data_1GYU # _entry.id 1GYU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1GYU PDBE EBI-9791 WWPDB D_1290009791 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1GYV unspecified 'GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1, L762E MUTANT' PDB 1GYW unspecified 'GAMMA-ADAPTIN APPENDAGE DOMAIN FROM CLATHRIN ADAPTOR AP1, A753D MUTANT' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1GYU _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-04-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Evans, P.R.' 1 'Owen, D.J.' 2 'McMahon, H.M.' 3 'Kent, H.M.' 4 # _citation.id primary _citation.title 'Gamma-Adaptin Appendage Domain. Structure and Binding Site for Eps15 and Gamma-Synergin' _citation.journal_abbrev Structure _citation.journal_volume 10 _citation.page_first 1139 _citation.page_last ? _citation.year 2002 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12176391 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(02)00801-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kent, H.M.' 1 primary 'Mcmahon, H.M.' 2 primary 'Evans, P.R.' 3 primary 'Benmerah, A.' 4 primary 'Owen, D.J.' 5 # _cell.entry_id 1GYU _cell.length_a 34.090 _cell.length_b 54.820 _cell.length_c 68.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GYU _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUBUNIT' 15588.646 1 ? ? 'APPENDAGE DOMAIN, RESIDUES 703-821' ? 2 water nat water 18.015 171 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GAMMA-ADAPTIN, GOLGI ADAPTOR HA1/AP1 ADAPTIN GAMMA SUBUNIT, CLATHRIN ASSEMBLY PROTEIN COMPLEX 1 GAMMA LARGE CHAIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQL LSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVNNFPPQSWQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQL LSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVNNFPPQSWQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ILE n 1 23 PRO n 1 24 SER n 1 25 ILE n 1 26 THR n 1 27 ALA n 1 28 TYR n 1 29 SER n 1 30 LYS n 1 31 ASN n 1 32 GLY n 1 33 LEU n 1 34 LYS n 1 35 ILE n 1 36 GLU n 1 37 PHE n 1 38 THR n 1 39 PHE n 1 40 GLU n 1 41 ARG n 1 42 SER n 1 43 ASN n 1 44 THR n 1 45 ASN n 1 46 PRO n 1 47 SER n 1 48 VAL n 1 49 THR n 1 50 VAL n 1 51 ILE n 1 52 THR n 1 53 ILE n 1 54 GLN n 1 55 ALA n 1 56 SER n 1 57 ASN n 1 58 SER n 1 59 THR n 1 60 GLU n 1 61 LEU n 1 62 ASP n 1 63 MET n 1 64 THR n 1 65 ASP n 1 66 PHE n 1 67 VAL n 1 68 PHE n 1 69 GLN n 1 70 ALA n 1 71 ALA n 1 72 VAL n 1 73 PRO n 1 74 LYS n 1 75 THR n 1 76 PHE n 1 77 GLN n 1 78 LEU n 1 79 GLN n 1 80 LEU n 1 81 LEU n 1 82 SER n 1 83 PRO n 1 84 SER n 1 85 SER n 1 86 SER n 1 87 VAL n 1 88 VAL n 1 89 PRO n 1 90 ALA n 1 91 PHE n 1 92 ASN n 1 93 THR n 1 94 GLY n 1 95 THR n 1 96 ILE n 1 97 THR n 1 98 GLN n 1 99 VAL n 1 100 ILE n 1 101 LYS n 1 102 VAL n 1 103 LEU n 1 104 ASN n 1 105 PRO n 1 106 GLN n 1 107 LYS n 1 108 GLN n 1 109 GLN n 1 110 LEU n 1 111 ARG n 1 112 MET n 1 113 ARG n 1 114 ILE n 1 115 LYS n 1 116 LEU n 1 117 THR n 1 118 TYR n 1 119 ASN n 1 120 HIS n 1 121 LYS n 1 122 GLY n 1 123 SER n 1 124 ALA n 1 125 MET n 1 126 GLN n 1 127 ASP n 1 128 LEU n 1 129 ALA n 1 130 GLU n 1 131 VAL n 1 132 ASN n 1 133 ASN n 1 134 PHE n 1 135 PRO n 1 136 PRO n 1 137 GLN n 1 138 SER n 1 139 TRP n 1 140 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1GYU 1 ? ? 1GYU ? 2 UNP A1G1_MOUSE 1 ? ? P22892 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1GYU A 1 ? 21 ? 1GYU 683 ? 703 ? 683 703 2 2 1GYU A 22 ? 140 ? P22892 703 ? 821 ? 704 822 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1GYU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.66 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.40 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '50MM HEPES PH7.4, 0.9M NA/K TARTRATE, 20% W/V GLYCEROL, pH 7.40' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-03-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54182 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-13' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54182 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1GYU _reflns.observed_criterion_sigma_I 6.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.000 _reflns.d_resolution_high 1.810 _reflns.number_obs 11924 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.06400 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.700 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.81 _reflns_shell.d_res_low 1.91 _reflns_shell.percent_possible_all 92.2 _reflns_shell.Rmerge_I_obs 0.24200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.000 _reflns_shell.pdbx_redundancy 3.60 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1GYU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10724 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.64 _refine.ls_d_res_high 1.81 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.180 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.223 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 1164 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 18.04 _refine.aniso_B[1][1] 0.27000 _refine.aniso_B[2][2] -0.82000 _refine.aniso_B[3][3] 0.54000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.138 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.115 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.681 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 931 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 1102 _refine_hist.d_res_high 1.81 _refine_hist.d_res_low 42.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.032 0.022 ? 950 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 853 'X-RAY DIFFRACTION' ? r_angle_refined_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.203 1.938 ? 1295 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 1.050 3.000 ? 1995 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 1045 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 173 'X-RAY DIFFRACTION' ? r_nbd_refined 0.242 0.300 ? 140 'X-RAY DIFFRACTION' ? r_nbd_other 0.232 0.300 ? 845 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.258 0.500 ? 144 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.031 0.500 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.168 0.300 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.211 0.300 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.327 0.500 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.602 1.500 ? 605 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.750 2.000 ? 994 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.146 3.000 ? 345 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.828 4.500 ? 301 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.81 _refine_ls_shell.d_res_low 1.86 _refine_ls_shell.number_reflns_R_work 673 _refine_ls_shell.R_factor_R_work 0.2310 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2960 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1GYU _struct.title 'Gamma-adaptin appendage domain from clathrin adaptor AP1' _struct.pdbx_descriptor 'ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUBUNIT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1GYU _struct_keywords.pdbx_keywords ENDOCYTOSIS _struct_keywords.text 'CLATHRIN, GOLGI, ADAPTIN, ENDOCYTOSIS, ADAPTOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 89 ? THR A 93 ? PRO A 771 THR A 775 5 ? 5 HELX_P HELX_P2 2 PRO A 135 ? TRP A 139 ? PRO A 817 TRP A 821 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 25 ? LYS A 30 ? ILE A 707 LYS A 712 AA 2 LEU A 33 ? ARG A 41 ? LEU A 715 ARG A 723 AA 3 VAL A 48 ? ASN A 57 ? VAL A 730 ASN A 739 AA 4 ILE A 96 ? LEU A 103 ? ILE A 778 LEU A 785 AA 5 GLN A 77 ? LEU A 80 ? GLN A 759 LEU A 762 AB 1 THR A 64 ? ALA A 71 ? THR A 746 ALA A 753 AB 2 MET A 112 ? HIS A 120 ? MET A 794 HIS A 802 AB 3 SER A 123 ? VAL A 131 ? SER A 805 VAL A 813 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 30 ? N LYS A 712 O LEU A 33 ? O LEU A 715 AA 2 3 N GLU A 40 ? N GLU A 722 O VAL A 50 ? O VAL A 732 AA 3 4 N ALA A 55 ? N ALA A 737 O ILE A 96 ? O ILE A 778 AA 4 5 N LEU A 103 ? N LEU A 785 O GLN A 77 ? O GLN A 759 AB 1 2 N ALA A 71 ? N ALA A 753 O ARG A 113 ? O ARG A 795 AB 2 3 N HIS A 120 ? N HIS A 802 O SER A 123 ? O SER A 805 # _database_PDB_matrix.entry_id 1GYU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1GYU _atom_sites.fract_transf_matrix[1][1] 0.029334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014704 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 683 ? ? ? A . n A 1 2 GLY 2 684 ? ? ? A . n A 1 3 SER 3 685 ? ? ? A . n A 1 4 SER 4 686 ? ? ? A . n A 1 5 HIS 5 687 ? ? ? A . n A 1 6 HIS 6 688 ? ? ? A . n A 1 7 HIS 7 689 ? ? ? A . n A 1 8 HIS 8 690 ? ? ? A . n A 1 9 HIS 9 691 ? ? ? A . n A 1 10 HIS 10 692 ? ? ? A . n A 1 11 SER 11 693 ? ? ? A . n A 1 12 SER 12 694 ? ? ? A . n A 1 13 GLY 13 695 ? ? ? A . n A 1 14 LEU 14 696 ? ? ? A . n A 1 15 VAL 15 697 ? ? ? A . n A 1 16 PRO 16 698 ? ? ? A . n A 1 17 ARG 17 699 ? ? ? A . n A 1 18 GLY 18 700 ? ? ? A . n A 1 19 SER 19 701 ? ? ? A . n A 1 20 HIS 20 702 ? ? ? A . n A 1 21 MET 21 703 703 MET MET A . n A 1 22 ILE 22 704 704 ILE ILE A . n A 1 23 PRO 23 705 705 PRO PRO A . n A 1 24 SER 24 706 706 SER SER A . n A 1 25 ILE 25 707 707 ILE ILE A . n A 1 26 THR 26 708 708 THR THR A . n A 1 27 ALA 27 709 709 ALA ALA A . n A 1 28 TYR 28 710 710 TYR TYR A . n A 1 29 SER 29 711 711 SER SER A . n A 1 30 LYS 30 712 712 LYS LYS A . n A 1 31 ASN 31 713 713 ASN ASN A . n A 1 32 GLY 32 714 714 GLY GLY A . n A 1 33 LEU 33 715 715 LEU LEU A . n A 1 34 LYS 34 716 716 LYS LYS A . n A 1 35 ILE 35 717 717 ILE ILE A . n A 1 36 GLU 36 718 718 GLU GLU A . n A 1 37 PHE 37 719 719 PHE PHE A . n A 1 38 THR 38 720 720 THR THR A . n A 1 39 PHE 39 721 721 PHE PHE A . n A 1 40 GLU 40 722 722 GLU GLU A . n A 1 41 ARG 41 723 723 ARG ARG A . n A 1 42 SER 42 724 724 SER SER A . n A 1 43 ASN 43 725 725 ASN ASN A . n A 1 44 THR 44 726 726 THR THR A . n A 1 45 ASN 45 727 727 ASN ASN A . n A 1 46 PRO 46 728 728 PRO PRO A . n A 1 47 SER 47 729 729 SER SER A . n A 1 48 VAL 48 730 730 VAL VAL A . n A 1 49 THR 49 731 731 THR THR A . n A 1 50 VAL 50 732 732 VAL VAL A . n A 1 51 ILE 51 733 733 ILE ILE A . n A 1 52 THR 52 734 734 THR THR A . n A 1 53 ILE 53 735 735 ILE ILE A . n A 1 54 GLN 54 736 736 GLN GLN A . n A 1 55 ALA 55 737 737 ALA ALA A . n A 1 56 SER 56 738 738 SER SER A . n A 1 57 ASN 57 739 739 ASN ASN A . n A 1 58 SER 58 740 740 SER SER A . n A 1 59 THR 59 741 741 THR THR A . n A 1 60 GLU 60 742 742 GLU GLU A . n A 1 61 LEU 61 743 743 LEU LEU A . n A 1 62 ASP 62 744 744 ASP ASP A . n A 1 63 MET 63 745 745 MET MET A . n A 1 64 THR 64 746 746 THR THR A . n A 1 65 ASP 65 747 747 ASP ASP A . n A 1 66 PHE 66 748 748 PHE PHE A . n A 1 67 VAL 67 749 749 VAL VAL A . n A 1 68 PHE 68 750 750 PHE PHE A . n A 1 69 GLN 69 751 751 GLN GLN A . n A 1 70 ALA 70 752 752 ALA ALA A . n A 1 71 ALA 71 753 753 ALA ALA A . n A 1 72 VAL 72 754 754 VAL VAL A . n A 1 73 PRO 73 755 755 PRO PRO A . n A 1 74 LYS 74 756 756 LYS LYS A . n A 1 75 THR 75 757 757 THR THR A . n A 1 76 PHE 76 758 758 PHE PHE A . n A 1 77 GLN 77 759 759 GLN GLN A . n A 1 78 LEU 78 760 760 LEU LEU A . n A 1 79 GLN 79 761 761 GLN GLN A . n A 1 80 LEU 80 762 762 LEU LEU A . n A 1 81 LEU 81 763 763 LEU LEU A . n A 1 82 SER 82 764 764 SER SER A . n A 1 83 PRO 83 765 765 PRO PRO A . n A 1 84 SER 84 766 766 SER SER A . n A 1 85 SER 85 767 767 SER SER A . n A 1 86 SER 86 768 768 SER SER A . n A 1 87 VAL 87 769 769 VAL VAL A . n A 1 88 VAL 88 770 770 VAL VAL A . n A 1 89 PRO 89 771 771 PRO PRO A . n A 1 90 ALA 90 772 772 ALA ALA A . n A 1 91 PHE 91 773 773 PHE PHE A . n A 1 92 ASN 92 774 774 ASN ASN A . n A 1 93 THR 93 775 775 THR THR A . n A 1 94 GLY 94 776 776 GLY GLY A . n A 1 95 THR 95 777 777 THR THR A . n A 1 96 ILE 96 778 778 ILE ILE A . n A 1 97 THR 97 779 779 THR THR A . n A 1 98 GLN 98 780 780 GLN GLN A . n A 1 99 VAL 99 781 781 VAL VAL A . n A 1 100 ILE 100 782 782 ILE ILE A . n A 1 101 LYS 101 783 783 LYS LYS A . n A 1 102 VAL 102 784 784 VAL VAL A . n A 1 103 LEU 103 785 785 LEU LEU A . n A 1 104 ASN 104 786 786 ASN ASN A . n A 1 105 PRO 105 787 787 PRO PRO A . n A 1 106 GLN 106 788 788 GLN GLN A . n A 1 107 LYS 107 789 789 LYS LYS A . n A 1 108 GLN 108 790 790 GLN GLN A . n A 1 109 GLN 109 791 791 GLN GLN A . n A 1 110 LEU 110 792 792 LEU LEU A . n A 1 111 ARG 111 793 793 ARG ARG A . n A 1 112 MET 112 794 794 MET MET A . n A 1 113 ARG 113 795 795 ARG ARG A . n A 1 114 ILE 114 796 796 ILE ILE A . n A 1 115 LYS 115 797 797 LYS LYS A . n A 1 116 LEU 116 798 798 LEU LEU A . n A 1 117 THR 117 799 799 THR THR A . n A 1 118 TYR 118 800 800 TYR TYR A . n A 1 119 ASN 119 801 801 ASN ASN A . n A 1 120 HIS 120 802 802 HIS HIS A . n A 1 121 LYS 121 803 803 LYS LYS A . n A 1 122 GLY 122 804 804 GLY GLY A . n A 1 123 SER 123 805 805 SER SER A . n A 1 124 ALA 124 806 806 ALA ALA A . n A 1 125 MET 125 807 807 MET MET A . n A 1 126 GLN 126 808 808 GLN GLN A . n A 1 127 ASP 127 809 809 ASP ASP A . n A 1 128 LEU 128 810 810 LEU LEU A . n A 1 129 ALA 129 811 811 ALA ALA A . n A 1 130 GLU 130 812 812 GLU GLU A . n A 1 131 VAL 131 813 813 VAL VAL A . n A 1 132 ASN 132 814 814 ASN ASN A . n A 1 133 ASN 133 815 815 ASN ASN A . n A 1 134 PHE 134 816 816 PHE PHE A . n A 1 135 PRO 135 817 817 PRO PRO A . n A 1 136 PRO 136 818 818 PRO PRO A . n A 1 137 GLN 137 819 819 GLN GLN A . n A 1 138 SER 138 820 820 SER SER A . n A 1 139 TRP 139 821 821 TRP TRP A . n A 1 140 GLN 140 822 822 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . B 2 HOH 88 2088 2088 HOH HOH A . B 2 HOH 89 2089 2089 HOH HOH A . B 2 HOH 90 2090 2090 HOH HOH A . B 2 HOH 91 2091 2091 HOH HOH A . B 2 HOH 92 2092 2092 HOH HOH A . B 2 HOH 93 2093 2093 HOH HOH A . B 2 HOH 94 2094 2094 HOH HOH A . B 2 HOH 95 2095 2095 HOH HOH A . B 2 HOH 96 2096 2096 HOH HOH A . B 2 HOH 97 2097 2097 HOH HOH A . B 2 HOH 98 2098 2098 HOH HOH A . B 2 HOH 99 2099 2099 HOH HOH A . B 2 HOH 100 2100 2100 HOH HOH A . B 2 HOH 101 2101 2101 HOH HOH A . B 2 HOH 102 2102 2102 HOH HOH A . B 2 HOH 103 2103 2103 HOH HOH A . B 2 HOH 104 2104 2104 HOH HOH A . B 2 HOH 105 2105 2105 HOH HOH A . B 2 HOH 106 2106 2106 HOH HOH A . B 2 HOH 107 2107 2107 HOH HOH A . B 2 HOH 108 2108 2108 HOH HOH A . B 2 HOH 109 2109 2109 HOH HOH A . B 2 HOH 110 2110 2110 HOH HOH A . B 2 HOH 111 2111 2111 HOH HOH A . B 2 HOH 112 2112 2112 HOH HOH A . B 2 HOH 113 2113 2113 HOH HOH A . B 2 HOH 114 2114 2114 HOH HOH A . B 2 HOH 115 2115 2115 HOH HOH A . B 2 HOH 116 2116 2116 HOH HOH A . B 2 HOH 117 2117 2117 HOH HOH A . B 2 HOH 118 2118 2118 HOH HOH A . B 2 HOH 119 2119 2119 HOH HOH A . B 2 HOH 120 2120 2120 HOH HOH A . B 2 HOH 121 2121 2121 HOH HOH A . B 2 HOH 122 2122 2122 HOH HOH A . B 2 HOH 123 2123 2123 HOH HOH A . B 2 HOH 124 2124 2124 HOH HOH A . B 2 HOH 125 2125 2125 HOH HOH A . B 2 HOH 126 2126 2126 HOH HOH A . B 2 HOH 127 2127 2127 HOH HOH A . B 2 HOH 128 2128 2128 HOH HOH A . B 2 HOH 129 2129 2129 HOH HOH A . B 2 HOH 130 2130 2130 HOH HOH A . B 2 HOH 131 2131 2131 HOH HOH A . B 2 HOH 132 2132 2132 HOH HOH A . B 2 HOH 133 2133 2133 HOH HOH A . B 2 HOH 134 2134 2134 HOH HOH A . B 2 HOH 135 2135 2135 HOH HOH A . B 2 HOH 136 2136 2136 HOH HOH A . B 2 HOH 137 2137 2137 HOH HOH A . B 2 HOH 138 2138 2138 HOH HOH A . B 2 HOH 139 2139 2139 HOH HOH A . B 2 HOH 140 2140 2140 HOH HOH A . B 2 HOH 141 2141 2141 HOH HOH A . B 2 HOH 142 2142 2142 HOH HOH A . B 2 HOH 143 2143 2143 HOH HOH A . B 2 HOH 144 2144 2144 HOH HOH A . B 2 HOH 145 2145 2145 HOH HOH A . B 2 HOH 146 2146 2146 HOH HOH A . B 2 HOH 147 2147 2147 HOH HOH A . B 2 HOH 148 2148 2148 HOH HOH A . B 2 HOH 149 2149 2149 HOH HOH A . B 2 HOH 150 2150 2150 HOH HOH A . B 2 HOH 151 2151 2151 HOH HOH A . B 2 HOH 152 2152 2152 HOH HOH A . B 2 HOH 153 2153 2153 HOH HOH A . B 2 HOH 154 2154 2154 HOH HOH A . B 2 HOH 155 2155 2155 HOH HOH A . B 2 HOH 156 2156 2156 HOH HOH A . B 2 HOH 157 2157 2157 HOH HOH A . B 2 HOH 158 2158 2158 HOH HOH A . B 2 HOH 159 2159 2159 HOH HOH A . B 2 HOH 160 2160 2160 HOH HOH A . B 2 HOH 161 2161 2161 HOH HOH A . B 2 HOH 162 2162 2162 HOH HOH A . B 2 HOH 163 2163 2163 HOH HOH A . B 2 HOH 164 2164 2164 HOH HOH A . B 2 HOH 165 2165 2165 HOH HOH A . B 2 HOH 166 2166 2166 HOH HOH A . B 2 HOH 167 2167 2167 HOH HOH A . B 2 HOH 168 2168 2168 HOH HOH A . B 2 HOH 169 2169 2169 HOH HOH A . B 2 HOH 170 2170 2170 HOH HOH A . B 2 HOH 171 2171 2171 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-08-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-06-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.0 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? SHARP phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 1GYU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'LEADER IS HIS6-TAG CLONING ARTIFACT' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2055 ? ? O A HOH 2057 ? ? 1.57 2 1 O A HOH 2086 ? ? O A HOH 2137 ? ? 1.86 3 1 O A HOH 2009 ? ? O A HOH 2114 ? ? 1.94 4 1 O A HOH 2098 ? ? O A HOH 2100 ? ? 2.02 5 1 O A HOH 2104 ? ? O A HOH 2106 ? ? 2.04 6 1 NH1 A ARG 723 ? ? O A HOH 2061 ? ? 2.12 7 1 O A HOH 2080 ? ? O A HOH 2083 ? ? 2.16 8 1 O A HOH 2131 ? ? O A HOH 2132 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2130 ? ? 1_555 O A HOH 2135 ? ? 4_455 1.92 2 1 O A HOH 2095 ? ? 1_555 O A HOH 2138 ? ? 4_455 2.14 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE3 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 821 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CZ3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 821 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.255 _pdbx_validate_rmsd_bond.bond_target_value 1.380 _pdbx_validate_rmsd_bond.bond_deviation -0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.017 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 719 ? ? CG A PHE 719 ? ? CD1 A PHE 719 ? ? 125.59 120.80 4.79 0.70 N 2 1 CA A LEU 760 ? ? CB A LEU 760 ? ? CG A LEU 760 ? ? 130.68 115.30 15.38 2.30 N 3 1 NE A ARG 793 ? ? CZ A ARG 793 ? ? NH1 A ARG 793 ? ? 124.65 120.30 4.35 0.50 N 4 1 NE A ARG 793 ? ? CZ A ARG 793 ? ? NH2 A ARG 793 ? ? 116.52 120.30 -3.78 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 821 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.54 _pdbx_validate_torsion.psi 4.40 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2032 ? 6.31 . 2 1 O ? A HOH 2034 ? 6.75 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 712 ? CE ? A LYS 30 CE 2 1 Y 1 A LYS 712 ? NZ ? A LYS 30 NZ 3 1 Y 1 A GLU 718 ? CG ? A GLU 36 CG 4 1 Y 1 A GLU 718 ? CD ? A GLU 36 CD 5 1 Y 1 A GLU 718 ? OE1 ? A GLU 36 OE1 6 1 Y 1 A GLU 718 ? OE2 ? A GLU 36 OE2 7 1 Y 1 A LYS 756 ? CD ? A LYS 74 CD 8 1 Y 1 A LYS 756 ? CE ? A LYS 74 CE 9 1 Y 1 A LYS 756 ? NZ ? A LYS 74 NZ 10 1 Y 1 A LYS 789 ? CD ? A LYS 107 CD 11 1 Y 1 A LYS 789 ? CE ? A LYS 107 CE 12 1 Y 1 A LYS 789 ? NZ ? A LYS 107 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 683 ? A MET 1 2 1 Y 1 A GLY 684 ? A GLY 2 3 1 Y 1 A SER 685 ? A SER 3 4 1 Y 1 A SER 686 ? A SER 4 5 1 Y 1 A HIS 687 ? A HIS 5 6 1 Y 1 A HIS 688 ? A HIS 6 7 1 Y 1 A HIS 689 ? A HIS 7 8 1 Y 1 A HIS 690 ? A HIS 8 9 1 Y 1 A HIS 691 ? A HIS 9 10 1 Y 1 A HIS 692 ? A HIS 10 11 1 Y 1 A SER 693 ? A SER 11 12 1 Y 1 A SER 694 ? A SER 12 13 1 Y 1 A GLY 695 ? A GLY 13 14 1 Y 1 A LEU 696 ? A LEU 14 15 1 Y 1 A VAL 697 ? A VAL 15 16 1 Y 1 A PRO 698 ? A PRO 16 17 1 Y 1 A ARG 699 ? A ARG 17 18 1 Y 1 A GLY 700 ? A GLY 18 19 1 Y 1 A SER 701 ? A SER 19 20 1 Y 1 A HIS 702 ? A HIS 20 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #