HEADER RIBOSOMAL PROTEIN 02-MAY-02 1GYZ TITLE BACTERIAL RIBOSOMAL PROTEIN L20 FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L20; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 59-118; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS RIBOSOMAL PROTEIN, RIBOSOME, PROTEIN SYNTHESIS, TRANSLATIONAL KEYWDS 2 CONTROL, RRNA-BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.RAIBAUD,I.LEBARS,F.BONTEMS,F.DARDEL REVDAT 4 15-MAY-24 1GYZ 1 REMARK REVDAT 3 24-FEB-09 1GYZ 1 VERSN REVDAT 2 10-OCT-02 1GYZ 1 JRNL REMARK REVDAT 1 10-MAY-02 1GYZ 0 JRNL AUTH S.RAIBAUD,I.LEBARS,M.GUILLIER,C.CHIARUTTINI,F.BONTEMS,A.RAK, JRNL AUTH 2 M.GARBER,F.ALLEMAND,M.SPRINGER,F.DARDEL JRNL TITL NMR STRUCTURE OF BACTERIAL RIBOSOMAL PROTEIN L20: JRNL TITL 2 IMPLICATIONS FOR RIBOSOME ASSEMBLY AND TRANSLATIONAL CONTROL JRNL REF J.MOL.BIOL. V. 323 143 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12368106 JRNL DOI 10.1016/S0022-2836(02)00921-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.89 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED SIMUATED ANNEALING FOLLOWED REMARK 3 BY A FINAL MINIMIZATION USING THE CHARMM22 FORCEFIELD REMARK 4 REMARK 4 1GYZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1290009812. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.5 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; NOESY-HMQC; TOCSY-HMQC; REMARK 210 HCCH-TOCSY; DQF-COSY; HNHA; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA, X-PLOR REMARK 210 METHOD USED : HYBRID : DIANA FOLLOWED BY REMARK 210 RESTRAINED SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST DIANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED L20. THE FIRST 58 RESIDUES ARE REMARK 210 PRESENT IN THE SAMPLE BUT ARE DISORDERED IN SOLUTION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 74 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 TYR A 74 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 TYR A 74 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 3 TYR A 74 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 LEU A 93 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 5 PHE A 77 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 9 TRP A 59 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 9 LYS A 91 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 9 LEU A 93 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 10 ALA A 94 CB - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 13 TRP A 59 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 13 TRP A 59 CB - CG - CD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 13 ALA A 94 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 15 TYR A 74 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 15 TYR A 74 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 16 ALA A 94 CB - CA - C ANGL. DEV. = -10.5 DEGREES REMARK 500 17 LEU A 93 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 19 LEU A 81 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 60 -61.03 -147.50 REMARK 500 1 TYR A 74 -24.22 84.80 REMARK 500 1 LEU A 88 -166.98 -127.94 REMARK 500 1 LYS A 91 126.35 136.23 REMARK 500 1 ILE A 92 22.12 82.30 REMARK 500 1 LEU A 115 -72.11 -100.30 REMARK 500 2 ILE A 60 -60.91 -154.49 REMARK 500 2 ALA A 69 -45.86 172.32 REMARK 500 2 TYR A 74 -36.97 91.00 REMARK 500 2 ARG A 90 -33.51 120.25 REMARK 500 2 LYS A 91 127.99 -178.01 REMARK 500 2 ILE A 92 76.08 79.79 REMARK 500 2 LEU A 93 -35.04 177.35 REMARK 500 2 LEU A 115 -77.24 -71.61 REMARK 500 2 VAL A 117 40.74 81.07 REMARK 500 3 ALA A 61 -13.70 71.46 REMARK 500 3 TYR A 74 -27.13 85.09 REMARK 500 3 ILE A 86 -64.86 -99.42 REMARK 500 3 ASP A 89 -141.91 -139.94 REMARK 500 3 ARG A 90 -179.20 76.79 REMARK 500 4 ILE A 60 -63.18 -152.39 REMARK 500 4 TYR A 74 -28.66 84.00 REMARK 500 4 ILE A 86 -62.85 -100.50 REMARK 500 4 GLU A 87 71.67 32.04 REMARK 500 4 ARG A 90 -24.03 101.69 REMARK 500 4 LYS A 91 118.87 -175.52 REMARK 500 4 ILE A 92 81.81 78.46 REMARK 500 4 LEU A 93 -36.08 176.13 REMARK 500 4 VAL A 98 -63.73 -91.07 REMARK 500 4 GLN A 116 51.51 71.00 REMARK 500 5 ILE A 60 44.89 -148.49 REMARK 500 5 TYR A 74 -39.51 96.16 REMARK 500 5 ILE A 86 -65.41 -106.10 REMARK 500 5 ARG A 90 -38.26 171.81 REMARK 500 5 LYS A 91 131.92 169.08 REMARK 500 5 ILE A 92 78.04 70.18 REMARK 500 5 LEU A 93 -34.07 169.54 REMARK 500 5 LEU A 115 -76.94 -103.80 REMARK 500 6 ILE A 60 -63.85 -160.05 REMARK 500 6 TYR A 74 -21.48 87.07 REMARK 500 6 ILE A 86 -70.88 -105.85 REMARK 500 6 ARG A 90 -27.51 89.96 REMARK 500 6 LYS A 91 118.67 -178.57 REMARK 500 6 ILE A 92 82.41 79.50 REMARK 500 6 LEU A 93 -32.92 167.80 REMARK 500 6 GLN A 116 50.71 71.16 REMARK 500 7 ILE A 60 -64.19 -147.57 REMARK 500 7 TYR A 74 -25.57 83.43 REMARK 500 7 ASP A 89 2.57 174.33 REMARK 500 7 ARG A 90 39.34 -95.74 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 115 GLN A 116 1 -144.04 REMARK 500 LEU A 115 GLN A 116 5 -145.47 REMARK 500 LEU A 115 GLN A 116 7 -144.31 REMARK 500 VAL A 111 LYS A 112 9 149.93 REMARK 500 ASP A 89 ARG A 90 10 -145.01 REMARK 500 ASP A 89 ARG A 90 13 111.56 REMARK 500 LEU A 115 GLN A 116 18 -146.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 1GYZ A 59 118 UNP O67086 RL20_AQUAE 59 118 SEQRES 1 A 60 TRP ILE ALA ARG ILE ASN ALA ALA VAL ARG ALA TYR GLY SEQRES 2 A 60 LEU ASN TYR SER THR PHE ILE ASN GLY LEU LYS LYS ALA SEQRES 3 A 60 GLY ILE GLU LEU ASP ARG LYS ILE LEU ALA ASP MET ALA SEQRES 4 A 60 VAL ARG ASP PRO GLN ALA PHE GLU GLN VAL VAL ASN LYS SEQRES 5 A 60 VAL LYS GLU ALA LEU GLN VAL GLN HELIX 1 1 ILE A 60 ARG A 68 1 9 HELIX 2 2 TYR A 74 GLY A 85 1 12 HELIX 3 3 LEU A 93 ASP A 100 1 8 HELIX 4 4 ASP A 100 LEU A 115 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1