HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUN-02 1H0G TITLE COMPLEX OF A CHITINASE WITH THE NATURAL PRODUCT CYCLOPENTAPEPTIDE TITLE 2 ARGADIN FROM CLONOSTACHYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.14; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: BOUND TO ARGADIN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ARGADIN; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 8 ORGANISM_TAXID: 615; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, CHITIN DEGRADATION, ARGADIN, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.HOUSTON,K.SHIOMI,N.ARAI,S.OMURA,M.G.PETER,A.TURBERG,B.SYNSTAD, AUTHOR 2 V.G.H.EIJSINK,D.M.F.AALTEN REVDAT 13 13-DEC-23 1H0G 1 REMARK REVDAT 12 15-NOV-23 1H0G 1 REMARK LINK ATOM REVDAT 11 24-APR-19 1H0G 1 SEQRES REVDAT 10 04-JUL-18 1H0G 1 COMPND SEQRES HET HETNAM REVDAT 10 2 1 FORMUL LINK ATOM REVDAT 9 27-JUN-18 1H0G 1 COMPND SOURCE SEQRES HET REVDAT 9 2 1 HETNAM FORMUL LINK ATOM REVDAT 8 16-SEP-15 1H0G 1 SOURCE REMARK SEQRES HET REVDAT 8 2 1 HETNAM FORMUL LINK ATOM REVDAT 8 3 1 TER HETATM MASTER REVDAT 7 13-JUL-11 1H0G 1 VERSN REVDAT 6 24-FEB-09 1H0G 1 VERSN REVDAT 5 17-MAR-05 1H0G 1 AUTHOR JRNL REVDAT 4 01-AUG-03 1H0G 1 REMARK ATOM HETATM TER REVDAT 4 2 1 CONECT REVDAT 3 08-AUG-02 1H0G 1 FORMUL REVDAT 2 11-JUL-02 1H0G 1 COMPND SOURCE AUTHOR JRNL REVDAT 2 2 1 REMARK DBREF SEQRES HET REVDAT 2 3 1 HETNAM FORMUL LINK SITE REVDAT 2 4 1 HETATM ATOM TER CONECT REVDAT 1 27-JUN-02 1H0G 0 JRNL AUTH D.R.HOUSTON,K.SHIOMI,N.ARAI,S.OMURA,M.G.PETER,A.TURBERG, JRNL AUTH 2 B.SYNSTAD,V.G.H.EIJSINK,D.M.F.VAN AALTEN JRNL TITL HIGH RESOLUTION INHIBITED COMPLEXES OF A CHITINASE WITH JRNL TITL 2 NATURAL PRODUCT CYCLOPENTAPEPTIDES - PEPTIDE MIMICRY OF A JRNL TITL 3 CARBOHYDRATE SUBSTRATE JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 9127 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12093900 JRNL DOI 10.1073/PNAS.132060599 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2862746.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 69911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5741 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.041 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.69000 REMARK 3 B22 (A**2) : 16.68000 REMARK 3 B33 (A**2) : -13.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.600 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.340 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ARGADIN.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ARGADIN.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1290009985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953758 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1E15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL 0.1M HEPES PH 7, 1.4M REMARK 280 AMMONIUM SULPHATE, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.53150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.89200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.46700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.89200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.53150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.46700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ARGADIN IS CYCLIC PEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ARGADIN REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 121 OG1 CG2 REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 ALA A 499 CA C O CB REMARK 470 THR B 121 OG1 CG2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 356 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 352 N GLY A 354 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 142 62.60 -116.98 REMARK 500 LEU A 177 76.07 -152.98 REMARK 500 ALA A 228 46.29 -156.30 REMARK 500 ALA A 234 -18.15 -47.92 REMARK 500 ASN A 303 47.93 -147.15 REMARK 500 PRO A 319 48.62 -79.70 REMARK 500 ASP A 336 116.76 -162.44 REMARK 500 TYR A 353 -1.20 29.11 REMARK 500 SER A 490 1.77 -64.74 REMARK 500 VAL A 498 -63.66 65.45 REMARK 500 ASP B 25 86.69 -155.65 REMARK 500 ASP B 142 64.76 -115.28 REMARK 500 ALA B 148 -115.90 38.01 REMARK 500 LEU B 177 75.85 -161.96 REMARK 500 ALA B 228 49.19 -147.94 REMARK 500 SER B 320 -172.51 -65.26 REMARK 500 ASP B 336 112.96 -165.29 REMARK 500 PRO B 445 -0.12 -54.88 REMARK 500 ASN B 447 40.50 -155.61 REMARK 500 ASP B 489 -158.74 38.68 REMARK 500 HSE C 3 -107.01 -141.91 REMARK 500 HSE D 3 -107.28 -145.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2033 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2309 DISTANCE = 6.40 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF ARGADIN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF ARGADIN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H0I RELATED DB: PDB REMARK 900 COMPLEX OF A CHITINASE WITH THE NATURAL PRODUCT CYCLOPENTAPEPTIDE REMARK 900 ARGIFIN FROM GLIOCLADIU DBREF 1H0G A 1 499 UNP P11797 CHIB_SERMA 1 499 DBREF 1H0G B 1 499 UNP P11797 CHIB_SERMA 1 499 DBREF 1H0G C 1 5 PDB 1H0G 1H0G 1 5 DBREF 1H0G D 1 5 PDB 1H0G 1H0G 1 5 SEQADV 1H0G SER A 119 UNP P11797 ALA 119 CONFLICT SEQADV 1H0G THR A 171 UNP P11797 ALA 171 CONFLICT SEQADV 1H0G VAL A 223 UNP P11797 ILE 223 CONFLICT SEQADV 1H0G SER A 320 UNP P11797 ASN 320 CONFLICT SEQADV 1H0G THR A 321 UNP P11797 ALA 321 CONFLICT SEQADV 1H0G GLU A 329 UNP P11797 ASP 329 CONFLICT SEQADV 1H0G VAL A 498 UNP P11797 LEU 498 CONFLICT SEQADV 1H0G SER B 119 UNP P11797 ALA 119 CONFLICT SEQADV 1H0G THR B 171 UNP P11797 ALA 171 CONFLICT SEQADV 1H0G VAL B 223 UNP P11797 ILE 223 CONFLICT SEQADV 1H0G SER B 320 UNP P11797 ASN 320 CONFLICT SEQADV 1H0G THR B 321 UNP P11797 ALA 321 CONFLICT SEQADV 1H0G GLU B 329 UNP P11797 ASP 329 CONFLICT SEQADV 1H0G VAL B 498 UNP P11797 LEU 498 CONFLICT SEQRES 1 A 499 MET SER THR ARG LYS ALA VAL ILE GLY TYR TYR PHE ILE SEQRES 2 A 499 PRO THR ASN GLN ILE ASN ASN TYR THR GLU THR ASP THR SEQRES 3 A 499 SER VAL VAL PRO PHE PRO VAL SER ASN ILE THR PRO ALA SEQRES 4 A 499 LYS ALA LYS GLN LEU THR HIS ILE ASN PHE SER PHE LEU SEQRES 5 A 499 ASP ILE ASN SER ASN LEU GLU CYS ALA TRP ASP PRO ALA SEQRES 6 A 499 THR ASN ASP ALA LYS ALA ARG ASP VAL VAL ASN ARG LEU SEQRES 7 A 499 THR ALA LEU LYS ALA HIS ASN PRO SER LEU ARG ILE MET SEQRES 8 A 499 PHE SER ILE GLY GLY TRP TYR TYR SER ASN ASP LEU GLY SEQRES 9 A 499 VAL SER HIS ALA ASN TYR VAL ASN ALA VAL LYS THR PRO SEQRES 10 A 499 ALA SER ARG THR LYS PHE ALA GLN SER CYS VAL ARG ILE SEQRES 11 A 499 MET LYS ASP TYR GLY PHE ASP GLY VAL ASP ILE ASP TRP SEQRES 12 A 499 GLU TYR PRO GLN ALA ALA GLU VAL ASP GLY PHE ILE ALA SEQRES 13 A 499 ALA LEU GLN GLU ILE ARG THR LEU LEU ASN GLN GLN THR SEQRES 14 A 499 ILE THR ASP GLY ARG GLN ALA LEU PRO TYR GLN LEU THR SEQRES 15 A 499 ILE ALA GLY ALA GLY GLY ALA PHE PHE LEU SER ARG TYR SEQRES 16 A 499 TYR SER LYS LEU ALA GLN ILE VAL ALA PRO LEU ASP TYR SEQRES 17 A 499 ILE ASN LEU MET THR TYR ASP LEU ALA GLY PRO TRP GLU SEQRES 18 A 499 LYS VAL THR ASN HIS GLN ALA ALA LEU PHE GLY ASP ALA SEQRES 19 A 499 ALA GLY PRO THR PHE TYR ASN ALA LEU ARG GLU ALA ASN SEQRES 20 A 499 LEU GLY TRP SER TRP GLU GLU LEU THR ARG ALA PHE PRO SEQRES 21 A 499 SER PRO PHE SER LEU THR VAL ASP ALA ALA VAL GLN GLN SEQRES 22 A 499 HIS LEU MET MET GLU GLY VAL PRO SER ALA LYS ILE VAL SEQRES 23 A 499 MET GLY VAL PRO PHE TYR GLY ARG ALA PHE LYS GLY VAL SEQRES 24 A 499 SER GLY GLY ASN GLY GLY GLN TYR SER SER HIS SER THR SEQRES 25 A 499 PRO GLY GLU ASP PRO TYR PRO SER THR ASP TYR TRP LEU SEQRES 26 A 499 VAL GLY CYS GLU GLU CYS VAL ARG ASP LYS ASP PRO ARG SEQRES 27 A 499 ILE ALA SER TYR ARG GLN LEU GLU GLN MET LEU GLN GLY SEQRES 28 A 499 ASN TYR GLY TYR GLN ARG LEU TRP ASN ASP LYS THR LYS SEQRES 29 A 499 THR PRO TYR LEU TYR HIS ALA GLN ASN GLY LEU PHE VAL SEQRES 30 A 499 THR TYR ASP ASP ALA GLU SER PHE LYS TYR LYS ALA LYS SEQRES 31 A 499 TYR ILE LYS GLN GLN GLN LEU GLY GLY VAL MET PHE TRP SEQRES 32 A 499 HIS LEU GLY GLN ASP ASN ARG ASN GLY ASP LEU LEU ALA SEQRES 33 A 499 ALA LEU ASP ARG TYR PHE ASN ALA ALA ASP TYR ASP ASP SEQRES 34 A 499 SER GLN LEU ASP MET GLY THR GLY LEU ARG TYR THR GLY SEQRES 35 A 499 VAL GLY PRO GLY ASN LEU PRO ILE MET THR ALA PRO ALA SEQRES 36 A 499 TYR VAL PRO GLY THR THR TYR ALA GLN GLY ALA LEU VAL SEQRES 37 A 499 SER TYR GLN GLY TYR VAL TRP GLN THR LYS TRP GLY TYR SEQRES 38 A 499 ILE THR SER ALA PRO GLY SER ASP SER ALA TRP LEU LYS SEQRES 39 A 499 VAL GLY ARG VAL ALA SEQRES 1 B 499 MET SER THR ARG LYS ALA VAL ILE GLY TYR TYR PHE ILE SEQRES 2 B 499 PRO THR ASN GLN ILE ASN ASN TYR THR GLU THR ASP THR SEQRES 3 B 499 SER VAL VAL PRO PHE PRO VAL SER ASN ILE THR PRO ALA SEQRES 4 B 499 LYS ALA LYS GLN LEU THR HIS ILE ASN PHE SER PHE LEU SEQRES 5 B 499 ASP ILE ASN SER ASN LEU GLU CYS ALA TRP ASP PRO ALA SEQRES 6 B 499 THR ASN ASP ALA LYS ALA ARG ASP VAL VAL ASN ARG LEU SEQRES 7 B 499 THR ALA LEU LYS ALA HIS ASN PRO SER LEU ARG ILE MET SEQRES 8 B 499 PHE SER ILE GLY GLY TRP TYR TYR SER ASN ASP LEU GLY SEQRES 9 B 499 VAL SER HIS ALA ASN TYR VAL ASN ALA VAL LYS THR PRO SEQRES 10 B 499 ALA SER ARG THR LYS PHE ALA GLN SER CYS VAL ARG ILE SEQRES 11 B 499 MET LYS ASP TYR GLY PHE ASP GLY VAL ASP ILE ASP TRP SEQRES 12 B 499 GLU TYR PRO GLN ALA ALA GLU VAL ASP GLY PHE ILE ALA SEQRES 13 B 499 ALA LEU GLN GLU ILE ARG THR LEU LEU ASN GLN GLN THR SEQRES 14 B 499 ILE THR ASP GLY ARG GLN ALA LEU PRO TYR GLN LEU THR SEQRES 15 B 499 ILE ALA GLY ALA GLY GLY ALA PHE PHE LEU SER ARG TYR SEQRES 16 B 499 TYR SER LYS LEU ALA GLN ILE VAL ALA PRO LEU ASP TYR SEQRES 17 B 499 ILE ASN LEU MET THR TYR ASP LEU ALA GLY PRO TRP GLU SEQRES 18 B 499 LYS VAL THR ASN HIS GLN ALA ALA LEU PHE GLY ASP ALA SEQRES 19 B 499 ALA GLY PRO THR PHE TYR ASN ALA LEU ARG GLU ALA ASN SEQRES 20 B 499 LEU GLY TRP SER TRP GLU GLU LEU THR ARG ALA PHE PRO SEQRES 21 B 499 SER PRO PHE SER LEU THR VAL ASP ALA ALA VAL GLN GLN SEQRES 22 B 499 HIS LEU MET MET GLU GLY VAL PRO SER ALA LYS ILE VAL SEQRES 23 B 499 MET GLY VAL PRO PHE TYR GLY ARG ALA PHE LYS GLY VAL SEQRES 24 B 499 SER GLY GLY ASN GLY GLY GLN TYR SER SER HIS SER THR SEQRES 25 B 499 PRO GLY GLU ASP PRO TYR PRO SER THR ASP TYR TRP LEU SEQRES 26 B 499 VAL GLY CYS GLU GLU CYS VAL ARG ASP LYS ASP PRO ARG SEQRES 27 B 499 ILE ALA SER TYR ARG GLN LEU GLU GLN MET LEU GLN GLY SEQRES 28 B 499 ASN TYR GLY TYR GLN ARG LEU TRP ASN ASP LYS THR LYS SEQRES 29 B 499 THR PRO TYR LEU TYR HIS ALA GLN ASN GLY LEU PHE VAL SEQRES 30 B 499 THR TYR ASP ASP ALA GLU SER PHE LYS TYR LYS ALA LYS SEQRES 31 B 499 TYR ILE LYS GLN GLN GLN LEU GLY GLY VAL MET PHE TRP SEQRES 32 B 499 HIS LEU GLY GLN ASP ASN ARG ASN GLY ASP LEU LEU ALA SEQRES 33 B 499 ALA LEU ASP ARG TYR PHE ASN ALA ALA ASP TYR ASP ASP SEQRES 34 B 499 SER GLN LEU ASP MET GLY THR GLY LEU ARG TYR THR GLY SEQRES 35 B 499 VAL GLY PRO GLY ASN LEU PRO ILE MET THR ALA PRO ALA SEQRES 36 B 499 TYR VAL PRO GLY THR THR TYR ALA GLN GLY ALA LEU VAL SEQRES 37 B 499 SER TYR GLN GLY TYR VAL TRP GLN THR LYS TRP GLY TYR SEQRES 38 B 499 ILE THR SER ALA PRO GLY SER ASP SER ALA TRP LEU LYS SEQRES 39 B 499 VAL GLY ARG VAL ALA SEQRES 1 C 5 0AR DPR HSE HIS UN1 SEQRES 1 D 5 0AR DPR HSE HIS UN1 HET 0AR C 1 14 HET DPR C 2 7 HET HSE C 3 7 HET UN1 C 5 10 HET 0AR D 1 14 HET DPR D 2 7 HET HSE D 3 7 HET UN1 D 5 10 HET GOL A1500 6 HET GOL B1501 6 HET GOL B1503 6 HET GOL B1504 6 HET GOL C1502 6 HETNAM 0AR N-[N-[(4S)-4-AZANYL-5-HYDROXY-5-OXO- HETNAM 2 0AR PENTYL]CARBAMIMIDOYL]ETHANAMIDE HETNAM DPR D-PROLINE HETNAM HSE L-HOMOSERINE HETNAM UN1 2-AMINOHEXANEDIOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 0AR 2(C8 H16 N4 O3) FORMUL 3 DPR 2(C5 H9 N O2) FORMUL 3 HSE 2(C4 H9 N O3) FORMUL 3 UN1 2(C6 H11 N O4) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *614(H2 O) HELIX 1 1 PRO A 14 ASN A 19 1 6 HELIX 2 2 PRO A 32 ILE A 36 5 5 HELIX 3 3 THR A 37 LEU A 44 1 8 HELIX 4 4 ASN A 67 LEU A 81 1 15 HELIX 5 5 LYS A 82 HIS A 84 5 3 HELIX 6 6 GLY A 96 ASN A 101 1 6 HELIX 7 7 SER A 106 VAL A 114 1 9 HELIX 8 8 THR A 116 GLY A 135 1 20 HELIX 9 9 GLN A 147 ASP A 172 1 26 HELIX 10 10 GLY A 188 SER A 193 1 6 HELIX 11 11 ARG A 194 SER A 197 5 4 HELIX 12 12 LYS A 198 ALA A 204 1 7 HELIX 13 13 ASN A 241 ALA A 246 5 6 HELIX 14 14 SER A 251 PHE A 259 1 9 HELIX 15 15 THR A 266 MET A 276 1 11 HELIX 16 16 PRO A 281 ALA A 283 5 3 HELIX 17 17 CYS A 328 ASP A 334 1 7 HELIX 18 18 TYR A 342 GLY A 351 1 10 HELIX 19 19 ASP A 381 GLN A 395 1 15 HELIX 20 20 HIS A 404 ASP A 408 5 5 HELIX 21 21 GLY A 412 ALA A 424 1 13 HELIX 22 22 GLY A 444 LEU A 448 5 5 HELIX 23 23 PRO B 14 ASN B 20 1 7 HELIX 24 24 PRO B 32 ILE B 36 5 5 HELIX 25 25 THR B 37 LEU B 44 1 8 HELIX 26 26 ASN B 67 LEU B 81 1 15 HELIX 27 27 LYS B 82 ASN B 85 5 4 HELIX 28 28 GLY B 96 ASN B 101 1 6 HELIX 29 29 SER B 106 VAL B 114 1 9 HELIX 30 30 THR B 116 GLY B 135 1 20 HELIX 31 31 ALA B 149 GLY B 173 1 25 HELIX 32 32 GLY B 188 SER B 193 1 6 HELIX 33 33 ARG B 194 SER B 197 5 4 HELIX 34 34 LYS B 198 ALA B 204 1 7 HELIX 35 35 ASN B 241 ALA B 246 5 6 HELIX 36 36 SER B 251 PHE B 259 1 9 HELIX 37 37 THR B 266 MET B 276 1 11 HELIX 38 38 PRO B 281 ALA B 283 5 3 HELIX 39 39 CYS B 328 LYS B 335 1 8 HELIX 40 40 TYR B 342 GLY B 351 1 10 HELIX 41 41 ASP B 381 GLN B 395 1 15 HELIX 42 42 HIS B 404 ASP B 408 5 5 HELIX 43 43 GLY B 412 ALA B 424 1 13 SHEET 1 AA11 ALA A 6 PHE A 12 0 SHEET 2 AA11 GLY A 399 TRP A 403 1 O VAL A 400 N ILE A 8 SHEET 3 AA11 ILE A 285 PRO A 290 1 O MET A 287 N MET A 401 SHEET 4 AA11 TYR A 208 MET A 212 1 O ILE A 209 N VAL A 286 SHEET 5 AA11 GLN A 180 ALA A 186 1 O ILE A 183 N ASN A 210 SHEET 6 AA11 GLY A 138 ASP A 142 1 O VAL A 139 N THR A 182 SHEET 7 AA11 ARG A 89 GLY A 95 1 O PHE A 92 N ASP A 140 SHEET 8 AA11 HIS A 46 ILE A 54 1 O ILE A 47 N MET A 91 SHEET 9 AA11 ALA A 6 PHE A 12 1 O GLY A 9 N ASN A 48 SHEET 10 AA11 GLY A 399 TRP A 403 1 O VAL A 400 N ILE A 8 SHEET 11 AA11 ALA A 6 PHE A 12 1 O ALA A 6 N VAL A 400 SHEET 1 AB 5 ILE A 339 SER A 341 0 SHEET 2 AB 5 TYR A 292 PHE A 296 -1 O GLY A 293 N ALA A 340 SHEET 3 AB 5 LEU A 375 THR A 378 -1 O PHE A 376 N PHE A 296 SHEET 4 AB 5 THR A 365 HIS A 370 -1 O LEU A 368 N VAL A 377 SHEET 5 AB 5 GLN A 356 ASN A 360 -1 O GLN A 356 N TYR A 369 SHEET 1 AC 3 LEU A 467 TYR A 470 0 SHEET 2 AC 3 TYR A 473 THR A 477 -1 O TYR A 473 N TYR A 470 SHEET 3 AC 3 TRP A 492 ARG A 497 -1 O LEU A 493 N GLN A 476 SHEET 1 BA10 ALA B 6 PHE B 12 0 SHEET 2 BA10 GLY B 399 TRP B 403 1 O VAL B 400 N ILE B 8 SHEET 3 BA10 ILE B 285 PRO B 290 1 O MET B 287 N MET B 401 SHEET 4 BA10 TYR B 208 MET B 212 1 O ILE B 209 N VAL B 286 SHEET 5 BA10 GLN B 180 ALA B 186 1 O ILE B 183 N ASN B 210 SHEET 6 BA10 GLY B 138 ASP B 142 1 O VAL B 139 N THR B 182 SHEET 7 BA10 ARG B 89 GLY B 95 1 O PHE B 92 N ASP B 140 SHEET 8 BA10 HIS B 46 ILE B 54 1 O ILE B 47 N MET B 91 SHEET 9 BA10 ALA B 6 PHE B 12 1 O GLY B 9 N ASN B 48 SHEET 10 BA10 ALA B 6 PHE B 12 1 N PHE B 12 O TYR B 10 SHEET 1 BB 5 ILE B 339 SER B 341 0 SHEET 2 BB 5 TYR B 292 LYS B 297 -1 O GLY B 293 N ALA B 340 SHEET 3 BB 5 LEU B 375 THR B 378 -1 O PHE B 376 N PHE B 296 SHEET 4 BB 5 THR B 365 HIS B 370 -1 O LEU B 368 N VAL B 377 SHEET 5 BB 5 TYR B 355 ASN B 360 -1 O GLN B 356 N TYR B 369 SHEET 1 BC 3 LEU B 467 TYR B 470 0 SHEET 2 BC 3 TYR B 473 THR B 477 -1 O TYR B 473 N TYR B 470 SHEET 3 BC 3 TRP B 492 ARG B 497 -1 O LEU B 493 N GLN B 476 SSBOND 1 CYS A 328 CYS A 331 1555 1555 2.04 SSBOND 2 CYS B 328 CYS B 331 1555 1555 2.05 LINK C 0AR C 1 N DPR C 2 1555 1555 1.34 LINK N 0AR C 1 C UN1 C 5 1555 1555 1.34 LINK C DPR C 2 N HSE C 3 1555 1555 1.34 LINK C HSE C 3 N HIS C 4 1555 1555 1.32 LINK C4 HSE C 3 N HIS C 4 1555 1555 1.49 LINK C HIS C 4 N UN1 C 5 1555 1555 1.31 LINK C 0AR D 1 N DPR D 2 1555 1555 1.34 LINK N 0AR D 1 C UN1 D 5 1555 1555 1.34 LINK C DPR D 2 N HSE D 3 1555 1555 1.33 LINK C HSE D 3 N HIS D 4 1555 1555 1.32 LINK C4 HSE D 3 N HIS D 4 1555 1555 1.48 LINK C HIS D 4 N UN1 D 5 1555 1555 1.31 CISPEP 1 SER A 50 PHE A 51 0 -3.57 CISPEP 2 GLU A 144 TYR A 145 0 0.73 CISPEP 3 SER A 261 PRO A 262 0 0.09 CISPEP 4 ASP A 316 PRO A 317 0 0.09 CISPEP 5 TRP A 403 HIS A 404 0 -7.39 CISPEP 6 SER B 50 PHE B 51 0 -4.50 CISPEP 7 GLU B 144 TYR B 145 0 -2.06 CISPEP 8 SER B 261 PRO B 262 0 -0.12 CISPEP 9 ASP B 316 PRO B 317 0 0.03 CISPEP 10 TRP B 403 HIS B 404 0 -7.48 SITE 1 AC1 7 TRP A 479 GLY A 480 HOH A2305 HOH A2306 SITE 2 AC1 7 GLU B 221 PHE B 239 GOL B1504 SITE 1 AC2 6 PHE B 12 PHE B 51 TRP B 97 TYR B 98 SITE 2 AC2 6 HOH B2059 GOL C1502 SITE 1 AC3 6 PRO B 260 PHE B 263 SER B 264 ARG B 439 SITE 2 AC3 6 THR B 441 HOH B2160 SITE 1 AC4 2 GOL B1501 HOH C2300 SITE 1 AC5 9 TRP A 479 TYR A 481 ILE A 482 ASP A 489 SITE 2 AC5 9 GOL A1500 PHE B 190 PHE B 191 ARG B 194 SITE 3 AC5 9 HOH B2301 SITE 1 AC6 18 TYR A 481 TYR B 10 TRP B 97 ASP B 142 SITE 2 AC6 18 GLU B 144 PHE B 191 MET B 212 TYR B 214 SITE 3 AC6 18 ASP B 215 TRP B 220 TYR B 292 ARG B 294 SITE 4 AC6 18 ASP B 316 ILE B 339 TRP B 403 GOL B1501 SITE 5 AC6 18 GOL C1502 HOH C2001 SITE 1 AC7 15 TYR A 10 TRP A 97 ASP A 142 GLU A 144 SITE 2 AC7 15 PHE A 191 TYR A 214 ASP A 215 TRP A 220 SITE 3 AC7 15 TYR A 292 ARG A 294 ASP A 316 TRP A 403 SITE 4 AC7 15 TYR B 481 HOH D2005 HOH D2006 CRYST1 55.063 102.934 185.784 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005383 0.00000