HEADER TRANSFERASE 21-MAY-02 1GZE TITLE STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (L177C MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONO-ADP-RIBOSYLTRANSFERASE C3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 41-251; COMPND 5 SYNONYM: EXOENZYME C3; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, ADP-RIBOSYLTRANSFERASE, BACTERIAL TOXIN, C3 EXOENZYME, KEYWDS 2 NAD EXPDTA X-RAY DIFFRACTION AUTHOR J.MENETREY,G.FLATAU,E.A.STURA,J.B.CHARBONNIER,F.GAS,J.M.TEULON,M.H.LE AUTHOR 2 DU,P.BOQUET,A.MENEZ REVDAT 3 13-DEC-23 1GZE 1 LINK REVDAT 2 24-FEB-09 1GZE 1 VERSN REVDAT 1 29-AUG-02 1GZE 0 JRNL AUTH J.MENETREY,G.FLATAU,E.A.STURA,J.B.CHARBONNIER,F.GAS, JRNL AUTH 2 J.M.TEULON,M.H.LE DU,P.BOQUET,A.MENEZ JRNL TITL NAD BINDING INDUCES CONFORMATIONAL CHANGES IN RHO JRNL TITL 2 ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 EXOENZYME JRNL REF J.BIOL.CHEM. V. 277 30950 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12029083 JRNL DOI 10.1074/JBC.M201844200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 28722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6464 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1290009120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 290.0 REMARK 200 PH : 3.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 18.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % PEG 3350 W/W, 100MM LI2SO4, 80 REMARK 280 MM ACID CITRIC PH 3, PH 3.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.49850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.79800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.49850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.79800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION: LEU (177) CYS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 248 REMARK 465 ASN A 249 REMARK 465 PRO A 250 REMARK 465 LYS A 251 REMARK 465 ALA B 41 REMARK 465 TYR B 42 REMARK 465 SER B 43 REMARK 465 ALA B 247 REMARK 465 ILE B 248 REMARK 465 ASN B 249 REMARK 465 PRO B 250 REMARK 465 LYS B 251 REMARK 465 ALA C 41 REMARK 465 ALA D 41 REMARK 465 TYR D 42 REMARK 465 SER D 43 REMARK 465 ALA D 247 REMARK 465 ILE D 248 REMARK 465 ASN D 249 REMARK 465 PRO D 250 REMARK 465 LYS D 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 186 CD ARG A 186 NE -0.186 REMARK 500 ARG A 186 NE ARG A 186 CZ -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE A 183 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 ARG A 186 CG - CD - NE ANGL. DEV. = -18.3 DEGREES REMARK 500 ARG A 186 CD - NE - CZ ANGL. DEV. = 44.6 DEGREES REMARK 500 ARG A 186 NE - CZ - NH1 ANGL. DEV. = 18.5 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -16.6 DEGREES REMARK 500 ILE A 206 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 GLN A 236 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 GLN A 236 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 GLN A 236 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG B 186 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 186 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 2.64 -55.82 REMARK 500 GLN A 92 -81.53 -58.56 REMARK 500 ASN A 93 24.95 -72.90 REMARK 500 LYS A 94 67.47 35.65 REMARK 500 ASN A 98 36.23 -75.11 REMARK 500 ALA A 133 -9.41 -57.57 REMARK 500 LYS A 152 -5.40 -59.51 REMARK 500 PHE A 183 -143.31 -123.10 REMARK 500 ALA A 184 -26.26 65.94 REMARK 500 ARG A 186 127.97 -32.68 REMARK 500 LEU A 213 26.56 45.25 REMARK 500 ASP A 227 143.14 -171.16 REMARK 500 ASP A 233 -66.49 -137.52 REMARK 500 GLN A 236 163.92 163.21 REMARK 500 MET A 244 -38.02 -132.10 REMARK 500 SER B 82 81.36 -151.24 REMARK 500 GLN B 92 9.30 -62.62 REMARK 500 ASN B 93 16.88 -145.88 REMARK 500 LYS B 94 83.33 31.67 REMARK 500 ARG B 128 144.64 176.63 REMARK 500 THR B 175 -161.15 -106.05 REMARK 500 SER B 181 -17.93 -41.82 REMARK 500 GLN B 182 33.94 -88.10 REMARK 500 PHE B 183 -59.80 -133.79 REMARK 500 SER B 207 140.07 -173.74 REMARK 500 ALA C 57 -75.59 -48.90 REMARK 500 LYS C 64 -8.72 -57.99 REMARK 500 TYR C 66 -70.45 -59.79 REMARK 500 THR C 80 -9.45 -57.91 REMARK 500 SER C 82 53.60 -147.04 REMARK 500 ASN C 98 3.96 -62.21 REMARK 500 ARG C 128 149.09 -174.98 REMARK 500 SER C 146 95.03 -57.40 REMARK 500 ASN C 147 -34.77 162.90 REMARK 500 THR C 175 -157.41 -115.67 REMARK 500 PHE C 183 -152.35 -126.03 REMARK 500 ALA C 184 16.17 54.97 REMARK 500 LEU C 213 24.78 43.14 REMARK 500 GLU C 214 162.97 -47.35 REMARK 500 SER C 232 33.15 -78.73 REMARK 500 LYS C 235 143.57 -177.01 REMARK 500 PRO C 250 -176.81 -69.17 REMARK 500 TYR D 66 -99.77 -75.13 REMARK 500 SER D 69 -163.70 -68.70 REMARK 500 SER D 82 50.73 -113.75 REMARK 500 ASN D 103 -70.70 -57.23 REMARK 500 ASN D 147 -25.34 161.73 REMARK 500 THR D 175 -163.40 -116.62 REMARK 500 PHE D 183 -151.37 -90.05 REMARK 500 ALA D 184 -11.08 62.60 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 167 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL B 96 17.09 REMARK 500 PRO B 187 18.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1248 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 177 SG REMARK 620 2 MET A 215 SD 80.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B1247 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 177 SG REMARK 620 2 MET B 215 SD 98.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG C1252 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 177 SG REMARK 620 2 MET C 215 SD 75.7 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG D1247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G24 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUMBOTULINUM REMARK 900 RELATED ID: 1GZF RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF EXOENZYME C3 FROM CLOSTRIDIUMBOTULINUM REMARK 900 (WILD TYPE) IN COMPLEX WITH NAD DBREF 1GZE A 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZE B 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZE C 41 251 UNP P15879 ARC3_CBDP 41 251 DBREF 1GZE D 41 251 UNP P15879 ARC3_CBDP 41 251 SEQADV 1GZE CYS A 177 UNP P15879 LEU 177 ENGINEERED MUTATION SEQADV 1GZE CYS B 177 UNP P15879 LEU 177 ENGINEERED MUTATION SEQADV 1GZE CYS C 177 UNP P15879 LEU 177 ENGINEERED MUTATION SEQADV 1GZE CYS D 177 UNP P15879 LEU 177 ENGINEERED MUTATION SEQRES 1 A 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 A 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 A 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 A 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 A 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 A 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 A 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 A 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 A 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 A 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 A 211 GLY TYR ILE SER THR SER CYS MET ASN VAL SER GLN PHE SEQRES 12 A 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 A 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 A 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 A 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 A 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 A 211 ASN PRO LYS SEQRES 1 B 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 B 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 B 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 B 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 B 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 B 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 B 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 B 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 B 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 B 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 B 211 GLY TYR ILE SER THR SER CYS MET ASN VAL SER GLN PHE SEQRES 12 B 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 B 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 B 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 B 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 B 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 B 211 ASN PRO LYS SEQRES 1 C 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 C 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 C 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 C 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 C 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 C 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 C 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 C 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 C 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 C 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 C 211 GLY TYR ILE SER THR SER CYS MET ASN VAL SER GLN PHE SEQRES 12 C 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 C 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 C 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 C 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 C 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 C 211 ASN PRO LYS SEQRES 1 D 211 ALA TYR SER ASN THR TYR GLN GLU PHE THR ASN ILE ASP SEQRES 2 D 211 GLN ALA LYS ALA TRP GLY ASN ALA GLN TYR LYS LYS TYR SEQRES 3 D 211 GLY LEU SER LYS SER GLU LYS GLU ALA ILE VAL SER TYR SEQRES 4 D 211 THR LYS SER ALA SER GLU ILE ASN GLY LYS LEU ARG GLN SEQRES 5 D 211 ASN LYS GLY VAL ILE ASN GLY PHE PRO SER ASN LEU ILE SEQRES 6 D 211 LYS GLN VAL GLU LEU LEU ASP LYS SER PHE ASN LYS MET SEQRES 7 D 211 LYS THR PRO GLU ASN ILE MET LEU PHE ARG GLY ASP ASP SEQRES 8 D 211 PRO ALA TYR LEU GLY THR GLU PHE GLN ASN THR LEU LEU SEQRES 9 D 211 ASN SER ASN GLY THR ILE ASN LYS THR ALA PHE GLU LYS SEQRES 10 D 211 ALA LYS ALA LYS PHE LEU ASN LYS ASP ARG LEU GLU TYR SEQRES 11 D 211 GLY TYR ILE SER THR SER CYS MET ASN VAL SER GLN PHE SEQRES 12 D 211 ALA GLY ARG PRO ILE ILE THR LYS PHE LYS VAL ALA LYS SEQRES 13 D 211 GLY SER LYS ALA GLY TYR ILE ASP PRO ILE SER ALA PHE SEQRES 14 D 211 ALA GLY GLN LEU GLU MET LEU LEU PRO ARG HIS SER THR SEQRES 15 D 211 TYR HIS ILE ASP ASP MET ARG LEU SER SER ASP GLY LYS SEQRES 16 D 211 GLN ILE ILE ILE THR ALA THR MET MET GLY THR ALA ILE SEQRES 17 D 211 ASN PRO LYS HET HG A1248 1 HET HG B1247 1 HET HG C1252 1 HET HG D1247 1 HETNAM HG MERCURY (II) ION FORMUL 5 HG 4(HG 2+) FORMUL 9 HOH *43(H2 O) HELIX 1 1 ASN A 51 LYS A 65 1 15 HELIX 2 2 SER A 69 LYS A 81 1 13 HELIX 3 3 SER A 82 ASN A 93 1 12 HELIX 4 4 PRO A 101 PHE A 115 1 15 HELIX 5 5 ASP A 131 LEU A 135 5 5 HELIX 6 6 ASN A 151 LEU A 163 1 13 HELIX 7 7 ASN B 51 LYS B 64 1 14 HELIX 8 8 SER B 69 SER B 82 1 14 HELIX 9 9 ALA B 83 GLN B 92 1 10 HELIX 10 10 PRO B 101 PHE B 115 1 15 HELIX 11 11 ASP B 131 LEU B 135 5 5 HELIX 12 12 GLY B 136 ASN B 141 1 6 HELIX 13 13 ASN B 151 LEU B 163 1 13 HELIX 14 14 ASP B 204 SER B 207 5 4 HELIX 15 15 ASN C 51 GLY C 67 1 17 HELIX 16 16 SER C 69 SER C 82 1 14 HELIX 17 17 SER C 82 ASN C 93 1 12 HELIX 18 18 PRO C 101 PHE C 115 1 15 HELIX 19 19 ASP C 131 LEU C 135 5 5 HELIX 20 20 ASN C 151 LEU C 163 1 13 HELIX 21 21 ILE C 203 SER C 207 5 5 HELIX 22 22 ASN D 51 LYS D 64 1 14 HELIX 23 23 SER D 69 SER D 82 1 14 HELIX 24 24 SER D 82 ASN D 93 1 12 HELIX 25 25 PRO D 101 SER D 114 1 14 HELIX 26 26 PHE D 115 LYS D 117 5 3 HELIX 27 27 ASP D 131 LEU D 135 5 5 HELIX 28 28 GLY D 136 ASN D 141 1 6 HELIX 29 29 ASN D 151 LEU D 163 1 13 HELIX 30 30 ASP D 204 SER D 207 5 4 SHEET 1 AA 5 ILE A 124 ASP A 130 0 SHEET 2 AA 5 ILE A 188 VAL A 194 -1 O ILE A 188 N ASP A 130 SHEET 3 AA 5 ILE A 237 THR A 246 1 O ILE A 237 N ILE A 189 SHEET 4 AA 5 SER A 221 LEU A 230 -1 O THR A 222 N MET A 244 SHEET 5 AA 5 LYS A 165 LEU A 168 -1 O LYS A 165 N ILE A 225 SHEET 1 AB 3 THR A 175 SER A 176 0 SHEET 2 AB 3 GLU A 214 LEU A 216 -1 O MET A 215 N THR A 175 SHEET 3 AB 3 GLY A 201 TYR A 202 -1 O GLY A 201 N LEU A 216 SHEET 1 BA 7 ILE B 124 ASP B 130 0 SHEET 2 BA 7 ILE B 188 VAL B 194 -1 O ILE B 188 N ASP B 130 SHEET 3 BA 7 ILE B 237 GLY B 245 1 O ILE B 237 N ILE B 189 SHEET 4 BA 7 GLU B 214 ASP B 227 -1 O THR B 222 N MET B 244 SHEET 5 BA 7 ASP B 166 SER B 176 -1 O ARG B 167 N TYR B 223 SHEET 6 BA 7 ILE B 124 ASP B 130 -1 O PHE B 127 N SER B 176 SHEET 7 BA 7 ILE B 124 ASP B 130 0 SHEET 1 CA 5 ILE C 124 ASP C 130 0 SHEET 2 CA 5 ILE C 188 VAL C 194 -1 O ILE C 188 N ASP C 130 SHEET 3 CA 5 ILE C 237 THR C 246 1 O ILE C 237 N ILE C 189 SHEET 4 CA 5 SER C 221 ARG C 229 -1 O THR C 222 N MET C 244 SHEET 5 CA 5 ASP C 166 GLU C 169 -1 O ARG C 167 N TYR C 223 SHEET 1 CB 2 ILE C 173 SER C 176 0 SHEET 2 CB 2 GLU C 214 LEU C 217 -1 O MET C 215 N THR C 175 SHEET 1 DA 5 ILE D 124 ASP D 130 0 SHEET 2 DA 5 ILE D 188 VAL D 194 -1 O ILE D 188 N ASP D 130 SHEET 3 DA 5 ILE D 237 MET D 243 1 O ILE D 237 N ILE D 189 SHEET 4 DA 5 SER D 221 LEU D 230 -1 O HIS D 224 N THR D 242 SHEET 5 DA 5 ASP D 166 GLU D 169 -1 O ARG D 167 N TYR D 223 SHEET 1 DB 3 ILE D 173 SER D 176 0 SHEET 2 DB 3 GLU D 214 LEU D 217 -1 O MET D 215 N THR D 175 SHEET 3 DB 3 GLY D 201 TYR D 202 -1 O GLY D 201 N LEU D 216 LINK SG CYS A 177 HG HG A1248 1555 1555 2.11 LINK SD MET A 215 HG HG A1248 1555 1555 2.69 LINK SG CYS B 177 HG HG B1247 1555 1555 2.26 LINK SD MET B 215 HG HG B1247 1555 1555 3.43 LINK SG CYS C 177 HG HG C1252 1555 1555 2.43 LINK SD MET C 215 HG HG C1252 1555 1555 3.33 LINK SG CYS D 177 HG HG D1247 1555 1555 2.27 SITE 1 AC1 3 PHE A 49 CYS A 177 MET A 215 SITE 1 AC2 3 PHE B 49 CYS B 177 MET B 215 SITE 1 AC3 3 PHE C 49 CYS C 177 MET C 215 SITE 1 AC4 2 PHE D 49 CYS D 177 CRYST1 108.997 75.596 123.465 90.00 102.37 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009174 0.000000 0.002012 0.00000 SCALE2 0.000000 0.013228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008292 0.00000