HEADER HYDROLASE 23-APR-02 1GYE TITLE STRUCTURE OF CELLVIBRIO CELLULOSA ALPHA-L-ARABINANASE COMPLEXED WITH TITLE 2 ARABINOHEXAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINAN ENDO-1,5-ALPHA-L-ARABINOSIDASE A; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ALPHA-L-ARABINANASE, ABN A, ENDO-1,5-ALPHA-L-ARABINANASE A; COMPND 5 EC: 3.2.1.99; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO CELLULOSA; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PVM1 KEYWDS ARABINANASE, HYDROLASE, PROPELLER, CATALYSIS, CELLVIBRIO, PSEUDOMONAS EXPDTA X-RAY DIFFRACTION AUTHOR D.NURIZZO,J.P.TURKENBURG,S.J.CHARNOCK,S.M.ROBERTS,E.J.DODSON, AUTHOR 2 V.A.MCKIE,E.J.TAYLOR,H.J.GILBERT,G.J.DAVIES REVDAT 8 06-NOV-24 1GYE 1 REMARK REVDAT 7 01-MAY-24 1GYE 1 HETSYN REVDAT 6 29-JUL-20 1GYE 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 28-FEB-18 1GYE 1 TITLE SOURCE JRNL REVDAT 4 13-JUL-11 1GYE 1 VERSN REVDAT 3 24-FEB-09 1GYE 1 VERSN REVDAT 2 21-SEP-05 1GYE 1 CONECT REVDAT 1 23-AUG-02 1GYE 0 JRNL AUTH D.NURIZZO,J.P.TURKENBURG,S.J.CHARNOCK,S.M.ROBERTS, JRNL AUTH 2 E.J.DODSON,V.A.MCKIE,E.J.TAYLOR,H.J.GILBERT,G.J.DAVIES JRNL TITL CELLVIBRIO JAPONICUS ALPHA-L-ARABINANASE 43A HAS A NOVEL JRNL TITL 2 FIVE-BLADE BETA-PROPELLER FOLD. JRNL REF NAT. STRUCT. BIOL. V. 9 665 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12198486 JRNL DOI 10.1038/NSB835 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.13 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90000 REMARK 3 B22 (A**2) : 2.90000 REMARK 3 B33 (A**2) : -4.36000 REMARK 3 B12 (A**2) : 1.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.372 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2683 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 3655 ; 1.763 ; 1.948 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 7.284 ; 5.000 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2043 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1158 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 0.672 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2502 ; 1.221 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1153 ; 3.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 83 REMARK 3 ORIGIN FOR THE GROUP (A): 57.2986 32.8283 57.8518 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 1.0864 REMARK 3 T33: 0.3086 T12: 0.2148 REMARK 3 T13: 0.1198 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 3.3785 L22: 3.4078 REMARK 3 L33: 1.1145 L12: -0.6590 REMARK 3 L13: 1.4380 L23: -2.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.3776 S12: -1.4237 S13: 0.0000 REMARK 3 S21: 0.6320 S22: 0.3084 S23: 0.4219 REMARK 3 S31: -0.1688 S32: -1.2992 S33: 0.0692 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 84 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 59.7432 37.3717 45.5901 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.5484 REMARK 3 T33: 0.2919 T12: 0.1638 REMARK 3 T13: -0.0240 T23: -0.1412 REMARK 3 L TENSOR REMARK 3 L11: 2.9204 L22: 2.6131 REMARK 3 L33: 5.8163 L12: -1.1098 REMARK 3 L13: -0.7019 L23: 1.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.6896 S13: 0.3015 REMARK 3 S21: 0.0870 S22: 0.0444 S23: 0.3893 REMARK 3 S31: -0.5243 S32: -1.1414 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 73.7624 34.5929 39.8114 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.1457 REMARK 3 T33: 0.1606 T12: 0.0520 REMARK 3 T13: -0.0460 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 3.2305 L22: 1.9697 REMARK 3 L33: 4.0007 L12: -0.1231 REMARK 3 L13: 1.0025 L23: 1.5226 REMARK 3 S TENSOR REMARK 3 S11: -0.2105 S12: -0.4280 S13: 0.3641 REMARK 3 S21: -0.1004 S22: 0.1284 S23: -0.0049 REMARK 3 S31: -0.4887 S32: -0.2396 S33: 0.0821 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 212 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): 77.3773 23.1699 49.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.2694 REMARK 3 T33: 0.1126 T12: 0.0120 REMARK 3 T13: -0.0114 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 4.7895 L22: 3.3789 REMARK 3 L33: 3.5573 L12: 0.5829 REMARK 3 L13: 1.9528 L23: 0.9119 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.8539 S13: -0.3592 REMARK 3 S21: 0.2539 S22: 0.0972 S23: 0.0410 REMARK 3 S31: 0.2444 S32: -0.4209 S33: -0.0869 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 286 B 346 REMARK 3 ORIGIN FOR THE GROUP (A): 69.6708 22.8219 62.1836 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.8890 REMARK 3 T33: 0.2265 T12: 0.0501 REMARK 3 T13: 0.0631 T23: 0.1524 REMARK 3 L TENSOR REMARK 3 L11: 7.1111 L22: 2.4082 REMARK 3 L33: 2.7266 L12: 1.5769 REMARK 3 L13: 0.3599 L23: -0.1568 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -1.7407 S13: -0.3430 REMARK 3 S21: 0.5876 S22: 0.0408 S23: 0.1698 REMARK 3 S31: 0.1782 S32: -0.7942 S33: -0.1651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-02. REMARK 100 THE DEPOSITION ID IS D_1290009761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.47 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.74 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NATIVE STRUCTURE SOLVED PREVIOUSLY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 100MM TRIS-HCL PH8.0, 20% REMARK 280 GLYCEROL, 100MM ARABINOTRIOSE, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.36933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.18467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.77700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.59233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 147.96167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.36933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.18467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.59233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.77700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 147.96167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL CL B 901 O HOH B 2025 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 165 CB ASP B 165 CG 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 135 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 165 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 227 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 298 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU B 321 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 57 110.82 71.04 REMARK 500 ASP B 64 12.07 -147.75 REMARK 500 ARG B 65 -0.47 63.46 REMARK 500 THR B 77 -92.10 -128.98 REMARK 500 PHE B 89 123.46 -27.05 REMARK 500 HIS B 101 119.09 -161.07 REMARK 500 ARG B 137 136.47 -170.74 REMARK 500 GLN B 150 -25.42 78.16 REMARK 500 LEU B 153 54.14 -97.73 REMARK 500 ALA B 158 56.60 72.48 REMARK 500 PHE B 176 -153.51 53.23 REMARK 500 TRP B 177 -132.41 47.81 REMARK 500 ALA B 222 58.04 73.57 REMARK 500 LYS B 244 -123.09 58.41 REMARK 500 ASN B 283 -140.98 -155.39 REMARK 500 HIS B 291 68.63 38.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2003 DISTANCE = 6.09 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GYD RELATED DB: PDB REMARK 900 STRUCTURE OF CELLVIBRIO CELLULOSA ALPHA-L- ARABINANASE REMARK 900 RELATED ID: 1GYH RELATED DB: PDB REMARK 900 STRUCTURE OF D158A CELLVIBRIO CELLULOSA ALPHA -L-ARABINANASE MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED MUTATION: ASP(158)ALA DBREF 1GYE B 32 346 PDB 1GYE 1GYE 32 346 SEQRES 1 B 315 LYS GLN VAL ASP VAL HIS ASP PRO VAL MET THR ARG GLU SEQRES 2 B 315 GLY ALA THR TRP TYR LEU PHE SER THR GLY PRO GLY ILE SEQRES 3 B 315 THR ILE TYR SER SER LYS ASP ARG VAL ASN TRP ARG TYR SEQRES 4 B 315 SER ASP ARG ALA PHE ALA THR GLU PRO THR TRP ALA LYS SEQRES 5 B 315 ARG VAL SER PRO SER PHE ASP GLY HIS LEU TRP ALA PRO SEQRES 6 B 315 ASP ILE TYR GLN HIS LYS GLY LEU PHE TYR LEU TYR TYR SEQRES 7 B 315 SER VAL SER ALA PHE GLY LYS ASN THR SER ALA ILE GLY SEQRES 8 B 315 VAL THR VAL ASN LYS THR LEU ASN PRO ALA SER PRO ASP SEQRES 9 B 315 TYR ARG TRP GLU ASP LYS GLY ILE VAL ILE GLU SER VAL SEQRES 10 B 315 PRO GLN ARG ASP LEU TRP ASN ALA ILE ALA PRO ALA ILE SEQRES 11 B 315 ILE ALA ASP ASP HIS GLY GLN VAL TRP MET SER PHE GLY SEQRES 12 B 315 SER PHE TRP GLY GLY LEU LYS LEU PHE LYS LEU ASN ASP SEQRES 13 B 315 ASP LEU THR ARG PRO ALA GLU PRO GLN GLU TRP HIS SER SEQRES 14 B 315 ILE ALA LYS LEU GLU ARG SER VAL LEU MET ASP ASP SER SEQRES 15 B 315 GLN ALA GLY SER ALA GLN ILE GLU ALA PRO PHE ILE LEU SEQRES 16 B 315 ARG LYS GLY ASP TYR TYR TYR LEU PHE ALA SER TRP GLY SEQRES 17 B 315 LEU CYS CYS ARG LYS GLY ASP SER THR TYR HIS LEU VAL SEQRES 18 B 315 VAL GLY ARG SER LYS GLN VAL THR GLY PRO TYR LEU ASP SEQRES 19 B 315 LYS THR GLY ARG ASP MET ASN GLN GLY GLY GLY SER LEU SEQRES 20 B 315 LEU ILE LYS GLY ASN LYS ARG TRP VAL GLY LEU GLY HIS SEQRES 21 B 315 ASN SER ALA TYR THR TRP ASP GLY LYS ASP TYR LEU VAL SEQRES 22 B 315 LEU HIS ALA TYR GLU ALA ALA ASP ASN TYR LEU GLN LYS SEQRES 23 B 315 LEU LYS ILE LEU ASN LEU HIS TRP ASP GLY GLU GLY TRP SEQRES 24 B 315 PRO GLN VAL ASP GLU LYS GLU LEU ASP SER TYR ILE SER SEQRES 25 B 315 GLN ARG LEU HET AHR A 1 10 HET AHR A 2 9 HET AHR A 3 9 HET AHR A 4 9 HET AHR A 5 9 HET AHR A 6 9 HET CL B 901 1 HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM CL CHLORIDE ION HETSYN AHR ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE FORMUL 2 AHR 6(C5 H10 O5) FORMUL 3 CL CL 1- FORMUL 4 HOH *77(H2 O) HELIX 1 1 TRP B 81 SER B 86 1 6 HELIX 2 2 ARG B 243 SER B 247 5 5 HELIX 3 3 MET B 271 GLY B 274 5 4 HELIX 4 4 ALA B 311 ASN B 313 5 3 HELIX 5 5 LYS B 336 TYR B 341 1 6 SHEET 1 BA 5 VAL B 40 GLU B 44 0 SHEET 2 BA 5 THR B 47 SER B 52 -1 O THR B 47 N GLU B 44 SHEET 3 BA 5 THR B 58 SER B 62 -1 O THR B 58 N SER B 52 SHEET 4 BA 5 ASN B 67 ARG B 73 -1 O ARG B 69 N SER B 61 SHEET 5 BA 5 GLN B 344 LEU B 346 1 O GLN B 344 N TRP B 68 SHEET 1 BB 5 GLY B 54 PRO B 55 0 SHEET 2 BB 5 HIS B 92 HIS B 101 -1 O LEU B 93 N GLY B 54 SHEET 3 BB 5 LEU B 104 VAL B 111 -1 O LEU B 104 N HIS B 101 SHEET 4 BB 5 SER B 119 ASN B 126 -1 O ALA B 120 N VAL B 111 SHEET 5 BB 5 GLU B 139 SER B 147 -1 O GLU B 139 N VAL B 125 SHEET 1 BC 4 ALA B 160 ALA B 163 0 SHEET 2 BC 4 VAL B 169 PHE B 173 -1 O TRP B 170 N ILE B 162 SHEET 3 BC 4 LEU B 180 LYS B 184 -1 O LYS B 181 N PHE B 173 SHEET 4 BC 4 TRP B 198 ALA B 202 -1 O HIS B 199 N LEU B 182 SHEET 1 BD 4 ILE B 220 LYS B 228 0 SHEET 2 BD 4 TYR B 231 TRP B 238 -1 O TYR B 231 N LYS B 228 SHEET 3 BD 4 HIS B 250 SER B 256 -1 O HIS B 250 N TRP B 238 SHEET 4 BD 4 SER B 277 ILE B 280 -1 O SER B 277 N VAL B 253 SHEET 1 BE 3 TRP B 286 TRP B 297 0 SHEET 2 BE 3 LYS B 300 GLU B 309 -1 O LYS B 300 N TRP B 297 SHEET 3 BE 3 GLN B 316 ASN B 322 -1 O LYS B 317 N ALA B 307 SHEET 1 BF 2 HIS B 324 TRP B 325 0 SHEET 2 BF 2 PRO B 331 GLN B 332 -1 O GLN B 332 N HIS B 324 SSBOND 1 CYS B 241 CYS B 242 1555 1555 2.16 LINK O5 AHR A 1 C1 AHR A 2 1555 1555 1.42 LINK O5 AHR A 2 C1 AHR A 3 1555 1555 1.41 LINK O5 AHR A 3 C1 AHR A 4 1555 1555 1.42 LINK O5 AHR A 4 C1 AHR A 5 1555 1555 1.43 LINK O5 AHR A 5 C1 AHR A 6 1555 1555 1.43 CISPEP 1 GLU B 194 PRO B 195 0 -1.09 CISPEP 2 GLY B 261 PRO B 262 0 8.22 CRYST1 90.605 90.605 177.554 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011037 0.006372 0.000000 0.00000 SCALE2 0.000000 0.012744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005632 0.00000