMARK 500 2 ARG A 80 151.84 104.68 REMARK 500 2 ARG B 80 151.62 104.78 REMARK 500 4 GLU A 51 -93.28 45.90 REMARK 500 4 LEU A 60 127.30 63.54 REMARK 500 4 ARG A 80 162.24 93.83 REMARK 500 4 GLU B 51 -93.32 45.82 REMARK 500 4 LEU B 60 127.32 63.60 REMARK 500 4 ARG B 80 162.20 93.70 REMARK 500 5 LEU A 60 126.53 64.92 REMARK 500 5 ARG A 80 161.27 86.82 REMARK 500 5 LEU B 60 126.50 64.99 REMARK 500 5 ARG B 80 161.22 87.07 REMARK 500 6 ASP A 36 148.03 88.10 REMARK 500 6 LEU A 60 125.46 64.66 REMARK 500 6 ARG A 80 160.97 92.82 REMARK 500 6 ASP B 36 147.89 88.17 REMARK 500 6 LEU B 60 125.60 64.59 REMARK 500 6 ARG B 80 160.97 92.77 REMARK 500 7 GLU A 51 -88.74 59.33 REMARK 500 7 LEU A 60 120.67 69.23 REMARK 500 7 GLU B 51 -88.70 59.22 REMARK 500 7 LEU B 60 120.79 69.30 REMARK 500 8 LEU A 60 124.73 63.58 REMARK 500 8 LEU B 60 124.59 63.57 REMARK 500 9 ASP A 36 137.23 94.58 REMARK 500 9 HIS A 41 161.95 53.78 REMARK 500 9 LEU A 60 124.07 66.61 REMARK 500 9 ARG A 80 159.05 85.48 REMARK 500 9 ASP B 36 137.11 94.47 REMARK 500 9 HIS B 41 161.92 53.87 REMARK 500 9 LEU B 60 123.98 66.64 REMARK 500 9 ARG B 80 159.18 85.36 REMARK 500 10 LEU A 60 125.74 65.39 REMARK 500 10 LEU B 60 125.75 65.37 REMARK 500 11 ARG A 80 150.24 101.19 REMARK 500 11 ARG B 80 150.19 101.33 REMARK 500 12 ASP A 36 138.36 68.33 REMARK 500 12 ARG A 80 155.26 94.45 REMARK 500 12 ASP B 36 138.48 68.31 REMARK 500 12 ARG B 80 155.15 94.33 REMARK 500 13 LYS A 24 154.42 83.07 REMARK 500 13 LEU A 60 126.55 64.88 REMARK 500 13 ARG A 80 154.77 97.13 REMARK 500 13 LYS B 24 154.44 83.09 REMARK 500 13 LEU B 60 126.71 64.76 REMARK 500 13 ARG B 80 154.77 97.12 REMARK 500 14 GLU A 51 -89.97 52.98 REMARK 500 14 GLU B 51 -90.10 53.25 REMARK 500 15 GLU A 51 156.50 56.78 REMARK 500 15 ARG A 80 153.81 127.74 REMARK 500 15 GLU B 51 156.29 57.21 REMARK 500 15 ARG B 80 153.83 127.77 REMARK 500 16 HIS A 41 155.95 84.64 REMARK 500 16 HIS B 41 155.93 84.52 REMARK 500 17 HIS A 41 155.95 84.64 REMARK 500 17 HIS B 41 155.93 84.52 REMARK 500 18 GLU A 51 -90.79 38.88 REMARK 500 18 LEU A 60 121.40 71.68 REMARK 500 18 ARG A 80 157.03 90.91 REMARK 500 18 GLU B 51 -90.70 38.83 REMARK 500 18 LEU B 60 121.52 71.65 REMARK 500 18 ARG B 80 156.83 91.10 REMARK 500 20 HIS A 41 -176.29 102.59 REMARK 500 20 HIS B 41 -176.33 102.57 SEQRES 1 A 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 A 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 A 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 A 87 GLU HIS PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 A 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 A 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 A 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS SEQRES 1 B 87 MET ILE LYS VAL GLU ILE LYS PRO SER GLN ALA GLN PHE SEQRES 2 B 87 THR THR ARG SER GLY VAL SER ARG GLN GLY LYS PRO TYR SEQRES 3 B 87 SER LEU ASN GLU GLN LEU CYS TYR VAL ASP LEU GLY ASN SEQRES 4 B 87 GLU HIS PRO VAL LEU VAL LYS ILE THR LEU ASP GLU GLY SEQRES 5 B 87 GLN PRO ALA TYR ALA PRO GLY LEU TYR THR VAL HIS LEU SEQRES 6 B 87 SER SER PHE LYS VAL GLY GLN PHE GLY SER LEU MET ILE SEQRES 7 B 87 ASP ARG LEU ARG LEU VAL PRO ALA LYS HELIX 1 H1A LYS A 7 SER A 9 5 3 HELIX 2 H2A HIS A 64 SER A 67 5 4 HELIX 3 H1B LYS B 7 SER B 9 5 3 HELIX 4 H2B HIS B 64 SER B 67 5 4 SHEET 1 S1A 5 PRO A 42 THR A 48 0 SHEET 2 S1A 5 LYS A 24 ASP A 36 -1 O VAL A 35 N VAL A 43 SHEET 3 S1A 5 LYS A 3 ILE A 6 -1 O GLU A 5 N TYR A 34 SHEET 4 S1A 5 GLY A 59 HIS A 64 -1 O TYR A 61 N VAL A 4 SHEET 5 S1A 5 ARG A 82 ALA A 86 -1 O ARG A 82 N HIS A 64 SHEET 1 S1B 5 PHE A 13 SER A 20 0 SHEET 2 S1B 5 LYS A 24 ASP A 36 -1 O TYR A 26 N GLY A 18 SHEET 3 S1B 5 LYS A 3 ILE A 6 -1 O GLU A 5 N TYR A 34 SHEET 4 S1B 5 GLY A 59 HIS A 64 -1 O TYR A 61 N VAL A 4 SHEET 5 S1B 5 ARG A 82 ALA A 86 -1 O ARG A 82 N HIS A 64 SHEET 1 S2A 2 PHE A 68 GLY A 71 0 SHEET 2 S2A 2 SER A 75 ILE A 78 -1 O MET A 77 N LYS A 69 SHEET 1 S1C 5 PRO B 42 THR B 48 0 SHEET 2 S1C 5 LYS B 24 ASP B 36 -1 O VAL B 35 N VAL B 43 SHEET 3 S1C 5 LYS B 3 ILE B 6 -1 O GLU B 5 N TYR B 34 SHEET 4 S1C 5 GLY B 59 HIS B 64 -1 O TYR B 61 N VAL B 4 SHEET 5 S1C 5 ARG B 82 ALA B 86 -1 O ARG B 82 N HIS B 64 SHEET 1 S1D 5 PHE B 13 SER B 20 0 SHEET 2 S1D 5 LYS B 24 ASP B 36 -1 O TYR B 26 N GLY B 18 SHEET 3 S1D 5 LYS B 3 ILE B 6 -1 O GLU B 5 N TYR B 34 SHEET 4 S1D 5 GLY B 59 HIS B 64 -1 O TYR B 61 N VAL B 4 SHEET 5 S1D 5 ARG B 82 ALA B 86 -1 O ARG B 82 N HIS B 64 SHEET 1 S2B 2 PHE B 68 GLY B 71 0 SHEET 2 S2B 2 SER B 75 ILE B 78 -1 O MET B 77 N LYS B 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1