HEADER TRANSFERASE 11-JUN-02 1H06 OBSLTE 04-MAY-04 1H06 1V1K TITLE CDK2 IN COMPLEX WITH A DISUBSTITUTED 4, 6-BIS ANILINO TITLE 2 PYRIMIDINE CDK4 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P33 PROTEIN KINASE; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS SERINE/THREONINE-PROTEIN KINASE,MITOSIS,TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.BEATTIE,G.A.BREAULT,R.P.A.ELLSTON,S.GREEN,P.J.JEWSBURY, AUTHOR 2 C.J.MIDGLEY,R.T.NAVEN,C.A.MINSHULL,R.A.PAUPTIT,J.A.TUCKER, AUTHOR 3 J.E.PEASE REVDAT 3 04-MAY-04 1H06 1 OBSLTE REVDAT 2 04-SEP-03 1H06 1 JRNL REVDAT 1 11-JUL-03 1H06 0 JRNL AUTH J.F.BEATTIE,G.A.BREAULT,R.P.A.ELLSTON,S.GREEN, JRNL AUTH 2 P.J.JEWSBURY,C.J.MIDGLEY,R.T.NAVEN,C.A.MINSHULL, JRNL AUTH 3 R.A.PAUPTIT,J.A.TUCKER,J.E.PEASE JRNL TITL CYCLIN-DEPENDENT KINASE 4 INHIBITORS AS A JRNL TITL 2 TREATMENT FOR CANCER. PART 1: IDENTIFICATION AND JRNL TITL 3 OPTIMISATION OF SUBSTITUTED 4,6-BIS ANILINO JRNL TITL 4 PYRIMIDINES JRNL REF BIOORG.MED.CHEM.LETT. V. 13 2955 2003 JRNL REFN ASTM BMCLE8 UK ISSN 0960-894X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.SCHULZE-GAHMEN,H.DE BONDT,S.-H.KIM REMARK 1 TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF HUMAN REMARK 1 TITL 2 CYCLIN-DEPENDENT KINASE 2 WITH AND WITHOUT ATP: REMARK 1 TITL 3 BOUND WATERS AND NATURAL LIGAND AS A GUIDE FOR REMARK 1 TITL 4 INHIBITOR DESIGN REMARK 1 REF J.MED.CHEM. V. 39 4540 1996 REMARK 1 REFN ASTM JMCMAR US ISSN 0022-2623 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,MOLECULAR REMARK 3 : SIMULATIONS (BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1325311.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 11788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 594 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1785 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 83 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 25.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.01 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.930 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 38 - 46, AND 151 - 162 ARE REMARK 3 NOT VISIBLE IN THE ELECTRON DENSITY MAP. REMARK 4 REMARK 4 1H06 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 13-JUN-2002. REMARK 100 THE EBI ID CODE IS EBI-9950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-1997 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 BEAMLINE PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11954 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 37.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.67100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.91900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.46600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.91900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.67100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.46600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLU A 42 REMARK 465 GLY A 43 REMARK 465 VAL A 44 REMARK 465 PRO A 45 REMARK 465 SER A 46 REMARK 465 ALA A 151 REMARK 465 PHE A 152 REMARK 465 GLY A 153 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 VAL A 156 REMARK 465 ARG A 157 REMARK 465 THR A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 HIS A 161 REMARK 465 GLU A 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 THR A 14 OG1 CG2 REMARK 470 TYR A 15 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 164 CG1 CG2 REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 C1 3FP A 299 C1 3FQ A 300 0.00 REMARK 500 N1 3FP A 299 N1 3FQ A 300 0.00 REMARK 500 C2 3FP A 299 C2 3FQ A 300 0.00 REMARK 500 C7 3FP A 299 C7 3FQ A 300 0.00 REMARK 500 C6 3FP A 299 C6 3FQ A 300 0.00 REMARK 500 C5 3FP A 299 C5 3FQ A 300 0.00 REMARK 500 C4 3FP A 299 C4 3FQ A 300 0.00 REMARK 500 C3 3FP A 299 C3 3FQ A 300 0.00 REMARK 500 C11 3FP A 299 C11 3FQ A 300 0.00 REMARK 500 C10 3FP A 299 C10 3FQ A 300 0.00 REMARK 500 C9 3FP A 299 C9 3FQ A 300 0.00 REMARK 500 C8 3FP A 299 C8 3FQ A 300 0.00 REMARK 500 C12 3FP A 299 C12 3FQ A 300 0.00 REMARK 500 C16 3FP A 299 C16 3FQ A 300 0.00 REMARK 500 C14 3FP A 299 C14 3FQ A 300 0.00 REMARK 500 C13 3FP A 299 C13 3FQ A 300 0.00 REMARK 500 C15 3FP A 299 C15 3FQ A 300 0.00 REMARK 500 C 3FP A 299 C 3FQ A 300 0.00 REMARK 500 N 3FP A 299 N 3FQ A 300 0.00 REMARK 500 N2 3FP A 299 N2 3FQ A 300 0.00 REMARK 500 F1 3FP A 299 F1 3FQ A 300 0.00 REMARK 500 N3 3FP A 299 N3 3FQ A 300 0.00 REMARK 500 O 3FP A 299 O 3FQ A 300 0.00 REMARK 500 C21 3FP A 299 C21 3FQ A 300 0.00 REMARK 500 F2 3FP A 299 F2 3FQ A 300 0.00 REMARK 500 F3 3FP A 299 F3 3FQ A 300 0.00 REMARK 500 F4 3FP A 299 F4 3FQ A 300 0.00 REMARK 500 C17 3FP A 299 C17 3FQ A 300 0.15 REMARK 500 O1 3FP A 299 C18 3FQ A 300 0.86 REMARK 500 C18 3FP A 299 O1 3FQ A 300 1.02 REMARK 500 C21 3FP A 299 F2 3FQ A 300 1.29 REMARK 500 F2 3FP A 299 C21 3FQ A 300 1.29 REMARK 500 N1 3FP A 299 C3 3FQ A 300 1.35 REMARK 500 N1 3FP A 299 C 3FQ A 300 1.35 REMARK 500 C3 3FP A 299 N1 3FQ A 300 1.35 REMARK 500 C 3FP A 299 N1 3FQ A 300 1.35 REMARK 500 C 3FP A 299 N 3FQ A 300 1.35 REMARK 500 N 3FP A 299 C 3FQ A 300 1.35 REMARK 500 C1 3FP A 299 N 3FQ A 300 1.36 REMARK 500 N 3FP A 299 C1 3FQ A 300 1.36 REMARK 500 C5 3FP A 299 F1 3FQ A 300 1.37 REMARK 500 F1 3FP A 299 C5 3FQ A 300 1.37 REMARK 500 C21 3FP A 299 F4 3FQ A 300 1.38 REMARK 500 F4 3FP A 299 C21 3FQ A 300 1.38 REMARK 500 C7 3FP A 299 C6 3FQ A 300 1.39 REMARK 500 C6 3FP A 299 C7 3FQ A 300 1.39 REMARK 500 C6 3FP A 299 C5 3FQ A 300 1.39 REMARK 500 C5 3FP A 299 C6 3FQ A 300 1.39 REMARK 500 C11 3FP A 299 C12 3FQ A 300 1.40 REMARK 500 C12 3FP A 299 C11 3FQ A 300 1.40 REMARK 500 C13 3FP A 299 O 3FQ A 300 1.40 REMARK 500 O 3FP A 299 C13 3FQ A 300 1.40 REMARK 500 C21 3FP A 299 F3 3FQ A 300 1.40 REMARK 500 F3 3FP A 299 C21 3FQ A 300 1.40 REMARK 500 C5 3FP A 299 C4 3FQ A 300 1.41 REMARK 500 C4 3FP A 299 C5 3FQ A 300 1.41 REMARK 500 C12 3FP A 299 C13 3FQ A 300 1.42 REMARK 500 C13 3FP A 299 C12 3FQ A 300 1.42 REMARK 500 C18 3FP A 299 C17 3FQ A 300 1.42 REMARK 500 C4 3FP A 299 C9 3FQ A 300 1.43 REMARK 500 C11 3FP A 299 C10 3FQ A 300 1.43 REMARK 500 C10 3FP A 299 C11 3FQ A 300 1.43 REMARK 500 C9 3FP A 299 C4 3FQ A 300 1.43 REMARK 500 C14 3FP A 299 C13 3FQ A 300 1.43 REMARK 500 C14 3FP A 299 C15 3FQ A 300 1.43 REMARK 500 C13 3FP A 299 C14 3FQ A 300 1.43 REMARK 500 C15 3FP A 299 C14 3FQ A 300 1.43 REMARK 500 C2 3FP A 299 C3 3FQ A 300 1.44 REMARK 500 C3 3FP A 299 C2 3FQ A 300 1.44 REMARK 500 C10 3FP A 299 C15 3FQ A 300 1.44 REMARK 500 C15 3FP A 299 C10 3FQ A 300 1.44 REMARK 500 C17 3FP A 299 C18 3FQ A 300 1.44 REMARK 500 C1 3FP A 299 C2 3FQ A 300 1.46 REMARK 500 C2 3FP A 299 C1 3FQ A 300 1.46 REMARK 500 C7 3FP A 299 C8 3FQ A 300 1.46 REMARK 500 C8 3FP A 299 C7 3FQ A 300 1.46 REMARK 500 C16 3FP A 299 O 3FQ A 300 1.46 REMARK 500 O 3FP A 299 C16 3FQ A 300 1.46 REMARK 500 C4 3FP A 299 N2 3FQ A 300 1.47 REMARK 500 C3 3FP A 299 N3 3FQ A 300 1.47 REMARK 500 N2 3FP A 299 C4 3FQ A 300 1.47 REMARK 500 N3 3FP A 299 C3 3FQ A 300 1.47 REMARK 500 C10 3FP A 299 N3 3FQ A 300 1.48 REMARK 500 C9 3FP A 299 C8 3FQ A 300 1.48 REMARK 500 C8 3FP A 299 C9 3FQ A 300 1.48 REMARK 500 N3 3FP A 299 C10 3FQ A 300 1.48 REMARK 500 C1 3FP A 299 N2 3FQ A 300 1.49 REMARK 500 N2 3FP A 299 C1 3FQ A 300 1.49 REMARK 500 O1 3FP A 299 C17 3FQ A 300 1.49 REMARK 500 C17 3FP A 299 O1 3FQ A 300 1.55 REMARK 500 C8 3FP A 299 C21 3FQ A 300 1.56 REMARK 500 C16 3FP A 299 C17 3FQ A 300 1.56 REMARK 500 C21 3FP A 299 C8 3FQ A 300 1.56 REMARK 500 C17 3FP A 299 C16 3FQ A 300 1.56 REMARK 500 O1 3FP A 299 N4 3FQ A 300 1.59 REMARK 500 N4 3FP A 299 O1 3FQ A 300 1.68 REMARK 500 O1 3FP A 299 O1 3FQ A 300 1.92 REMARK 500 C20 3FP A 299 O1 3FQ A 300 1.99 REMARK 500 F2 3FP A 299 F4 3FQ A 300 2.02 REMARK 500 F4 3FP A 299 F2 3FQ A 300 2.02 REMARK 500 F2 3FP A 299 F3 3FQ A 300 2.16 REMARK 500 F3 3FP A 299 F2 3FQ A 300 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 55 CG LEU A 55 CD1 -0.042 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 20 N - CA - C ANGL. DEV. =-11.6 DEGREES REMARK 500 ASN A 62 N - CA - C ANGL. DEV. = 7.8 DEGREES REMARK 500 LEU A 66 N - CA - C ANGL. DEV. = -9.0 DEGREES REMARK 500 GLU A 81 N - CA - C ANGL. DEV. = -9.6 DEGREES REMARK 500 HIS A 84 N - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 126 N - CA - C ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU A 133 N - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 LEU A 143 CA - CB - CG ANGL. DEV. = -7.5 DEGREES REMARK 600 REMARK 600 HETEROGEN REMARK 600 ACETYL GROUP ATTACHED TO N-TERMINAL METHIONINE BY AN AMIDE. REMARK 600 ENTRY CONTAINS TWO HET COMPOUNDS, 3FP AND 3FQ, REPRESENTING REMARK 600 A RACEMIC MIXTURE OF THE BOUND LIGAND. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: 3FP REMARK 800 SITE_DESCRIPTION: 3FP BINDING SITE FOR CHAIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: 3FQ REMARK 800 SITE_DESCRIPTION: 3FQ BINDING SITE FOR CHAIN A REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AQ1 RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR STAUROSPORINE REMARK 900 RELATED ID: 1B38 RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 REMARK 900 RELATED ID: 1B39 RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 PHOSPHORYLATED REMARK 900 ON THR 160 REMARK 900 RELATED ID: 1BUH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CDK2 KINASE REMARK 900 COMPLEX WITHCELL CYCLE-REGULATORY PROTEIN REMARK 900 CKSHS1 REMARK 900 RELATED ID: 1CKP RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR PURVALANOL B REMARK 900 RELATED ID: 1DI8 RELATED DB: PDB REMARK 900 THE STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 REMARK 900 (CDK2) IN COMPLEX WITH 4-[3- REMARK 900 HYDROXYANILINO]-6,7-DIMETHOXYQUINAZOLINE REMARK 900 RELATED ID: 1DM2 RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR HYMENIALDISINE REMARK 900 RELATED ID: 1E1V RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR NU2058 REMARK 900 RELATED ID: 1E1X RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR NU6027 REMARK 900 RELATED ID: 1E9H RELATED DB: PDB REMARK 900 THR 160 PHOSPHORYLATED CDK2 - HUMAN CYCLIN REMARK 900 A3 COMPLEX WITH THE INHIBITOR INDIRUBIN-5- REMARK 900 SULPHONATE BOUND REMARK 900 RELATED ID: 1F5Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MURINE GAMMA HERPESVIRUS REMARK 900 CYCLIN COMPLEXED TO HUMAN CYCLIN DEPENDANT REMARK 900 KINASE 2 REMARK 900 RELATED ID: 1FIN RELATED DB: PDB REMARK 900 CYCLIN A - CYCLIN-DEPENDENT KINASE 2 COMPLEX REMARK 900 RELATED ID: 1FQ1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF KINASE ASSOCIATED REMARK 900 PHOSPHATASE (KAP) INCOMPLEX WITH PHOSPHO-CDK2 REMARK 900 RELATED ID: 1FVT RELATED DB: PDB REMARK 900 THE STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 REMARK 900 (CDK2) INCOMPLEX WITH AN OXINDOLE INHIBITOR REMARK 900 RELATED ID: 1FVV RELATED DB: PDB REMARK 900 THE STRUCTURE OF CDK2/CYCLIN A IN COMPLEX REMARK 900 WITH AN OXINDOLEINHIBITOR REMARK 900 RELATED ID: 1G5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT REMARK 900 KINASE 2 (CDK2)IN COMPLEX WITH THE REMARK 900 INHIBITOR H717 REMARK 900 RELATED ID: 1GIH RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE CDK4INHIBITOR REMARK 900 RELATED ID: 1GII RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE CDK4INHIBITOR REMARK 900 RELATED ID: 1GIJ RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE CDK4INHIBITOR REMARK 900 RELATED ID: 1GY3 RELATED DB: PDB REMARK 900 PCDK2/CYCLIN A IN COMPLEX WITH MGADP, REMARK 900 NITRATE AND PEPTIDE SUBSTRATE REMARK 900 RELATED ID: 1GZ8 RELATED DB: PDB REMARK 900 HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED REMARK 900 WITH THE INHIBITOR 2-AMINO-6-(3'-METHYL- REMARK 900 2'-OXO)BUTOXYPURINE REMARK 900 RELATED ID: 1H00 RELATED DB: PDB REMARK 900 CDK2 IN COMPLEX WITH A DISUBSTITUTED 4, 6 REMARK 900 -BIS ANILINO PYRIMIDINE CDK4 INHIBITOR REMARK 900 RELATED ID: 1H01 RELATED DB: PDB REMARK 900 CDK2 IN COMPLEX WITH A DISUBSTITUTED 2, 4 REMARK 900 -BIS ANILINO PYRIMIDINE CDK4 INHIBITOR REMARK 900 RELATED ID: 1H07 RELATED DB: PDB REMARK 900 CDK2 IN COMPLEX WITH A DISUBSTITUTED 4, 6 REMARK 900 -BIS ANILINO PYRIMIDINE CDK4 INHIBITOR REMARK 900 RELATED ID: 1H08 RELATED DB: PDB REMARK 900 CDK2 IN COMPLEX WITH A DISUBSTITUTED 4, 6 REMARK 900 -BIS ANILINO PYRIMIDINE CDK4 INHIBITOR REMARK 900 RELATED ID: 1HCK RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 REMARK 900 RELATED ID: 1HCL RELATED DB: PDB REMARK 900 HUMAN CYCLIN-DEPENDENT KINASE 2 REMARK 900 RELATED ID: 1JST RELATED DB: PDB REMARK 900 PHOSPHORYLATED CYCLIN-DEPENDENT KINASE-2 BOUND REMARK 900 TO CYCLIN A REMARK 900 RELATED ID: 1JSU RELATED DB: PDB REMARK 900 P27(KIP1)/CYCLIN A/CDK2 COMPLEX REMARK 900 RELATED ID: 1JSV RELATED DB: PDB REMARK 900 THE STRUCTURE OF CYCLIN-DEPENDENT KINASE 2 REMARK 900 (CDK2) INCOMPLEX WITH 4-[(6-AMINO-4- REMARK 900 PYRIMIDINYL)AMINO]BENZENESULFONAMIDE REMARK 900 RELATED ID: 1JVP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CDK2 ( REMARK 900 UNPHOSPHORYLATED) INCOMPLEX WITH PKF049-365 REMARK 900 RELATED ID: 1QMZ RELATED DB: PDB REMARK 900 PHOSPHORYLATED CDK2-CYCLYIN A-SUBSTRATE REMARK 900 PEPTIDE COMPLEX DBREF 1H06 A 0 0 PDB 1H06 1H06 0 0 DBREF 1H06 A 1 298 UNP P24941 CDK2_HUMAN 1 298 SEQRES 1 A 299 ACE MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU SEQRES 2 A 299 GLY THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU SEQRES 3 A 299 THR GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP SEQRES 4 A 299 THR GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU SEQRES 5 A 299 ILE SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL SEQRES 6 A 299 LYS LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR SEQRES 7 A 299 LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE SEQRES 8 A 299 MET ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU SEQRES 9 A 299 ILE LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA SEQRES 10 A 299 PHE CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS SEQRES 11 A 299 PRO GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS SEQRES 12 A 299 LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO SEQRES 13 A 299 VAL ARG THR TYR THR HIS GLU VAL VAL THR LEU TRP TYR SEQRES 14 A 299 ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER SEQRES 15 A 299 THR ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA SEQRES 16 A 299 GLU MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER SEQRES 17 A 299 GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY SEQRES 18 A 299 THR PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET SEQRES 19 A 299 PRO ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN SEQRES 20 A 299 ASP PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY SEQRES 21 A 299 ARG SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN SEQRES 22 A 299 LYS ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE SEQRES 23 A 299 PHE GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU HET ACE A 0 3 HET 3FP A 299 33 HET 3FQ A 300 33 HETNAM ACE ACETYL GROUP HETNAM 3FP (2R)-1-(DIMETHYLAMINO)-3-{4-[(6-{[2-FLUORO-5- HETNAM 2 3FP (TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-4-YL) HETNAM 3 3FP AMINO]PHENOXY}PROPAN-2-OL HETNAM 3FQ (2S)-1-(DIMETHYLAMINO)-3-{4-[(6-{[2-FLUORO-5- HETNAM 2 3FQ (TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-4-YL) HETNAM 3 3FQ AMINO]PHENOXY}PROPAN-2-OL HETSYN 3FP 1-(DIMETHYLAMINO)-3-{4-[(6-{[2-FLUORO-5- HETSYN 2 3FP (TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-4-YL) HETSYN 3 3FP AMINO]PHENOXY}PROPAN-2-OL HETSYN 3FQ 1-(DIMETHYLAMINO)-3-{4-[(6-{[2-FLUORO-5- HETSYN 2 3FQ (TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-4-YL) HETSYN 3 3FQ AMINO]PHENOXY}PROPAN-2-OL FORMUL 1 ACE C2 H4 O FORMUL 2 3FP C22 H23 F4 N5 O2 FORMUL 2 3FQ C22 H25 F4 N5 O3 FORMUL 3 HOH *101(H2 O1) HELIX 1 1 THR A 47 LYS A 56 1 10 HELIX 2 2 LEU A 87 SER A 94 1 8 HELIX 3 3 PRO A 100 SER A 120 1 21 HELIX 4 4 LYS A 129 GLN A 131 5 3 HELIX 5 5 ALA A 170 LEU A 175 1 6 HELIX 6 6 THR A 182 ARG A 199 1 18 HELIX 7 7 SER A 207 GLY A 220 1 14 HELIX 8 8 GLY A 229 MET A 233 5 5 HELIX 9 9 ASP A 247 VAL A 251 5 5 HELIX 10 10 ASP A 256 LEU A 267 1 12 HELIX 11 11 SER A 276 LEU A 281 1 6 HELIX 12 12 ALA A 282 GLN A 287 5 6 SHEET 1 AA 5 PHE A 4 GLY A 13 0 SHEET 2 AA 5 GLY A 16 ASN A 23 -1 O GLY A 16 N GLY A 13 SHEET 3 AA 5 VAL A 29 ILE A 35 -1 O VAL A 30 N ALA A 21 SHEET 4 AA 5 LYS A 75 GLU A 81 -1 O LEU A 76 N ILE A 35 SHEET 5 AA 5 LEU A 66 THR A 72 -1 N LEU A 67 O VAL A 79 SHEET 1 AB 3 GLN A 85 ASP A 86 0 SHEET 2 AB 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 AB 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 LINK C ACE A 0 N MET A 1 SITE 1 3FP 15 ILE A 10 GLY A 11 GLU A 12 GLY A 13 SITE 2 3FP 15 ALA A 31 GLU A 81 LEU A 83 ASP A 86 SITE 3 3FP 15 LYS A 89 GLN A 131 ASN A 132 LEU A 134 SITE 4 3FP 15 ALA A 144 ASP A 145 HOH Z 101 SITE 1 3FQ 15 ILE A 10 GLY A 11 GLU A 12 GLY A 13 SITE 2 3FQ 15 ALA A 31 GLU A 81 LEU A 83 ASP A 86 SITE 3 3FQ 15 LYS A 88 GLN A 131 ASN A 132 LEU A 134 SITE 4 3FQ 15 ALA A 144 ASP A 145 HOH Z 101 CRYST1 53.342 72.932 73.838 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013543 0.00000 HETATM 1 C ACE A 0 27.761 -20.621 16.601 1.00 37.80 C HETATM 2 O ACE A 0 26.786 -21.168 17.127 1.00 38.16 O HETATM 3 CH3 ACE A 0 29.013 -20.347 17.392 1.00 36.61 C