HEADER ARABINANASE 23-APR-02 1GYD TITLE STRUCTURE OF CELLVIBRIO CELLULOSA ALPHA-L-ARABINANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA-L-ARABINANASE, ABN A, ENDO-1,5-ALPHA-L-ARABINANASE A; COMPND 5 EC: 3.2.1.99; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO CELLULOSA; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PVM1 KEYWDS ARABINANASE, HYDROLASE, PROPELLER, CATALYSIS, CELLVIBRIO, PSEUDOMONAS EXPDTA X-RAY DIFFRACTION AUTHOR D.NURIZZO,J.P.TURKENBURG,S.J.CHARNOCK,S.M.ROBERTS,E.J.DODSON, AUTHOR 2 V.A.MCKIE,E.J.TAYLOR,H.J.GILBERT,G.J.DAVIES REVDAT 7 16-OCT-24 1GYD 1 REMARK REVDAT 6 01-MAY-24 1GYD 1 REMARK REVDAT 5 28-FEB-18 1GYD 1 TITLE SOURCE JRNL REVDAT 4 13-JUL-11 1GYD 1 VERSN REVDAT 3 24-FEB-09 1GYD 1 VERSN REVDAT 2 28-FEB-03 1GYD 1 REMARK SSBOND REVDAT 1 23-AUG-02 1GYD 0 JRNL AUTH D.NURIZZO,J.P.TURKENBURG,S.J.CHARNOCK,S.M.ROBERTS, JRNL AUTH 2 E.J.DODSON,V.A.MCKIE,E.J.TAYLOR,H.J.GILBERT,G.J.DAVIES JRNL TITL CELLVIBRIO JAPONICUS ALPHA-L-ARABINANASE 43A HAS A NOVEL JRNL TITL 2 FIVE-BLADE BETA-PROPELLER FOLD. JRNL REF NAT. STRUCT. BIOL. V. 9 665 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12198486 JRNL DOI 10.1038/NSB835 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.13 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.93000 REMARK 3 B22 (A**2) : 2.93000 REMARK 3 B33 (A**2) : -4.40000 REMARK 3 B12 (A**2) : 1.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2653 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2278 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3604 ; 1.416 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5313 ; 1.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2972 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 436 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2666 ; 0.248 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1435 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.321 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.448 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 0.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2511 ; 1.031 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 1.614 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1091 ; 2.422 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9005 33.7098 57.6413 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 1.0366 REMARK 3 T33: 0.3856 T12: 0.1097 REMARK 3 T13: 0.0498 T23: -0.2017 REMARK 3 L TENSOR REMARK 3 L11: 3.5193 L22: 2.1379 REMARK 3 L33: 1.6612 L12: -0.5085 REMARK 3 L13: -0.2152 L23: -1.4596 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -1.2926 S13: 0.1597 REMARK 3 S21: 0.4009 S22: -0.1109 S23: 0.5623 REMARK 3 S31: -0.1693 S32: -1.0629 S33: 0.0982 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 59.2337 37.7888 45.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.5953 REMARK 3 T33: 0.3710 T12: 0.1844 REMARK 3 T13: -0.0613 T23: -0.2164 REMARK 3 L TENSOR REMARK 3 L11: 1.9277 L22: 2.3109 REMARK 3 L33: 6.7761 L12: -0.3786 REMARK 3 L13: -0.1927 L23: 1.8407 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: -0.7560 S13: 0.3571 REMARK 3 S21: 0.0517 S22: -0.1867 S23: 0.4624 REMARK 3 S31: -0.5477 S32: -1.3184 S33: 0.3105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 73.0963 34.3799 39.7392 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.1399 REMARK 3 T33: 0.1984 T12: 0.0625 REMARK 3 T13: -0.0426 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 2.6981 L22: 1.4375 REMARK 3 L33: 4.2069 L12: 0.3881 REMARK 3 L13: 1.5270 L23: 0.5724 REMARK 3 S TENSOR REMARK 3 S11: -0.2106 S12: -0.4244 S13: 0.3361 REMARK 3 S21: -0.1229 S22: 0.0104 S23: 0.0403 REMARK 3 S31: -0.5389 S32: -0.5093 S33: 0.2002 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 212 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): 76.8718 23.4284 49.5754 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.2867 REMARK 3 T33: 0.1842 T12: -0.0403 REMARK 3 T13: 0.0063 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 3.8179 L22: 1.1101 REMARK 3 L33: 4.1535 L12: 0.0700 REMARK 3 L13: 2.3381 L23: 0.2094 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.8265 S13: -0.3818 REMARK 3 S21: 0.1589 S22: -0.0443 S23: 0.0410 REMARK 3 S31: 0.3603 S32: -0.6396 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 286 B 346 REMARK 3 ORIGIN FOR THE GROUP (A): 68.9433 23.2276 62.3007 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.8806 REMARK 3 T33: 0.2436 T12: -0.0600 REMARK 3 T13: 0.0655 T23: 0.0805 REMARK 3 L TENSOR REMARK 3 L11: 5.4533 L22: 1.7831 REMARK 3 L33: 1.8056 L12: 1.3372 REMARK 3 L13: 1.4611 L23: -0.3293 REMARK 3 S TENSOR REMARK 3 S11: 0.1221 S12: -1.3843 S13: -0.2893 REMARK 3 S21: 0.3879 S22: -0.0365 S23: 0.2021 REMARK 3 S31: 0.2778 S32: -0.7741 S33: -0.0856 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1GYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-02. REMARK 100 THE DEPOSITION ID IS D_1290009760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.770 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.95 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: TRICLINIC STRUCTURE PREVIOUSLY SOLVED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000 100MM TRIS-HCL PH8.0, 20% REMARK 280 GLYCEROL, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.14467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.07233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.60850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.53617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 147.68083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.14467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.07233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.53617 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.60850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 147.68083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2079 O HOH B 2104 9765 1.64 REMARK 500 O HOH B 2068 O HOH B 2104 9765 1.71 REMARK 500 O HOH B 2063 O HOH B 2068 9765 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 140 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 158 CB - CG - OD2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP B 298 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 301 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 57 111.04 70.04 REMARK 500 VAL B 66 -50.69 -121.99 REMARK 500 THR B 77 -98.83 -120.81 REMARK 500 GLN B 150 -18.73 78.05 REMARK 500 LEU B 153 51.00 -99.09 REMARK 500 ASP B 158 56.01 76.26 REMARK 500 PHE B 176 -153.05 57.80 REMARK 500 TRP B 177 -129.92 48.18 REMARK 500 ALA B 222 62.22 72.82 REMARK 500 LYS B 244 88.70 40.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2011 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 6.55 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GYE RELATED DB: PDB REMARK 900 STRUCTURE OF CELLVIBRIO CELLULOSA ALPHA-L- ARABINANASE COMPLEXED REMARK 900 WITH ARABINOHEXAOSE REMARK 900 RELATED ID: 1GYH RELATED DB: PDB REMARK 900 STRUCTURE OF D158A CELLVIBRIO CELLULOSA ALPHA -L-ARABINANASE MUTANT DBREF 1GYD B 33 347 PDB 1GYD 1GYD 33 347 SEQRES 1 B 315 GLN VAL ASP VAL HIS ASP PRO VAL MET THR ARG GLU GLY SEQRES 2 B 315 ASP THR TRP TYR LEU PHE SER THR GLY PRO GLY ILE THR SEQRES 3 B 315 ILE TYR SER SER LYS ASP ARG VAL ASN TRP ARG TYR SER SEQRES 4 B 315 ASP ARG ALA PHE ALA THR GLU PRO THR TRP ALA LYS ARG SEQRES 5 B 315 VAL SER PRO SER PHE ASP GLY HIS LEU TRP ALA PRO ASP SEQRES 6 B 315 ILE TYR GLN HIS LYS GLY LEU PHE TYR LEU TYR TYR SER SEQRES 7 B 315 VAL SER ALA PHE GLY LYS ASN THR SER ALA ILE GLY VAL SEQRES 8 B 315 THR VAL ASN LYS THR LEU ASN PRO ALA SER PRO ASP TYR SEQRES 9 B 315 ARG TRP GLU ASP LYS GLY ILE VAL ILE GLU SER VAL PRO SEQRES 10 B 315 GLN ARG ASP LEU TRP ASN ALA ILE ASP PRO ALA ILE ILE SEQRES 11 B 315 ALA ASP ASP HIS GLY GLN VAL TRP MET SER PHE GLY SER SEQRES 12 B 315 PHE TRP GLY GLY LEU LYS LEU PHE LYS LEU ASN ASP ASP SEQRES 13 B 315 LEU THR ARG PRO ALA GLU PRO GLN GLU TRP HIS SER ILE SEQRES 14 B 315 ALA LYS LEU GLU ARG SER VAL LEU MET ASP ASP SER GLN SEQRES 15 B 315 ALA GLY SER ALA GLN ILE GLU ALA PRO PHE ILE LEU ARG SEQRES 16 B 315 LYS GLY ASP TYR TYR TYR LEU PHE ALA SER TRP GLY LEU SEQRES 17 B 315 CYS CYS ARG LYS GLY ASP SER THR TYR HIS LEU VAL VAL SEQRES 18 B 315 GLY ARG SER LYS GLN VAL THR GLY PRO TYR LEU ASP LYS SEQRES 19 B 315 THR GLY ARG ASP MET ASN GLN GLY GLY GLY SER LEU LEU SEQRES 20 B 315 ILE LYS GLY ASN LYS ARG TRP VAL GLY LEU GLY HIS ASN SEQRES 21 B 315 SER ALA TYR THR TRP ASP GLY LYS ASP TYR LEU VAL LEU SEQRES 22 B 315 HIS ALA TYR GLU ALA ALA ASP ASN TYR LEU GLN LYS LEU SEQRES 23 B 315 LYS ILE LEU ASN LEU HIS TRP ASP GLY GLU GLY TRP PRO SEQRES 24 B 315 GLN VAL ASP GLU LYS GLU LEU ASP SER TYR ILE SER GLN SEQRES 25 B 315 ARG LEU LYS FORMUL 2 HOH *184(H2 O) HELIX 1 1 TRP B 81 SER B 86 1 6 HELIX 2 2 MET B 271 GLY B 274 5 4 HELIX 3 3 LYS B 336 TYR B 341 1 6 SHEET 1 BA 5 VAL B 40 GLU B 44 0 SHEET 2 BA 5 THR B 47 SER B 52 -1 O THR B 47 N GLU B 44 SHEET 3 BA 5 THR B 58 SER B 62 -1 O THR B 58 N SER B 52 SHEET 4 BA 5 ASN B 67 ARG B 73 -1 O ARG B 69 N SER B 61 SHEET 5 BA 5 GLN B 344 ARG B 345 1 O GLN B 344 N TRP B 68 SHEET 1 BB 5 GLY B 54 PRO B 55 0 SHEET 2 BB 5 HIS B 92 HIS B 101 -1 O LEU B 93 N GLY B 54 SHEET 3 BB 5 LEU B 104 VAL B 111 -1 O LEU B 104 N HIS B 101 SHEET 4 BB 5 SER B 119 ASN B 126 -1 O ALA B 120 N VAL B 111 SHEET 5 BB 5 GLU B 139 SER B 147 -1 O GLU B 139 N VAL B 125 SHEET 1 BC 4 ALA B 160 ALA B 163 0 SHEET 2 BC 4 VAL B 169 PHE B 173 -1 O TRP B 170 N ILE B 162 SHEET 3 BC 4 LEU B 180 LYS B 184 -1 O LYS B 181 N PHE B 173 SHEET 4 BC 4 TRP B 198 ALA B 202 -1 O HIS B 199 N LEU B 182 SHEET 1 BD 4 ILE B 220 LYS B 228 0 SHEET 2 BD 4 TYR B 231 TRP B 238 -1 O TYR B 231 N LYS B 228 SHEET 3 BD 4 HIS B 250 SER B 256 -1 O HIS B 250 N TRP B 238 SHEET 4 BD 4 SER B 277 ILE B 280 -1 O SER B 277 N VAL B 253 SHEET 1 BE 3 TRP B 286 TRP B 297 0 SHEET 2 BE 3 LYS B 300 GLU B 309 -1 O LYS B 300 N TRP B 297 SHEET 3 BE 3 GLN B 316 ASN B 322 -1 O LYS B 317 N ALA B 307 SHEET 1 BF 2 HIS B 324 TRP B 325 0 SHEET 2 BF 2 PRO B 331 GLN B 332 -1 O GLN B 332 N HIS B 324 SSBOND 1 CYS B 241 CYS B 242 1555 1555 2.07 CISPEP 1 GLU B 194 PRO B 195 0 -2.44 CISPEP 2 GLY B 261 PRO B 262 0 1.99 CRYST1 90.078 90.078 177.217 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011101 0.006409 0.000000 0.00000 SCALE2 0.000000 0.012819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005643 0.00000