HEADER OXIDOREDUCTASE 12-FEB-02 1GVG TITLE CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE WITH NITRIC OXIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLAVAMINATE SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLAVAMINIC ACID SYNTHASE 1, CAS1; COMPND 5 EC: 1.14.11.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS; SOURCE 3 ORGANISM_TAXID: 1901; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS OXIDOREDUCTASE, LYASE, OXYGENASE, TRIFUNCTIONAL ENZYME, CLAVAMINATE KEYWDS 2 SYNTHASE 1, JELLY ROLL, NITRIC OXIDE EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.ZHANG,J.REN,C.H.MCKINNON,I.J.CLIFTON,K.HARLOS,C.J.SCHOFIELD REVDAT 6 13-DEC-23 1GVG 1 REMARK LINK REVDAT 5 23-MAY-18 1GVG 1 TITLE JRNL REVDAT 4 05-JUL-17 1GVG 1 REMARK REVDAT 3 15-DEC-09 1GVG 1 VERSN REVDAT 2 24-FEB-09 1GVG 1 VERSN REVDAT 1 07-FEB-03 1GVG 0 JRNL AUTH Z.H.ZHANG,J.REN,K.HARLOS,C.H.MCKINNON,I.J.CLIFTON, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF A CLAVAMINATE SYNTHASE-FE(II) JRNL TITL 2 -2-OXOGLUTARATE-SUBSTRATE-NO COMPLEX: EVIDENCE FOR METAL JRNL TITL 3 CENTERED REARRANGEMENTS JRNL REF FEBS LETT. V. 517 7 2002 JRNL REFN ISSN 0014-5793 JRNL PMID 12062399 JRNL DOI 10.1016/S0014-5793(02)02520-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.H.ZHANG,J.REN,D.K.STAMMERS,J.E.BALDWIN,K.HARLOS, REMARK 1 AUTH 2 C.J.SCHOFIELD REMARK 1 TITL STRUCTURAL ORIGINS OF THE SELECTIVITY OF THE TRIFUNCTIONAL REMARK 1 TITL 2 OXYGENASE CLAVAMINIC ACID SYNTHASE REMARK 1 REF NAT.STRUCT.BIOL. V. 7 127 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 10655615 REMARK 1 DOI 10.1038/72398 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 46333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2325 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96800 REMARK 3 B22 (A**2) : -0.58600 REMARK 3 B33 (A**2) : 1.55400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 46.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PCX-NO.PAR REMARK 3 PARAMETER FILE 2 : AKG.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PCX-NO.TOP REMARK 3 TOPOLOGY FILE 2 : AKG.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1290009415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46381 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.46 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1DS0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 207 REMARK 465 GLY A 208 REMARK 465 VAL A 209 REMARK 465 ASP A 210 REMARK 465 ASP A 211 REMARK 465 PRO A 212 REMARK 465 GLY A 213 REMARK 465 ALA A 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2313 O HOH A 2316 0.52 REMARK 500 O HOH A 2150 O HOH A 2151 0.64 REMARK 500 O HOH A 2009 O HOH A 2021 1.19 REMARK 500 O HOH A 2178 O HOH A 2181 1.27 REMARK 500 O HOH A 2361 O HOH A 2362 1.30 REMARK 500 O HOH A 2084 O HOH A 2085 1.36 REMARK 500 O HOH A 2115 O HOH A 2116 1.41 REMARK 500 O HOH A 2357 O HOH A 2358 1.42 REMARK 500 O HOH A 2244 O HOH A 2246 1.43 REMARK 500 O HOH A 2123 O HOH A 2128 1.53 REMARK 500 O HOH A 2244 O HOH A 2249 1.70 REMARK 500 NH1 ARG A 287 O HOH A 2340 1.87 REMARK 500 O HOH A 2245 O HOH A 2246 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2132 O HOH A 2317 2455 0.44 REMARK 500 O HOH A 2143 O HOH A 2351 3555 0.59 REMARK 500 O HOH A 2044 O HOH A 2326 2455 0.72 REMARK 500 O HOH A 2040 O HOH A 2320 2455 0.75 REMARK 500 O HOH A 2138 O HOH A 2354 3555 0.96 REMARK 500 O HOH A 2065 O HOH A 2245 2455 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 78.12 -159.29 REMARK 500 LEU A 132 57.81 -105.64 REMARK 500 SER A 137 -70.57 -144.37 REMARK 500 ASP A 227 63.03 -157.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2115 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 325 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 GLU A 146 OE1 89.3 REMARK 620 3 HIS A 279 NE2 85.3 93.4 REMARK 620 4 AKG A 326 O1 92.6 106.5 160.0 REMARK 620 5 AKG A 326 O5 92.0 177.0 84.0 76.2 REMARK 620 6 HOA A 332 N 171.8 98.9 93.0 86.2 79.8 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HOA A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCX A 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DRT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2- REMARK 900 OXOGLUTARATE AND PROCLAVAMINIC ACID REMARK 900 RELATED ID: 1DRY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2- REMARK 900 OXOGLUTARATE AND N -ALPHA-L-ACETYL ARGININE REMARK 900 RELATED ID: 1DS0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE REMARK 900 RELATED ID: 1DS1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II) REMARK 900 AND 2- OXOGLUTARATE DBREF 1GVG A 1 324 UNP Q05581 CAS1_STRCL 1 324 SEQRES 1 A 324 MET THR SER VAL ASP CYS THR ALA TYR GLY PRO GLU LEU SEQRES 2 A 324 ARG ALA LEU ALA ALA ARG LEU PRO ARG THR PRO ARG ALA SEQRES 3 A 324 ASP LEU TYR ALA PHE LEU ASP ALA ALA HIS THR ALA ALA SEQRES 4 A 324 ALA SER LEU PRO GLY ALA LEU ALA THR ALA LEU ASP THR SEQRES 5 A 324 PHE ASN ALA GLU GLY SER GLU ASP GLY HIS LEU LEU LEU SEQRES 6 A 324 ARG GLY LEU PRO VAL GLU ALA ASP ALA ASP LEU PRO THR SEQRES 7 A 324 THR PRO SER SER THR PRO ALA PRO GLU ASP ARG SER LEU SEQRES 8 A 324 LEU THR MET GLU ALA MET LEU GLY LEU VAL GLY ARG ARG SEQRES 9 A 324 LEU GLY LEU HIS THR GLY TYR ARG GLU LEU ARG SER GLY SEQRES 10 A 324 THR VAL TYR HIS ASP VAL TYR PRO SER PRO GLY ALA HIS SEQRES 11 A 324 HIS LEU SER SER GLU THR SER GLU THR LEU LEU GLU PHE SEQRES 12 A 324 HIS THR GLU MET ALA TYR HIS ARG LEU GLN PRO ASN TYR SEQRES 13 A 324 VAL MET LEU ALA CYS SER ARG ALA ASP HIS GLU ARG THR SEQRES 14 A 324 ALA ALA THR LEU VAL ALA SER VAL ARG LYS ALA LEU PRO SEQRES 15 A 324 LEU LEU ASP GLU ARG THR ARG ALA ARG LEU LEU ASP ARG SEQRES 16 A 324 ARG MET PRO CYS CYS VAL ASP VAL ALA PHE ARG GLY GLY SEQRES 17 A 324 VAL ASP ASP PRO GLY ALA ILE ALA GLN VAL LYS PRO LEU SEQRES 18 A 324 TYR GLY ASP ALA ASP ASP PRO PHE LEU GLY TYR ASP ARG SEQRES 19 A 324 GLU LEU LEU ALA PRO GLU ASP PRO ALA ASP LYS GLU ALA SEQRES 20 A 324 VAL ALA ALA LEU SER LYS ALA LEU ASP GLU VAL THR GLU SEQRES 21 A 324 ALA VAL TYR LEU GLU PRO GLY ASP LEU LEU ILE VAL ASP SEQRES 22 A 324 ASN PHE ARG THR THR HIS ALA ARG THR PRO PHE SER PRO SEQRES 23 A 324 ARG TRP ASP GLY LYS ASP ARG TRP LEU HIS ARG VAL TYR SEQRES 24 A 324 ILE ARG THR ASP ARG ASN GLY GLN LEU SER GLY GLY GLU SEQRES 25 A 324 ARG ALA GLY ASP VAL VAL ALA PHE THR PRO ARG GLY HET FE A 325 1 HET AKG A 326 10 HET SO4 A 328 5 HET SO4 A 329 5 HET SO4 A 330 5 HET PCX A 331 16 HET HOA A 332 2 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM SO4 SULFATE ION HETNAM PCX DEOXYGUANIDINOPROCLAVAMINIC ACID HETNAM HOA HYDROXYAMINE FORMUL 2 FE FE 3+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 PCX C9 H16 N4 O3 FORMUL 8 HOA H3 N O FORMUL 9 HOH *392(H2 O) HELIX 1 1 TYR A 9 LEU A 20 1 12 HELIX 2 2 THR A 23 ALA A 26 5 4 HELIX 3 3 ASP A 27 ALA A 40 1 14 HELIX 4 4 PRO A 43 GLY A 57 1 15 HELIX 5 5 ALA A 72 LEU A 76 5 5 HELIX 6 6 LEU A 92 GLY A 106 1 15 HELIX 7 7 LEU A 114 THR A 118 5 5 HELIX 8 8 VAL A 177 LEU A 181 1 5 HELIX 9 9 PRO A 182 LEU A 184 5 3 HELIX 10 10 ASP A 185 LEU A 193 1 9 HELIX 11 11 ASP A 202 ARG A 206 5 5 HELIX 12 12 ASP A 241 VAL A 258 1 18 SHEET 1 AA 7 SER A 3 ASP A 5 0 SHEET 2 AA 7 HIS A 62 ARG A 66 1 O LEU A 64 N VAL A 4 SHEET 3 AA 7 LEU A 269 ASP A 273 -1 O LEU A 269 N LEU A 65 SHEET 4 AA 7 TYR A 156 ARG A 163 -1 O VAL A 157 N VAL A 272 SHEET 5 AA 7 TRP A 294 ARG A 301 -1 O TRP A 294 N SER A 162 SHEET 6 AA 7 LEU A 107 TYR A 111 -1 O LEU A 107 N ARG A 301 SHEET 7 AA 7 ASP A 316 VAL A 318 1 O ASP A 316 N GLY A 110 SHEET 1 AB 6 SER A 3 ASP A 5 0 SHEET 2 AB 6 HIS A 62 ARG A 66 1 O LEU A 64 N VAL A 4 SHEET 3 AB 6 LEU A 269 ASP A 273 -1 O LEU A 269 N LEU A 65 SHEET 4 AB 6 TYR A 156 ARG A 163 -1 O VAL A 157 N VAL A 272 SHEET 5 AB 6 TRP A 294 ARG A 301 -1 O TRP A 294 N SER A 162 SHEET 6 AB 6 HIS A 121 VAL A 123 -1 O HIS A 121 N ARG A 297 SHEET 1 AC 4 LEU A 141 HIS A 144 0 SHEET 2 AC 4 THR A 277 ARG A 281 -1 O HIS A 279 N HIS A 144 SHEET 3 AC 4 THR A 172 SER A 176 -1 O LEU A 173 N ALA A 280 SHEET 4 AC 4 GLU A 260 VAL A 262 -1 O GLU A 260 N VAL A 174 SHEET 1 AD 2 MET A 197 CYS A 199 0 SHEET 2 AD 2 ALA A 216 VAL A 218 -1 O ALA A 216 N CYS A 199 SHEET 1 AE 2 LEU A 221 TYR A 222 0 SHEET 2 AE 2 PHE A 229 LEU A 230 -1 O PHE A 229 N TYR A 222 LINK NE2 HIS A 144 FE FE A 325 1555 1555 2.23 LINK OE1 GLU A 146 FE FE A 325 1555 1555 2.06 LINK NE2 HIS A 279 FE FE A 325 1555 1555 2.10 LINK FE FE A 325 O1 AKG A 326 1555 1555 2.01 LINK FE FE A 325 O5 AKG A 326 1555 1555 2.27 LINK FE FE A 325 N HOA A 332 1555 1555 1.79 CISPEP 1 THR A 83 PRO A 84 0 -0.20 SITE 1 AC1 5 HIS A 144 GLU A 146 HIS A 279 AKG A 326 SITE 2 AC1 5 HOA A 332 SITE 1 AC2 5 PRO A 21 ARG A 22 HOH A2049 HOH A2385 SITE 2 AC2 5 HOH A2386 SITE 1 AC3 5 SER A 58 GLU A 59 HOH A2387 HOH A2388 SITE 2 AC3 5 HOH A2389 SITE 1 AC4 6 ARG A 151 ARG A 196 ARG A 323 GLY A 324 SITE 2 AC4 6 HOH A2227 HOH A2390 SITE 1 AC5 6 GLU A 146 LEU A 159 HIS A 279 ARG A 297 SITE 2 AC5 6 FE A 325 AKG A 326 SITE 1 AC6 13 SER A 134 LEU A 141 HIS A 144 GLU A 146 SITE 2 AC6 13 THR A 172 HIS A 279 ARG A 281 ARG A 293 SITE 3 AC6 13 ARG A 297 FE A 325 PCX A 331 HOA A 332 SITE 4 AC6 13 HOH A2384 SITE 1 AC7 16 LEU A 114 LEU A 132 SER A 133 SER A 134 SITE 2 AC7 16 HIS A 144 GLU A 146 ASP A 202 ASP A 233 SITE 3 AC7 16 LEU A 236 ARG A 297 AKG A 326 HOH A2189 SITE 4 AC7 16 HOH A2208 HOH A2219 HOH A2391 HOH A2392 CRYST1 64.270 69.520 70.190 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014247 0.00000